Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.28346 * 2 1 4 4 C 1.54382 * 110.32463 * 122.12164 * 2 1 3 5 5 N 1.48560 * 104.59275 * 95.04380 * 4 2 1 6 6 C 1.46899 * 111.00105 * 159.03799 * 5 4 2 7 7 C 1.50695 * 109.47172 * 169.99977 * 6 5 4 8 8 C 1.38639 * 119.74894 * 90.00589 * 7 6 5 9 9 C 1.37613 * 120.24982 * 180.25684 * 8 7 6 10 10 C 1.40710 * 119.74505 * 359.49193 * 9 8 7 11 11 C 1.41399 * 120.24280 * 180.27628 * 10 9 8 12 12 H 1.08001 * 119.99642 * 204.50786 * 11 10 9 13 13 C 1.39941 * 120.00358 * 24.50617 * 11 10 9 14 14 N 1.30829 * 119.99587 * 17.74389 * 13 11 10 15 15 Si 1.86798 * 120.00135 * 197.73742 * 13 11 10 16 16 H 1.48502 * 109.47080 * 90.00367 * 15 13 11 17 17 H 1.48499 * 109.47301 * 210.00161 * 15 13 11 18 18 H 1.48495 * 109.47276 * 330.00274 * 15 13 11 19 19 C 1.40714 * 119.51224 * 0.47941 * 10 9 8 20 20 C 1.37620 * 119.74300 * 359.77412 * 19 10 9 21 21 C 1.48566 * 104.22005 * 39.48747 * 5 4 2 22 22 C 1.54256 * 110.32724 * 237.76349 * 2 1 3 23 23 H 1.09004 * 110.32466 * 359.97438 * 22 2 1 24 24 O 1.42900 * 110.32649 * 122.10625 * 22 2 1 25 25 H 1.08993 * 109.47391 * 299.32837 * 1 2 3 26 26 H 1.09002 * 109.46763 * 59.33186 * 1 2 3 27 27 H 1.09005 * 109.46648 * 179.32627 * 1 2 3 28 28 H 1.08999 * 109.46855 * 180.67291 * 3 2 1 29 29 H 1.09000 * 109.47271 * 300.66610 * 3 2 1 30 30 H 1.08998 * 109.47542 * 60.67586 * 3 2 1 31 31 H 1.09004 * 110.41124 * 336.27437 * 4 2 1 32 32 H 1.08995 * 110.41006 * 213.82616 * 4 2 1 33 33 H 1.09002 * 109.46939 * 50.00394 * 6 5 4 34 34 H 1.08995 * 109.47320 * 290.00805 * 6 5 4 35 35 H 1.08001 * 119.87024 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.12345 * 179.74466 * 9 8 7 37 37 H 0.96998 * 119.99683 * 180.02562 * 14 13 11 38 38 H 1.08005 * 120.13043 * 179.74997 * 19 10 9 39 39 H 1.07997 * 119.87291 * 179.97438 * 20 19 10 40 40 H 1.08990 * 110.41360 * 79.29123 * 21 5 4 41 41 H 1.09003 * 110.41215 * 201.73983 * 21 5 4 42 42 H 0.96700 * 114.00187 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0604 1.4351 0.0000 4 6 2.0663 -0.7698 1.2261 5 7 2.3148 -2.1459 0.7247 6 6 3.2650 -2.8578 1.5897 7 6 3.3059 -4.3130 1.2003 8 6 4.2104 -4.7436 0.2419 9 6 4.2530 -6.0691 -0.1253 10 6 3.3812 -6.9906 0.4837 11 6 3.4199 -8.3561 0.1186 12 1 2.5471 -8.9769 0.2570 13 6 4.5891 -8.9030 -0.4219 14 7 5.7306 -8.2805 -0.2761 15 14 4.5201 -10.5218 -1.3515 16 1 4.2751 -10.2554 -2.7918 17 1 5.8108 -11.2389 -1.1933 18 1 3.4195 -11.3578 -0.8086 19 6 2.4676 -6.5424 1.4556 20 6 2.4391 -5.2112 1.8035 21 6 2.8808 -1.9427 -0.6338 22 6 2.0659 -0.7716 -1.2235 23 1 1.2389 -1.1508 -1.8239 24 8 2.9062 0.0722 -2.0135 25 1 -0.3634 0.5033 0.8959 26 1 -0.3633 0.5242 -0.8840 27 1 -0.3633 -1.0277 -0.0121 28 1 3.1502 1.4197 -0.0121 29 1 1.6948 1.9577 -0.8839 30 1 1.7143 1.9505 0.8959 31 1 1.3213 -0.7839 2.0217 32 1 2.9941 -0.3210 1.5807 33 1 2.9478 -2.7685 2.6287 34 1 4.2577 -2.4227 1.4743 35 1 4.8811 -4.0351 -0.2215 36 1 4.9556 -6.4016 -0.8751 37 1 6.5410 -8.6594 -0.6510 38 1 1.7912 -7.2404 1.9265 39 1 1.7385 -4.8649 2.5488 40 1 3.9360 -1.6775 -0.5702 41 1 2.7491 -2.8399 -1.2386 42 1 3.2726 -0.3601 -2.7970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336251629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -37.795867 kcal Electronic energy + Delta-G solvation = -21297.443187 eV Core-core repulsion = 18241.330467 eV Total energy + Delta-G solvation = -3056.112720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75808 -37.59122 -35.77080 -34.32577 -33.29145 -30.37749 -29.32224 -28.47058 -27.25256 -26.81328 -24.72429 -23.19981 -21.40670 -20.78172 -19.80530 -18.88099 -17.28082 -17.27549 -15.69203 -15.32357 -14.91987 -14.53742 -14.32587 -13.99280 -13.83244 -13.49340 -13.33203 -12.88962 -12.54452 -12.33886 -12.16516 -12.04262 -11.92806 -11.59420 -11.56854 -11.24516 -11.18119 -11.00121 -10.86433 -10.70529 -10.49185 -10.31528 -10.26120 -9.85150 -9.54946 -9.36092 -9.12272 -8.14914 -7.42579 -7.27752 -6.75610 -4.33848 2.74486 3.06545 3.10356 3.10577 3.18436 3.93267 4.04714 4.46367 4.53431 4.68928 4.83030 4.97195 5.27318 5.34889 5.45697 5.62322 5.65945 5.70932 5.75749 5.76728 5.85895 5.92229 5.99955 6.05317 6.11976 6.19983 6.25831 6.28023 6.38153 6.40265 6.43462 6.94553 7.07443 7.11269 7.31344 7.37428 7.40550 7.63382 7.64696 7.90055 8.07084 8.15784 8.31994 8.65515 8.91105 8.99470 10.19049 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.003786 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.115440 B = 7394.216227 C = 7711.389530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.122 4.122 4 C 0.037 3.963 5 N -0.496 5.496 6 C 0.110 3.890 7 C -0.205 4.205 8 C -0.093 4.093 9 C -0.166 4.166 10 C 0.112 3.888 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.794 5.794 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.228 4.228 20 C -0.070 4.070 21 C 0.008 3.992 22 C 0.104 3.896 23 H 0.066 0.934 24 O -0.563 6.563 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 13.128 -1.628 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 C -0.180 4.180 4 C -0.091 4.091 5 N -0.221 5.221 6 C -0.017 4.017 7 C -0.207 4.207 8 C -0.112 4.112 9 C -0.185 4.185 10 C 0.110 3.890 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.420 5.420 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.248 4.248 20 C -0.089 4.089 21 C -0.120 4.120 22 C 0.045 3.955 23 H 0.084 0.916 24 O -0.368 6.368 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.016 13.209 -1.196 14.179 hybrid contribution 1.082 -0.839 -0.766 1.569 sum -3.934 12.369 -1.961 13.127 Atomic orbital electron populations 1.21824 0.93410 1.02487 1.01397 1.21302 0.95959 0.95540 0.93469 1.21539 1.01232 0.94337 1.00854 1.23268 0.99661 0.89522 0.96689 1.65518 1.41906 1.12864 1.01782 1.20903 0.92314 0.92886 0.95621 1.18800 1.03592 0.92403 1.05885 1.20490 0.97639 0.95604 0.97491 1.21267 1.03145 0.91424 1.02689 1.17615 0.89903 0.93130 0.88389 1.19609 0.98186 0.95085 1.36477 0.90497 1.25902 0.94753 0.99250 0.94206 1.69835 0.99143 1.38589 1.34424 0.86331 0.78559 0.81445 0.80494 1.19306 1.20358 1.18623 1.20966 1.05868 0.94779 1.03145 1.20315 0.96870 0.93314 0.98402 1.23786 0.97071 0.98569 0.92592 1.22661 0.91882 0.89246 0.91755 0.91626 1.86514 1.67753 1.41442 1.41102 0.92470 0.92865 0.91613 0.92409 0.92402 0.93337 0.90228 0.94063 0.91662 0.95463 0.90114 0.86619 0.90954 0.89140 0.89550 0.93376 0.89531 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.23 37.16 0.31 -1.15 16 2 C -0.06 -0.76 1.03 -153.12 -0.16 -0.91 16 3 C -0.12 -1.37 7.48 37.16 0.28 -1.09 16 4 C 0.04 0.50 5.55 -2.18 -0.01 0.48 16 5 N -0.50 -8.07 5.33 -231.41 -1.23 -9.30 16 6 C 0.11 1.96 4.97 -4.98 -0.02 1.94 16 7 C -0.21 -4.45 5.22 -104.33 -0.54 -4.99 16 8 C -0.09 -2.16 8.88 -39.66 -0.35 -2.51 16 9 C -0.17 -4.30 8.70 -38.88 -0.34 -4.64 16 10 C 0.11 3.00 5.57 -106.83 -0.60 2.41 16 11 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 12 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 13 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 14 N -0.79 -20.59 10.95 55.55 0.61 -19.98 16 15 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 20 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 21 C 0.01 0.13 5.44 -2.18 -0.01 0.12 16 22 C 0.10 1.33 4.04 -25.35 -0.10 1.23 16 23 H 0.07 0.82 7.71 -51.93 -0.40 0.42 16 24 O -0.56 -6.66 11.56 -35.23 -0.41 -7.07 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.71 7.78 -51.93 -0.40 0.30 16 29 H 0.06 0.64 8.00 -51.93 -0.42 0.23 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 32 H 0.04 0.56 7.72 -51.93 -0.40 0.16 16 33 H 0.06 1.11 8.02 -51.93 -0.42 0.69 16 34 H 0.03 0.48 7.71 -51.93 -0.40 0.08 16 35 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.05 0.75 7.69 -51.93 -0.40 0.36 16 41 H 0.09 1.45 7.88 -51.93 -0.41 1.04 16 42 H 0.38 3.11 9.12 45.56 0.42 3.52 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -28.03 336.13 -9.82 -37.85 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.07 Total: 7.79 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.75 Total: -28.02 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: -0.62 Total: -29.28 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.41 Total: -7.07 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.03 -9.82 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336251629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.051 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds