Wall clock time and date at job start Mon Mar 30 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.27336 * 2 1 4 4 C 1.53987 * 110.30969 * 122.08770 * 2 1 3 5 5 N 1.47896 * 107.05967 * 120.14270 * 4 2 1 6 6 C 1.46900 * 111.00169 * 214.15731 * 5 4 2 7 7 C 1.50700 * 109.46961 * 170.00028 * 6 5 4 8 8 C 1.38632 * 119.75415 * 90.00181 * 7 6 5 9 9 C 1.37614 * 120.25406 * 180.02562 * 8 7 6 10 10 C 1.40719 * 119.74335 * 359.97438 * 9 8 7 11 11 C 1.41398 * 120.24359 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00234 * 336.15835 * 11 10 9 13 13 C 1.39946 * 119.99858 * 156.15593 * 11 10 9 14 14 N 1.30832 * 120.00122 * 341.49816 * 13 11 10 15 15 Si 1.86797 * 120.00107 * 161.49570 * 13 11 10 16 16 H 1.48497 * 109.47010 * 59.99790 * 15 13 11 17 17 H 1.48497 * 109.47062 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47071 * 300.00108 * 15 13 11 19 19 C 1.40717 * 119.51017 * 0.25490 * 10 9 8 20 20 C 1.37614 * 119.74603 * 359.51448 * 19 10 9 21 21 C 1.48536 * 105.82080 * 334.67242 * 5 4 2 22 22 C 1.54595 * 110.31252 * 237.80645 * 2 1 3 23 23 H 1.08993 * 110.72254 * 144.67810 * 22 2 1 24 24 O 1.42906 * 110.72173 * 21.57687 * 22 2 1 25 25 H 1.09002 * 109.47150 * 299.36437 * 1 2 3 26 26 H 1.09002 * 109.46709 * 59.36122 * 1 2 3 27 27 H 1.08996 * 109.46768 * 179.36108 * 1 2 3 28 28 H 1.08993 * 109.47538 * 180.63179 * 3 2 1 29 29 H 1.08998 * 109.47309 * 300.63845 * 3 2 1 30 30 H 1.09008 * 109.46793 * 60.63199 * 3 2 1 31 31 H 1.09008 * 109.91720 * 0.79096 * 4 2 1 32 32 H 1.09004 * 110.08609 * 239.58971 * 4 2 1 33 33 H 1.09002 * 109.47114 * 50.00460 * 6 5 4 34 34 H 1.09000 * 109.47170 * 289.99673 * 6 5 4 35 35 H 1.08000 * 119.87130 * 0.02562 * 8 7 6 36 36 H 1.07995 * 120.13155 * 179.97438 * 9 8 7 37 37 H 0.96994 * 119.99932 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.12755 * 179.72217 * 19 10 9 39 39 H 1.07994 * 119.87898 * 180.22851 * 20 19 10 40 40 H 1.08998 * 110.67116 * 157.63995 * 21 5 4 41 41 H 1.08997 * 110.66592 * 280.77219 * 21 5 4 42 42 H 0.96699 * 113.99590 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4353 0.0000 4 6 2.0645 -0.7671 1.2235 5 7 2.8810 -1.8883 0.7100 6 6 2.7669 -3.0652 1.5817 7 6 3.4046 -4.2529 0.9081 8 6 4.7499 -4.5189 1.1115 9 6 5.3428 -5.6004 0.5011 10 6 4.5780 -6.4380 -0.3317 11 6 5.1766 -7.5518 -0.9646 12 1 6.2420 -7.5645 -1.1411 13 6 4.3885 -8.6377 -1.3622 14 7 3.1968 -8.8040 -0.8485 15 14 5.0379 -9.8498 -2.6265 16 1 6.2829 -10.4779 -2.1161 17 1 4.0183 -10.9005 -2.8742 18 1 5.3286 -9.1340 -3.8948 19 6 3.2145 -6.1556 -0.5348 20 6 2.6415 -5.0713 0.0896 21 6 2.3585 -2.1802 -0.6495 22 6 2.0667 -0.7724 -1.2269 23 1 2.9806 -0.3125 -1.6027 24 8 1.0766 -0.8390 -2.2552 25 1 -0.3633 0.5039 0.8956 26 1 -0.3633 0.5237 -0.8842 27 1 -0.3633 -1.0276 -0.0115 28 1 3.1500 1.4201 -0.0113 29 1 1.6948 1.9576 -0.8842 30 1 1.7133 1.9507 0.8957 31 1 1.2323 -1.1531 1.8124 32 1 2.6804 -0.1101 1.8376 33 1 1.7144 -3.2766 1.7709 34 1 3.2735 -2.8680 2.5265 35 1 5.3348 -3.8749 1.7515 36 1 6.3910 -5.8055 0.6606 37 1 2.6504 -9.5564 -1.1244 38 1 2.6193 -6.7892 -1.1756 39 1 1.5943 -4.8547 -0.0618 40 1 3.1106 -2.6934 -1.2487 41 1 1.4434 -2.7695 -0.5916 42 1 1.3634 -1.3140 -3.0471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336251630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:52 Heat of formation + Delta-G solvation = -37.341707 kcal Electronic energy + Delta-G solvation = -21450.760869 eV Core-core repulsion = 18394.667842 eV Total energy + Delta-G solvation = -3056.093026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.77346 -37.61492 -35.75699 -34.33423 -33.25112 -30.31906 -29.36143 -28.46518 -27.33165 -26.81451 -24.66877 -23.23818 -21.42431 -20.72265 -19.76635 -18.89118 -17.30752 -17.20934 -15.69994 -15.33734 -14.89156 -14.48140 -14.27127 -14.03426 -13.71140 -13.54550 -13.38054 -12.82919 -12.56849 -12.34205 -12.14350 -12.08770 -11.95743 -11.69295 -11.51556 -11.30321 -11.17149 -11.03467 -10.88718 -10.68774 -10.48295 -10.33925 -10.22467 -9.75208 -9.56055 -9.37517 -9.12577 -8.08092 -7.44957 -7.30469 -6.78568 -4.36201 2.73349 3.04642 3.06848 3.08271 3.17863 3.91176 4.04630 4.50250 4.56207 4.70826 4.82008 4.98680 5.26239 5.40599 5.49305 5.59904 5.66486 5.70260 5.75279 5.80598 5.85182 5.95100 6.00083 6.04099 6.15838 6.23303 6.27226 6.33801 6.37503 6.43525 6.44931 6.93151 7.06011 7.16412 7.30239 7.36462 7.41840 7.60747 7.70909 7.87811 8.04211 8.13026 8.29332 8.62567 8.88311 8.96752 10.15952 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.004036 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.905457 B = 6936.288953 C = 7351.998857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 C -0.134 4.134 4 C 0.040 3.960 5 N -0.507 5.507 6 C 0.112 3.888 7 C -0.215 4.215 8 C -0.069 4.069 9 C -0.230 4.230 10 C 0.114 3.886 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.907 3.093 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.167 4.167 20 C -0.092 4.092 21 C 0.018 3.982 22 C 0.103 3.897 23 H 0.068 0.932 24 O -0.562 6.562 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.281 0.719 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 12.802 -0.275 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.069 4.069 3 C -0.192 4.192 4 C -0.088 4.088 5 N -0.232 5.232 6 C -0.015 4.015 7 C -0.217 4.217 8 C -0.087 4.087 9 C -0.249 4.249 10 C 0.111 3.889 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.417 5.417 15 Si 0.731 3.269 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.187 4.187 20 C -0.111 4.111 21 C -0.110 4.110 22 C 0.043 3.957 23 H 0.086 0.914 24 O -0.367 6.367 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.956 13.109 0.176 13.694 hybrid contribution -0.267 -1.338 -0.797 1.580 sum -4.223 11.771 -0.621 12.521 Atomic orbital electron populations 1.21610 0.93512 1.01919 1.01128 1.21396 0.96442 0.95368 0.93690 1.21848 1.01060 0.94655 1.01627 1.23067 0.95846 0.93996 0.95914 1.64897 1.49643 1.06353 1.02271 1.20918 0.97406 0.88251 0.94909 1.18846 0.94708 0.99426 1.08704 1.20333 0.93614 0.96226 0.98568 1.20962 0.98961 1.00381 1.04637 1.17613 0.91826 0.91080 0.88383 1.19581 0.95553 1.00367 1.33823 0.90496 1.25911 0.94408 0.98501 0.95260 1.69828 1.09789 1.27483 1.34618 0.86390 0.79513 0.79462 0.81507 1.18989 1.20343 1.18809 1.21259 0.96358 0.97599 1.03443 1.20516 0.96778 0.95833 0.97965 1.23768 0.99577 0.96059 0.91615 1.22821 0.90083 0.95172 0.87594 0.91408 1.86461 1.42202 1.79426 1.28578 0.93300 0.91930 0.92791 0.92197 0.92575 0.92542 0.93777 0.90491 0.95635 0.91488 0.89432 0.89120 0.90826 0.86634 0.90071 0.89492 0.93054 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 7.55 37.16 0.28 -1.21 16 2 C -0.07 -0.85 0.95 -153.15 -0.15 -0.99 16 3 C -0.13 -1.40 8.23 37.16 0.31 -1.10 16 4 C 0.04 0.54 6.02 -2.76 -0.02 0.52 16 5 N -0.51 -8.30 5.39 -231.90 -1.25 -9.55 16 6 C 0.11 2.01 5.18 -4.98 -0.03 1.99 16 7 C -0.22 -4.63 4.62 -104.33 -0.48 -5.11 16 8 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 9 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 10 C 0.11 3.01 5.58 -106.82 -0.60 2.42 16 11 C -0.46 -12.28 9.05 -37.74 -0.34 -12.62 16 12 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 13 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 14 N -0.79 -20.40 10.98 55.55 0.61 -19.79 16 15 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 16 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 19 C -0.17 -4.30 8.70 -38.87 -0.34 -4.63 16 20 C -0.09 -2.11 8.30 -39.66 -0.33 -2.44 16 21 C 0.02 0.29 4.69 -1.90 -0.01 0.28 16 22 C 0.10 1.38 3.84 -24.87 -0.10 1.28 16 23 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 24 O -0.56 -7.08 11.90 -35.23 -0.42 -7.50 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.04 0.60 7.11 -51.92 -0.37 0.23 16 32 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 33 H 0.03 0.45 7.75 -51.93 -0.40 0.05 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 38 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 39 H 0.08 1.73 7.37 -52.49 -0.39 1.35 16 40 H 0.09 1.56 7.73 -51.93 -0.40 1.16 16 41 H 0.05 0.89 7.07 -51.93 -0.37 0.52 16 42 H 0.38 3.49 9.12 45.56 0.42 3.91 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -27.61 333.11 -9.68 -37.29 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.97 Total: 8.75 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -2.65 Total: -27.74 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: -0.64 Total: -29.33 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.42 Total: -7.50 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.61 -9.68 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336251630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.050 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds