Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.28346 * 2 1 4 4 C 1.54382 * 110.32463 * 122.12164 * 2 1 3 5 5 N 1.48560 * 104.59275 * 95.04380 * 4 2 1 6 6 C 1.46899 * 111.00105 * 159.03799 * 5 4 2 7 7 C 1.50695 * 109.47172 * 169.99977 * 6 5 4 8 8 C 1.38639 * 119.74894 * 90.00589 * 7 6 5 9 9 C 1.37613 * 120.24982 * 180.25684 * 8 7 6 10 10 C 1.40710 * 119.74505 * 359.49193 * 9 8 7 11 11 C 1.41399 * 120.24280 * 180.27628 * 10 9 8 12 12 H 1.08001 * 119.99642 * 204.50786 * 11 10 9 13 13 C 1.39941 * 120.00358 * 24.50617 * 11 10 9 14 14 N 1.30829 * 119.99587 * 17.74389 * 13 11 10 15 15 Si 1.86798 * 120.00135 * 197.73742 * 13 11 10 16 16 H 1.48502 * 109.47080 * 90.00367 * 15 13 11 17 17 H 1.48499 * 109.47301 * 210.00161 * 15 13 11 18 18 H 1.48495 * 109.47276 * 330.00274 * 15 13 11 19 19 C 1.40714 * 119.51224 * 0.47941 * 10 9 8 20 20 C 1.37620 * 119.74300 * 359.77412 * 19 10 9 21 21 C 1.48566 * 104.22005 * 39.48747 * 5 4 2 22 22 C 1.54256 * 110.32724 * 237.76349 * 2 1 3 23 23 H 1.09004 * 110.32466 * 359.97438 * 22 2 1 24 24 O 1.42900 * 110.32649 * 122.10625 * 22 2 1 25 25 H 1.08993 * 109.47391 * 299.32837 * 1 2 3 26 26 H 1.09002 * 109.46763 * 59.33186 * 1 2 3 27 27 H 1.09005 * 109.46648 * 179.32627 * 1 2 3 28 28 H 1.08999 * 109.46855 * 180.67291 * 3 2 1 29 29 H 1.09000 * 109.47271 * 300.66610 * 3 2 1 30 30 H 1.08998 * 109.47542 * 60.67586 * 3 2 1 31 31 H 1.09004 * 110.41124 * 336.27437 * 4 2 1 32 32 H 1.08995 * 110.41006 * 213.82616 * 4 2 1 33 33 H 1.09002 * 109.46939 * 50.00394 * 6 5 4 34 34 H 1.08995 * 109.47320 * 290.00805 * 6 5 4 35 35 H 1.08001 * 119.87024 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.12345 * 179.74466 * 9 8 7 37 37 H 0.96998 * 119.99683 * 180.02562 * 14 13 11 38 38 H 1.08005 * 120.13043 * 179.74997 * 19 10 9 39 39 H 1.07997 * 119.87291 * 179.97438 * 20 19 10 40 40 H 1.08990 * 110.41360 * 79.29123 * 21 5 4 41 41 H 1.09003 * 110.41215 * 201.73983 * 21 5 4 42 42 H 0.96700 * 114.00187 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0604 1.4351 0.0000 4 6 2.0663 -0.7698 1.2261 5 7 2.3148 -2.1459 0.7247 6 6 3.2650 -2.8578 1.5897 7 6 3.3059 -4.3130 1.2003 8 6 4.2104 -4.7436 0.2419 9 6 4.2530 -6.0691 -0.1253 10 6 3.3812 -6.9906 0.4837 11 6 3.4199 -8.3561 0.1186 12 1 2.5471 -8.9769 0.2570 13 6 4.5891 -8.9030 -0.4219 14 7 5.7306 -8.2805 -0.2761 15 14 4.5201 -10.5218 -1.3515 16 1 4.2751 -10.2554 -2.7918 17 1 5.8108 -11.2389 -1.1933 18 1 3.4195 -11.3578 -0.8086 19 6 2.4676 -6.5424 1.4556 20 6 2.4391 -5.2112 1.8035 21 6 2.8808 -1.9427 -0.6338 22 6 2.0659 -0.7716 -1.2235 23 1 1.2389 -1.1508 -1.8239 24 8 2.9062 0.0722 -2.0135 25 1 -0.3634 0.5033 0.8959 26 1 -0.3633 0.5242 -0.8840 27 1 -0.3633 -1.0277 -0.0121 28 1 3.1502 1.4197 -0.0121 29 1 1.6948 1.9577 -0.8839 30 1 1.7143 1.9505 0.8959 31 1 1.3213 -0.7839 2.0217 32 1 2.9941 -0.3210 1.5807 33 1 2.9478 -2.7685 2.6287 34 1 4.2577 -2.4227 1.4743 35 1 4.8811 -4.0351 -0.2215 36 1 4.9556 -6.4016 -0.8751 37 1 6.5410 -8.6594 -0.6510 38 1 1.7912 -7.2404 1.9265 39 1 1.7385 -4.8649 2.5488 40 1 3.9360 -1.6775 -0.5702 41 1 2.7491 -2.8399 -1.2386 42 1 3.2726 -0.3601 -2.7970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336251629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -55.287979 kcal Electronic energy + Delta-G solvation = -21298.201702 eV Core-core repulsion = 18241.330467 eV Total energy + Delta-G solvation = -3056.871235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88632 -39.36165 -36.93297 -35.79174 -34.76833 -32.06635 -31.18960 -29.78860 -28.33381 -28.09332 -26.14679 -24.59182 -23.02058 -22.40038 -21.48054 -19.91089 -19.21115 -18.26564 -17.17475 -16.83955 -16.35360 -15.85827 -15.70406 -15.36165 -15.22154 -14.91080 -14.63919 -14.24660 -14.07316 -13.80585 -13.46806 -13.41124 -13.11067 -12.95391 -12.87371 -12.78432 -12.58778 -12.44065 -12.31390 -12.08916 -11.84757 -11.68751 -11.35769 -11.27644 -11.21703 -11.01324 -10.84668 -9.47956 -9.30689 -9.16604 -8.63625 -6.32790 0.94665 1.16818 1.37326 1.50503 1.51009 2.20572 2.66770 3.03889 3.45460 3.52849 3.70438 3.84947 3.97091 4.24184 4.25978 4.31177 4.37263 4.47644 4.53816 4.62437 4.69849 4.76165 4.82938 4.83564 4.89195 4.95436 5.04359 5.06023 5.13835 5.16750 5.24547 5.36432 5.37211 5.48484 5.51099 5.71551 5.88872 5.96286 6.10645 6.13914 6.28577 6.40702 6.71310 6.83870 6.95334 7.05183 8.33529 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.003786 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.115440 B = 7394.216227 C = 7711.389530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.115 4.115 4 C 0.038 3.962 5 N -0.508 5.508 6 C 0.115 3.885 7 C -0.193 4.193 8 C -0.094 4.094 9 C -0.189 4.189 10 C 0.080 3.920 11 C -0.504 4.504 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.827 5.827 15 Si 0.982 3.018 16 H -0.262 1.262 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.244 4.244 20 C -0.073 4.073 21 C 0.010 3.990 22 C 0.110 3.890 23 H 0.069 0.931 24 O -0.568 6.568 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.287 0.713 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 14.632 -1.498 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.173 4.173 4 C -0.089 4.089 5 N -0.233 5.233 6 C -0.012 4.012 7 C -0.194 4.194 8 C -0.113 4.113 9 C -0.209 4.209 10 C 0.077 3.923 11 C -0.533 4.533 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.453 5.453 15 Si 0.802 3.198 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.264 4.264 20 C -0.092 4.092 21 C -0.119 4.119 22 C 0.051 3.949 23 H 0.086 0.914 24 O -0.375 6.375 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.781 14.731 -1.069 15.861 hybrid contribution 1.311 -1.151 -0.765 1.905 sum -4.470 13.580 -1.834 14.414 Atomic orbital electron populations 1.21792 0.92244 1.02027 1.02648 1.21352 0.96864 0.95788 0.92276 1.21476 1.00356 0.93697 1.01752 1.23345 1.00192 0.87826 0.97580 1.65396 1.41156 1.14798 1.01925 1.20813 0.93234 0.90433 0.96726 1.19224 1.01660 0.94642 1.03889 1.20684 0.98111 0.94812 0.97702 1.21225 1.03636 0.92692 1.03309 1.17951 0.91059 0.93748 0.89499 1.19842 0.98986 0.95536 1.38960 0.90883 1.26740 0.93835 1.02928 0.94355 1.69886 0.99854 1.40452 1.35134 0.85215 0.78903 0.76750 0.78902 1.18697 1.19189 1.18251 1.21173 1.05902 0.96123 1.03169 1.20630 0.97304 0.92542 0.98703 1.23746 0.97219 0.98756 0.92185 1.22568 0.91552 0.88575 0.92251 0.91357 1.86489 1.67680 1.41462 1.41821 0.90974 0.91953 0.92876 0.93624 0.92247 0.91724 0.89045 0.93814 0.90094 0.95119 0.88568 0.88416 0.90225 0.88738 0.86819 0.93949 0.91743 0.76026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.23 71.98 0.59 -1.85 16 2 C -0.06 -1.35 1.03 -51.28 -0.05 -1.40 16 3 C -0.12 -2.26 7.48 71.98 0.54 -1.72 16 4 C 0.04 0.92 5.55 86.45 0.48 1.40 16 5 N -0.51 -15.56 5.33 -886.04 -4.72 -20.28 16 6 C 0.12 3.90 4.97 85.56 0.43 4.33 16 7 C -0.19 -8.20 5.22 -19.68 -0.10 -8.30 16 8 C -0.09 -4.40 8.88 22.22 0.20 -4.20 16 9 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 10 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 11 C -0.50 -27.92 9.05 23.46 0.21 -27.71 16 12 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 13 C 0.04 1.85 5.14 85.25 0.44 2.29 16 14 N -0.83 -44.12 10.95 21.83 0.24 -43.88 16 15 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 C -0.24 -12.33 9.80 22.73 0.22 -12.11 16 20 C -0.07 -3.26 9.67 22.22 0.21 -3.05 16 21 C 0.01 0.29 5.44 86.45 0.47 0.76 16 22 C 0.11 2.63 4.04 31.49 0.13 2.76 16 23 H 0.07 1.60 7.71 -2.39 -0.02 1.59 16 24 O -0.57 -12.34 11.56 -148.98 -1.72 -14.06 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.04 1.00 7.78 -2.39 -0.02 0.99 16 29 H 0.06 1.15 8.00 -2.39 -0.02 1.13 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 2.02 7.86 -2.38 -0.02 2.00 16 32 H 0.04 1.05 7.72 -2.39 -0.02 1.03 16 33 H 0.08 2.50 8.02 -2.39 -0.02 2.48 16 34 H 0.03 1.02 7.71 -2.39 -0.02 1.01 16 35 H 0.10 4.10 8.06 -2.91 -0.02 4.07 16 36 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 37 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 38 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.04 1.29 7.69 -2.39 -0.02 1.27 16 41 H 0.06 2.16 7.88 -2.39 -0.02 2.15 16 42 H 0.39 5.83 9.12 -74.06 -0.68 5.16 16 Total: -1.00 -61.20 336.13 -0.01 -61.21 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.32 Total: 30.56 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 3.84 Total: -54.47 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -4.48 Total: -64.16 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.72 Total: -14.06 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -61.20 -0.01 -61.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336251629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.921 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds