Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37091 * 120.00180 * 2 1 4 4 H 1.07996 * 120.00229 * 142.82459 * 3 2 1 5 5 C 1.38956 * 119.99937 * 322.82156 * 3 2 1 6 6 N 1.31406 * 120.00141 * 158.41198 * 5 3 2 7 7 Si 1.86798 * 119.99703 * 338.41251 * 5 3 2 8 8 H 1.48500 * 109.47444 * 95.72275 * 7 5 3 9 9 H 1.48507 * 109.46834 * 215.71660 * 7 5 3 10 10 H 1.48502 * 109.47646 * 335.71761 * 7 5 3 11 11 C 1.34778 * 119.99431 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99365 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00467 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.47365 * 180.02562 * 13 11 2 15 15 C 1.52991 * 109.47313 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47370 * 59.99799 * 15 14 13 17 17 C 1.53000 * 109.47223 * 299.99678 * 15 14 13 18 18 C 1.50704 * 109.47271 * 180.02562 * 15 14 13 19 19 C 1.38236 * 120.00006 * 180.02562 * 18 15 14 20 20 C 1.38243 * 120.00076 * 179.97438 * 19 18 15 21 21 C 1.38237 * 119.99576 * 359.95222 * 20 19 18 22 22 C 1.38232 * 120.00102 * 0.27685 * 21 20 19 23 23 C 1.38232 * 119.99884 * 359.96917 * 18 15 14 24 24 H 1.09003 * 109.47423 * 265.14003 * 1 2 3 25 25 H 1.09002 * 109.46887 * 25.13877 * 1 2 3 26 26 H 1.09000 * 109.47392 * 145.13937 * 1 2 3 27 27 H 0.96996 * 120.00397 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.46869 * 59.99755 * 13 11 2 29 29 H 1.08998 * 109.47124 * 300.00063 * 13 11 2 30 30 H 1.09004 * 109.47176 * 59.99589 * 14 13 11 31 31 H 1.08998 * 109.46987 * 300.00068 * 14 13 11 32 32 H 1.08998 * 109.46954 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47092 * 300.00177 * 16 15 14 34 34 H 1.08998 * 109.47078 * 60.00126 * 16 15 14 35 35 H 1.09002 * 109.47636 * 300.00262 * 17 15 14 36 36 H 1.09001 * 109.46842 * 60.00066 * 17 15 14 37 37 H 1.08997 * 109.47520 * 180.02562 * 17 15 14 38 38 H 1.07995 * 120.00181 * 359.97101 * 19 18 15 39 39 H 1.07998 * 119.99812 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.99577 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.00023 * 179.72175 * 22 21 20 42 42 H 1.07998 * 120.00373 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0659 1.2823 0.5651 5 6 1.6676 2.2683 -0.7272 6 7 2.0434 3.4889 -0.4178 7 14 0.4841 1.9865 -2.1447 8 1 -0.9112 2.1585 -1.6664 9 1 0.7618 2.9681 -3.2240 10 1 0.6608 0.6091 -2.6709 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0017 14 6 2.3794 -3.6353 0.0027 15 6 1.6144 -4.9602 0.0033 16 6 0.7352 -5.0420 -1.2462 17 6 0.7344 -5.0405 1.2523 18 6 2.5937 -6.1057 0.0049 19 6 2.1328 -7.4090 0.0051 20 6 3.0311 -8.4598 0.0061 21 6 4.3902 -8.2072 0.0059 22 6 4.8510 -6.9040 0.0105 23 6 3.9527 -5.8532 0.0051 24 1 -0.3634 -0.0871 1.0240 25 1 -0.3633 0.9304 -0.4366 26 1 -0.3634 -0.8432 -0.5874 27 1 1.7060 4.2436 -0.9251 28 1 0.7583 -2.5306 -0.8880 29 1 0.7590 -2.5295 0.8919 30 1 3.0062 -3.5768 0.8927 31 1 3.0061 -3.5784 -0.8873 32 1 0.1905 -5.9862 -1.2460 33 1 0.0269 -4.2135 -1.2469 34 1 1.3621 -4.9849 -2.1360 35 1 1.3608 -4.9823 2.1425 36 1 0.0261 -4.2120 1.2516 37 1 0.1897 -5.9847 1.2530 38 1 1.0711 -7.6063 0.0046 39 1 2.6710 -9.4780 0.0067 40 1 5.0920 -9.0281 0.0063 41 1 5.9128 -6.7066 0.0149 42 1 4.3128 -4.8350 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338230188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = -12.419516 kcal Electronic energy + Delta-G solvation = -21353.139373 eV Core-core repulsion = 18298.127054 eV Total energy + Delta-G solvation = -3055.012319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00955 -38.64440 -36.59719 -34.73902 -32.08634 -31.30695 -30.77065 -29.21423 -27.27634 -26.47978 -25.74941 -23.98835 -22.55819 -21.79557 -19.13436 -18.38513 -17.09214 -16.97758 -16.05828 -15.59039 -15.10828 -15.02821 -14.73351 -14.17729 -14.01128 -13.55225 -13.45354 -13.28280 -13.12466 -12.63974 -12.44205 -12.27487 -12.19024 -12.04340 -11.71870 -11.61798 -11.30745 -11.27013 -11.08565 -10.77604 -10.46265 -10.36981 -10.32544 -10.24233 -9.90544 -9.04626 -8.91507 -8.68837 -8.43564 -7.70368 -6.37088 -3.93547 1.36089 1.40183 3.03609 3.22691 3.27024 3.78441 3.79659 4.16246 4.41316 4.62501 4.77149 4.96476 4.99904 5.07122 5.10258 5.11864 5.29625 5.46733 5.51801 5.54459 5.64412 5.67672 5.69402 5.78205 5.86574 5.91884 5.99811 6.01866 6.04794 6.10939 6.14743 6.20521 6.26891 6.30576 6.47573 6.53646 6.55191 6.58338 6.72127 7.01320 7.57982 8.32228 8.55270 9.00862 9.35730 9.82698 10.75424 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033299 B = 0.003969 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.671337 B = 7053.685368 C = 7410.595477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.474 5.474 3 C -0.316 4.316 4 H 0.104 0.896 5 C 0.057 3.943 6 N -0.867 5.867 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.463 3.537 12 O -0.568 6.568 13 C -0.139 4.139 14 C -0.090 4.090 15 C -0.029 4.029 16 C -0.140 4.140 17 C -0.140 4.140 18 C -0.063 4.063 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -21.045 0.155 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.197 5.197 3 C -0.444 4.444 4 H 0.122 0.878 5 C -0.148 4.148 6 N -0.503 5.503 7 Si 0.708 3.292 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.190 1.190 11 C 0.251 3.749 12 O -0.450 6.450 13 C -0.179 4.179 14 C -0.128 4.128 15 C -0.029 4.029 16 C -0.197 4.197 17 C -0.197 4.197 18 C -0.063 4.063 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.135 4.135 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.016 -20.810 0.123 21.195 hybrid contribution -0.745 0.078 -0.800 1.096 sum -4.761 -20.733 -0.676 21.283 Atomic orbital electron populations 1.21975 0.83584 1.01442 1.00872 1.43708 1.03942 1.05863 1.66157 1.19067 1.10077 0.85638 1.29579 0.87811 1.25372 0.97502 0.94789 0.97138 1.69756 1.44077 0.98075 1.38430 0.86915 0.80177 0.78934 0.83128 1.20345 1.21518 1.18960 1.20356 0.88231 0.84862 0.81424 1.90542 1.14033 1.87144 1.53247 1.21764 0.99294 0.93941 1.02905 1.21425 0.97188 0.90708 1.03487 1.19586 0.94167 0.92985 0.96148 1.21945 0.99308 1.01652 0.96824 1.21941 0.99289 1.01664 0.96781 1.19884 0.94005 0.94067 0.98305 1.20965 0.99455 0.92188 1.00993 1.21076 0.93448 0.98704 1.00975 1.21105 0.95608 0.96735 1.01453 1.21191 0.99690 0.92774 1.00053 1.21407 0.92802 1.00058 0.99277 0.93121 0.91758 0.92781 0.91663 0.90077 0.90060 0.91006 0.91043 0.92800 0.91784 0.92448 0.92436 0.91743 0.92827 0.86372 0.86513 0.86555 0.86221 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 8.78 59.85 0.53 1.80 16 2 N -0.47 -11.62 2.59 -122.19 -0.32 -11.94 16 3 C -0.32 -9.15 9.37 -14.93 -0.14 -9.29 16 4 H 0.10 3.37 7.90 -52.49 -0.41 2.96 16 5 C 0.06 1.61 5.29 -17.47 -0.09 1.52 16 6 N -0.87 -25.45 13.96 55.50 0.77 -24.67 16 7 Si 0.88 20.77 24.96 -169.99 -4.24 16.52 16 8 H -0.28 -6.02 6.69 56.52 0.38 -5.64 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.46 10.73 7.63 -10.99 -0.08 10.65 16 12 O -0.57 -15.36 15.85 5.54 0.09 -15.27 16 13 C -0.14 -2.30 3.61 -27.89 -0.10 -2.40 16 14 C -0.09 -1.37 2.22 -26.74 -0.06 -1.43 16 15 C -0.03 -0.35 0.63 -155.66 -0.10 -0.44 16 16 C -0.14 -1.53 7.94 37.16 0.29 -1.24 16 17 C -0.14 -1.50 7.93 37.16 0.29 -1.20 16 18 C -0.06 -0.76 4.76 -104.62 -0.50 -1.26 16 19 C -0.12 -1.27 8.71 -39.58 -0.34 -1.62 16 20 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 21 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.51 8.98 -39.58 -0.36 -1.87 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.34 3.42 -51.93 -0.18 1.17 16 26 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.08 1.22 5.70 -51.93 -0.30 0.92 16 29 H 0.08 1.18 6.39 -51.93 -0.33 0.85 16 30 H 0.07 1.17 7.47 -51.93 -0.39 0.78 16 31 H 0.07 1.18 7.47 -51.93 -0.39 0.79 16 32 H 0.05 0.51 7.39 -51.93 -0.38 0.12 16 33 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 37 H 0.05 0.50 7.39 -51.93 -0.38 0.11 16 38 H 0.12 1.08 7.10 -52.49 -0.37 0.70 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.13 1.82 5.90 -52.49 -0.31 1.51 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -32.62 326.79 -6.78 -39.40 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.15 Total: 2.96 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.85 Total: -11.93 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.46 Total: -36.61 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.24 Total: 16.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.62 -6.78 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338230188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.980 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds