Wall clock time and date at job start Mon Mar 30 2020 01:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.27336 * 2 1 4 4 C 1.53987 * 110.30969 * 122.08770 * 2 1 3 5 5 N 1.47896 * 107.05967 * 120.14270 * 4 2 1 6 6 C 1.46900 * 111.00169 * 214.15731 * 5 4 2 7 7 C 1.50700 * 109.46961 * 170.00028 * 6 5 4 8 8 C 1.38632 * 119.75415 * 90.00181 * 7 6 5 9 9 C 1.37614 * 120.25406 * 180.02562 * 8 7 6 10 10 C 1.40719 * 119.74335 * 359.97438 * 9 8 7 11 11 C 1.41398 * 120.24359 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00234 * 336.15835 * 11 10 9 13 13 C 1.39946 * 119.99858 * 156.15593 * 11 10 9 14 14 N 1.30832 * 120.00122 * 341.49816 * 13 11 10 15 15 Si 1.86797 * 120.00107 * 161.49570 * 13 11 10 16 16 H 1.48497 * 109.47010 * 59.99790 * 15 13 11 17 17 H 1.48497 * 109.47062 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47071 * 300.00108 * 15 13 11 19 19 C 1.40717 * 119.51017 * 0.25490 * 10 9 8 20 20 C 1.37614 * 119.74603 * 359.51448 * 19 10 9 21 21 C 1.48536 * 105.82080 * 334.67242 * 5 4 2 22 22 C 1.54595 * 110.31252 * 237.80645 * 2 1 3 23 23 H 1.08993 * 110.72254 * 144.67810 * 22 2 1 24 24 O 1.42906 * 110.72173 * 21.57687 * 22 2 1 25 25 H 1.09002 * 109.47150 * 299.36437 * 1 2 3 26 26 H 1.09002 * 109.46709 * 59.36122 * 1 2 3 27 27 H 1.08996 * 109.46768 * 179.36108 * 1 2 3 28 28 H 1.08993 * 109.47538 * 180.63179 * 3 2 1 29 29 H 1.08998 * 109.47309 * 300.63845 * 3 2 1 30 30 H 1.09008 * 109.46793 * 60.63199 * 3 2 1 31 31 H 1.09008 * 109.91720 * 0.79096 * 4 2 1 32 32 H 1.09004 * 110.08609 * 239.58971 * 4 2 1 33 33 H 1.09002 * 109.47114 * 50.00460 * 6 5 4 34 34 H 1.09000 * 109.47170 * 289.99673 * 6 5 4 35 35 H 1.08000 * 119.87130 * 0.02562 * 8 7 6 36 36 H 1.07995 * 120.13155 * 179.97438 * 9 8 7 37 37 H 0.96994 * 119.99932 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.12755 * 179.72217 * 19 10 9 39 39 H 1.07994 * 119.87898 * 180.22851 * 20 19 10 40 40 H 1.08998 * 110.67116 * 157.63995 * 21 5 4 41 41 H 1.08997 * 110.66592 * 280.77219 * 21 5 4 42 42 H 0.96699 * 113.99590 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4353 0.0000 4 6 2.0645 -0.7671 1.2235 5 7 2.8810 -1.8883 0.7100 6 6 2.7669 -3.0652 1.5817 7 6 3.4046 -4.2529 0.9081 8 6 4.7499 -4.5189 1.1115 9 6 5.3428 -5.6004 0.5011 10 6 4.5780 -6.4380 -0.3317 11 6 5.1766 -7.5518 -0.9646 12 1 6.2420 -7.5645 -1.1411 13 6 4.3885 -8.6377 -1.3622 14 7 3.1968 -8.8040 -0.8485 15 14 5.0379 -9.8498 -2.6265 16 1 6.2829 -10.4779 -2.1161 17 1 4.0183 -10.9005 -2.8742 18 1 5.3286 -9.1340 -3.8948 19 6 3.2145 -6.1556 -0.5348 20 6 2.6415 -5.0713 0.0896 21 6 2.3585 -2.1802 -0.6495 22 6 2.0667 -0.7724 -1.2269 23 1 2.9806 -0.3125 -1.6027 24 8 1.0766 -0.8390 -2.2552 25 1 -0.3633 0.5039 0.8956 26 1 -0.3633 0.5237 -0.8842 27 1 -0.3633 -1.0276 -0.0115 28 1 3.1500 1.4201 -0.0113 29 1 1.6948 1.9576 -0.8842 30 1 1.7133 1.9507 0.8957 31 1 1.2323 -1.1531 1.8124 32 1 2.6804 -0.1101 1.8376 33 1 1.7144 -3.2766 1.7709 34 1 3.2735 -2.8680 2.5265 35 1 5.3348 -3.8749 1.7515 36 1 6.3910 -5.8055 0.6606 37 1 2.6504 -9.5564 -1.1244 38 1 2.6193 -6.7892 -1.1756 39 1 1.5943 -4.8547 -0.0618 40 1 3.1106 -2.6934 -1.2487 41 1 1.4434 -2.7695 -0.5916 42 1 1.3634 -1.3140 -3.0471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336251630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:51 Heat of formation + Delta-G solvation = -54.702041 kcal Electronic energy + Delta-G solvation = -21451.513669 eV Core-core repulsion = 18394.667842 eV Total energy + Delta-G solvation = -3056.845827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95733 -39.36208 -36.96817 -35.82260 -34.73520 -32.00936 -31.22088 -29.81769 -28.34039 -28.20199 -26.10142 -24.63221 -23.09049 -22.36171 -21.41072 -19.94488 -19.22500 -18.27340 -17.18258 -16.88141 -16.32501 -15.88509 -15.74253 -15.39891 -15.01647 -14.93711 -14.64709 -14.25893 -14.12362 -13.80020 -13.50601 -13.47019 -13.18917 -12.97233 -12.88781 -12.83481 -12.62671 -12.48625 -12.30351 -12.10578 -11.85370 -11.72980 -11.36721 -11.24496 -11.23330 -10.98940 -10.83027 -9.46148 -9.32972 -9.15209 -8.65353 -6.33872 0.93389 1.15213 1.36946 1.47882 1.52372 2.19706 2.65451 2.98763 3.49677 3.52244 3.70439 3.82332 3.96367 4.22478 4.28516 4.30590 4.31580 4.47564 4.50423 4.61098 4.69331 4.77024 4.81917 4.84222 4.92081 4.98062 5.03362 5.04970 5.08543 5.15479 5.23029 5.36081 5.36402 5.46390 5.47631 5.69945 5.87598 5.97477 6.09398 6.14717 6.26384 6.38956 6.69390 6.82283 6.93729 7.03430 8.31518 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.004036 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.905457 B = 6936.288953 C = 7351.998857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.130 4.130 4 C 0.040 3.960 5 N -0.514 5.514 6 C 0.117 3.883 7 C -0.202 4.202 8 C -0.071 4.071 9 C -0.245 4.245 10 C 0.082 3.918 11 C -0.503 4.503 12 H 0.074 0.926 13 C 0.037 3.963 14 N -0.825 5.825 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.261 1.261 19 C -0.190 4.190 20 C -0.091 4.091 21 C 0.021 3.979 22 C 0.109 3.891 23 H 0.073 0.927 24 O -0.568 6.568 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.288 0.712 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 14.539 0.057 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.068 4.068 3 C -0.187 4.187 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.010 4.010 7 C -0.203 4.203 8 C -0.090 4.090 9 C -0.265 4.265 10 C 0.080 3.920 11 C -0.533 4.533 12 H 0.093 0.907 13 C -0.178 4.178 14 N -0.451 5.451 15 Si 0.801 3.199 16 H -0.183 1.183 17 H -0.191 1.191 18 H -0.185 1.185 19 C -0.209 4.209 20 C -0.110 4.110 21 C -0.108 4.108 22 C 0.050 3.950 23 H 0.091 0.909 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.158 14.861 0.511 15.441 hybrid contribution -0.258 -1.755 -0.834 1.961 sum -4.417 13.106 -0.323 13.834 Atomic orbital electron populations 1.21567 0.93192 1.00953 1.01973 1.21442 0.96671 0.96350 0.92385 1.21811 1.01018 0.93164 1.02696 1.23168 0.95880 0.93114 0.96578 1.64831 1.50707 1.06239 1.02053 1.20864 0.97359 0.87495 0.95330 1.19234 0.94377 0.99807 1.06891 1.20637 0.94233 0.95793 0.98327 1.21164 0.99314 1.01093 1.04905 1.17942 0.92550 0.92043 0.89482 1.19831 0.95848 1.01586 1.36022 0.90748 1.26749 0.94467 0.99955 0.96621 1.69881 1.10994 1.28477 1.35735 0.85278 0.79114 0.77022 0.78463 1.18324 1.19144 1.18497 1.21207 0.96364 0.98744 1.04614 1.20669 0.97520 0.95175 0.97655 1.23671 0.97883 0.97566 0.91680 1.22758 0.90628 0.93387 0.88258 0.90865 1.86438 1.42271 1.79615 1.29114 0.91520 0.92048 0.94598 0.92170 0.92170 0.90895 0.93500 0.88840 0.95303 0.89914 0.86762 0.88681 0.90156 0.88459 0.88858 0.92080 0.94612 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 7.55 71.98 0.54 -2.04 16 2 C -0.07 -1.50 0.95 -51.30 -0.05 -1.55 16 3 C -0.13 -2.27 8.23 71.98 0.59 -1.68 16 4 C 0.04 0.97 6.02 86.44 0.52 1.49 16 5 N -0.51 -15.82 5.39 -887.58 -4.78 -20.61 16 6 C 0.12 3.97 5.18 85.56 0.44 4.41 16 7 C -0.20 -8.55 4.62 -19.67 -0.09 -8.64 16 8 C -0.07 -3.16 9.67 22.22 0.21 -2.94 16 9 C -0.25 -12.29 9.80 22.73 0.22 -12.07 16 10 C 0.08 4.52 5.58 -21.29 -0.12 4.40 16 11 C -0.50 -27.68 9.05 23.46 0.21 -27.47 16 12 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 13 C 0.04 1.90 5.13 85.26 0.44 2.33 16 14 N -0.83 -43.80 10.98 21.83 0.24 -43.56 16 15 Si 0.98 38.56 29.60 68.60 2.03 40.59 16 16 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 17 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 C -0.19 -10.14 8.70 22.73 0.20 -9.94 16 20 C -0.09 -4.26 8.30 22.22 0.18 -4.07 16 21 C 0.02 0.65 4.69 86.65 0.41 1.06 16 22 C 0.11 2.75 3.84 31.80 0.12 2.88 16 23 H 0.07 1.78 7.86 -2.39 -0.02 1.76 16 24 O -0.57 -13.53 11.90 -148.98 -1.77 -15.31 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.34 7.65 -2.39 -0.02 1.33 16 27 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.05 1.13 7.11 -2.38 -0.02 1.11 16 32 H 0.09 1.99 7.69 -2.39 -0.02 1.98 16 33 H 0.03 0.97 7.75 -2.39 -0.02 0.95 16 34 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 35 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 36 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 37 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 38 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 39 H 0.09 4.04 7.37 -2.91 -0.02 4.01 16 40 H 0.06 2.22 7.73 -2.39 -0.02 2.20 16 41 H 0.04 1.23 7.07 -2.39 -0.02 1.21 16 42 H 0.39 6.85 9.12 -74.06 -0.68 6.18 16 Total: -1.00 -60.49 333.11 -0.12 -60.61 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.32 Total: 32.10 kcal Atomic # 6 Polarization: -57.66 SS G_CDS: 3.84 Total: -53.83 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -4.54 Total: -64.17 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.77 Total: -15.31 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -60.49 -0.12 -60.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336251630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.911 kcal (2) G-P(sol) polarization free energy of solvation -60.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds