Wall clock time and date at job start Mon Mar 30 2020 02:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47389 * 2 1 4 4 C 1.38171 * 119.97321 * 266.42012 * 3 2 1 5 5 C 1.38704 * 119.94649 * 180.31034 * 4 3 2 6 6 O 1.35893 * 120.06061 * 179.68270 * 5 4 3 7 7 C 1.42899 * 117.00410 * 180.02562 * 6 5 4 8 8 C 1.38762 * 119.88619 * 359.70982 * 5 4 3 9 9 C 1.38126 * 119.94398 * 359.97438 * 8 5 4 10 10 C 1.38245 * 119.97472 * 86.16667 * 3 2 1 11 11 C 1.50703 * 119.93911 * 359.97438 * 10 3 2 12 12 N 1.46503 * 109.46998 * 183.11933 * 11 10 3 13 13 C 1.36936 * 119.99720 * 90.90382 * 12 11 10 14 14 H 1.08004 * 120.00241 * 28.88964 * 13 12 11 15 15 C 1.38808 * 120.00070 * 208.89612 * 13 12 11 16 16 N 1.31616 * 120.00336 * 22.55839 * 15 13 12 17 17 Si 1.86804 * 119.99764 * 202.56480 * 15 13 12 18 18 H 1.48504 * 109.46894 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47109 * 299.99481 * 17 15 13 20 20 H 1.48495 * 109.47388 * 59.99933 * 17 15 13 21 21 C 1.46492 * 120.00384 * 270.90629 * 12 11 10 22 22 C 1.53006 * 117.50099 * 7.96125 * 21 12 11 23 23 C 1.53002 * 117.50127 * 299.29986 * 21 12 11 24 24 H 1.08997 * 109.47296 * 300.00461 * 1 2 3 25 25 H 1.09001 * 109.47005 * 60.00097 * 1 2 3 26 26 H 1.08995 * 109.46922 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47328 * 239.99951 * 2 1 3 28 28 H 1.09001 * 109.47005 * 119.99903 * 2 1 3 29 29 H 1.08001 * 120.02651 * 0.04427 * 4 3 2 30 30 H 1.08998 * 109.47456 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.47537 * 300.00605 * 7 6 5 32 32 H 1.09006 * 109.46965 * 60.00499 * 7 6 5 33 33 H 1.07994 * 120.02544 * 179.97438 * 8 5 4 34 34 H 1.07998 * 119.97281 * 180.02562 * 9 8 5 35 35 H 1.09000 * 109.46943 * 63.12833 * 11 10 3 36 36 H 1.08991 * 109.47407 * 303.12295 * 11 10 3 37 37 H 0.96999 * 120.00125 * 174.95341 * 16 15 13 38 38 H 1.09002 * 115.55404 * 153.62613 * 21 12 11 39 39 H 1.09005 * 117.49511 * 359.97438 * 22 21 12 40 40 H 1.08994 * 117.50480 * 145.02083 * 22 21 12 41 41 H 1.09001 * 117.49779 * 214.97921 * 23 21 12 42 42 H 1.09003 * 117.49322 * 359.97091 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3330 2.0467 -1.1946 5 6 2.8015 3.3522 -1.1935 6 8 3.1040 3.9678 -2.3667 7 6 3.5818 5.3124 -2.2895 8 6 2.9613 4.0285 0.0075 9 6 2.6533 3.4006 1.1986 10 6 2.1872 2.0987 1.1949 11 6 1.8526 1.4157 2.4959 12 7 2.0280 2.3598 3.6023 13 6 0.9746 3.1287 4.0198 14 1 -0.0365 2.7658 3.9082 15 6 1.2062 4.3746 4.5862 16 7 2.3300 5.0125 4.3364 17 14 -0.0770 5.1458 5.7034 18 1 0.4082 6.4672 6.1763 19 1 -1.3452 5.3238 4.9515 20 1 -0.3140 4.2593 6.8709 21 6 3.3303 2.4815 4.2620 22 6 4.5119 1.7383 3.6353 23 6 3.8966 1.2339 4.9430 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2074 1.5184 -2.1281 30 1 3.7844 5.6842 -3.2939 31 1 2.8268 5.9397 -1.8157 32 1 4.4983 5.3390 -1.7001 33 1 3.3263 5.0449 0.0110 34 1 2.7771 3.9266 2.1337 35 1 2.5147 0.5617 2.6387 36 1 0.8182 1.0733 2.4710 37 1 2.4614 5.9131 4.6719 38 1 3.5327 3.4454 4.7289 39 1 4.3201 1.1586 2.7324 40 1 5.4915 2.2131 3.6904 41 1 4.4717 1.3771 5.8579 42 1 3.2998 0.3227 4.9006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337529127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:47 Heat of formation + Delta-G solvation = 19.533734 kcal Electronic energy + Delta-G solvation = -22059.250998 eV Core-core repulsion = 19005.624276 eV Total energy + Delta-G solvation = -3053.626722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12167 -39.43085 -38.12476 -35.01539 -34.61746 -33.35601 -31.11952 -30.14359 -28.34451 -26.79946 -25.28710 -24.58454 -23.01211 -22.66710 -21.46066 -20.83082 -18.84860 -18.50786 -17.29290 -16.93320 -16.60611 -16.40815 -16.01460 -15.49503 -15.22932 -15.07549 -14.67734 -14.34814 -14.02926 -14.02386 -13.35570 -13.17421 -13.08954 -12.90017 -12.80033 -12.71527 -12.65727 -12.22697 -12.15498 -12.06752 -11.94394 -11.73285 -11.52979 -11.37199 -11.10370 -11.00033 -10.37114 -9.55776 -8.79134 -8.50962 -7.82432 -5.31935 0.55093 0.71327 1.47814 1.51486 1.56564 2.44331 2.50843 2.97018 3.21760 3.45849 3.53386 3.96159 4.09789 4.25985 4.28210 4.36177 4.39401 4.43319 4.44903 4.53432 4.57172 4.65170 4.67595 4.72644 4.78846 4.84350 4.90273 4.94938 4.97881 5.12964 5.16110 5.27463 5.42157 5.43762 5.48053 5.59336 5.68210 5.77145 5.87298 6.04204 6.14452 6.43922 6.58367 7.19364 7.86702 8.34621 9.16795 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.006671 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.748128 B = 4195.970743 C = 4737.707628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.051 4.051 4 C -0.167 4.167 5 C 0.108 3.892 6 O -0.333 6.333 7 C 0.023 3.977 8 C -0.230 4.230 9 C -0.069 4.069 10 C -0.140 4.140 11 C 0.185 3.815 12 N -0.562 5.562 13 C -0.263 4.263 14 H 0.062 0.938 15 C -0.032 4.032 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.294 1.294 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.128 3.872 22 C -0.201 4.201 23 C -0.221 4.221 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.253 0.747 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -5.831 -9.892 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.052 4.052 4 C -0.186 4.186 5 C 0.063 3.937 6 O -0.247 6.247 7 C -0.071 4.071 8 C -0.248 4.248 9 C -0.087 4.087 10 C -0.143 4.143 11 C 0.060 3.940 12 N -0.278 5.278 13 C -0.392 4.392 14 H 0.080 0.920 15 C -0.229 4.229 16 N -0.559 5.559 17 Si 0.786 3.214 18 H -0.220 1.220 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.019 3.981 22 C -0.240 4.240 23 C -0.261 4.261 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.728 -5.758 -9.981 11.651 hybrid contribution -0.357 1.255 0.874 1.571 sum 1.371 -4.503 -9.106 10.251 Atomic orbital electron populations 1.21697 0.94240 1.02504 1.01507 1.20553 0.96566 0.90819 1.03634 1.19802 0.97200 0.97115 0.91094 1.20337 1.06629 0.92787 0.98799 1.19095 0.97074 0.93142 0.84392 1.85960 1.80769 1.29709 1.28290 1.23225 0.98738 0.79933 1.05244 1.21318 1.09764 1.01158 0.92595 1.21562 0.93337 0.95084 0.98734 1.20815 1.01709 0.95296 0.96439 1.19917 0.98903 0.91524 0.83672 1.43544 1.07306 1.43569 1.33391 1.19240 0.87701 0.97263 1.35043 0.91986 1.25526 0.98836 0.96339 1.02223 1.69877 1.27051 1.11445 1.47494 0.85507 0.79172 0.77019 0.79704 1.22024 1.20754 1.20838 1.21476 0.83876 0.95181 0.97548 1.23145 0.98411 1.05932 0.96472 1.23435 1.05661 1.01515 0.95496 0.94090 0.92749 0.90285 0.89234 0.90638 0.84095 0.85504 0.93097 0.92707 0.86200 0.84388 0.91895 0.92289 0.93760 0.86800 0.89779 0.89538 0.89337 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.86 71.98 0.71 -2.73 16 2 C -0.08 -2.02 5.55 29.85 0.17 -1.85 16 3 C -0.05 -1.73 5.13 -19.88 -0.10 -1.83 16 4 C -0.17 -5.52 9.63 22.37 0.22 -5.31 16 5 C 0.11 3.84 6.69 22.51 0.15 3.99 16 6 O -0.33 -10.44 10.50 -92.35 -0.97 -11.41 16 7 C 0.02 0.55 9.81 113.37 1.11 1.66 16 8 C -0.23 -9.14 9.04 22.37 0.20 -8.94 16 9 C -0.07 -3.10 9.16 22.25 0.20 -2.90 16 10 C -0.14 -5.65 5.66 -19.85 -0.11 -5.76 16 11 C 0.19 7.56 4.07 85.63 0.35 7.91 16 12 N -0.56 -26.82 1.63 -682.34 -1.11 -27.93 16 13 C -0.26 -13.87 9.16 84.03 0.77 -13.10 16 14 H 0.06 3.28 7.93 -2.91 -0.02 3.26 16 15 C -0.03 -1.72 5.03 84.86 0.43 -1.29 16 16 N -0.91 -50.24 10.00 21.65 0.22 -50.03 16 17 Si 0.96 43.82 29.61 68.60 2.03 45.85 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C 0.13 5.93 5.11 45.00 0.23 6.16 16 22 C -0.20 -7.88 9.72 30.62 0.30 -7.58 16 23 C -0.22 -8.56 10.15 30.62 0.31 -8.25 16 24 H 0.04 1.16 6.85 -2.39 -0.02 1.14 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.09 1.87 8.06 -2.39 -0.02 1.85 16 28 H 0.08 1.90 6.87 -2.39 -0.02 1.89 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 32 H 0.05 1.27 7.66 -2.38 -0.02 1.26 16 33 H 0.12 4.49 6.30 -2.91 -0.02 4.47 16 34 H 0.14 7.24 5.07 -2.91 -0.01 7.22 16 35 H 0.06 2.37 5.89 -2.39 -0.01 2.36 16 36 H 0.06 2.37 6.63 -2.39 -0.02 2.36 16 37 H 0.25 13.63 8.32 -92.71 -0.77 12.86 16 38 H 0.11 6.07 5.58 -2.39 -0.01 6.06 16 39 H 0.08 3.23 6.27 -2.38 -0.01 3.22 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -59.06 332.83 6.10 -52.96 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 1.01 Total: 30.36 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 4.93 Total: -39.81 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -0.90 Total: -77.96 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.97 Total: -11.41 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -59.06 6.10 -52.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337529127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.492 kcal (2) G-P(sol) polarization free energy of solvation -59.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds