Wall clock time and date at job start Mon Mar 30 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37091 * 120.00180 * 2 1 4 4 H 1.07996 * 120.00229 * 142.82459 * 3 2 1 5 5 C 1.38956 * 119.99937 * 322.82156 * 3 2 1 6 6 N 1.31406 * 120.00141 * 158.41198 * 5 3 2 7 7 Si 1.86798 * 119.99703 * 338.41251 * 5 3 2 8 8 H 1.48500 * 109.47444 * 95.72275 * 7 5 3 9 9 H 1.48507 * 109.46834 * 215.71660 * 7 5 3 10 10 H 1.48502 * 109.47646 * 335.71761 * 7 5 3 11 11 C 1.34778 * 119.99431 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99365 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00467 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.47365 * 180.02562 * 13 11 2 15 15 C 1.52991 * 109.47313 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47370 * 59.99799 * 15 14 13 17 17 C 1.53000 * 109.47223 * 299.99678 * 15 14 13 18 18 C 1.50704 * 109.47271 * 180.02562 * 15 14 13 19 19 C 1.38236 * 120.00006 * 180.02562 * 18 15 14 20 20 C 1.38243 * 120.00076 * 179.97438 * 19 18 15 21 21 C 1.38237 * 119.99576 * 359.95222 * 20 19 18 22 22 C 1.38232 * 120.00102 * 0.27685 * 21 20 19 23 23 C 1.38232 * 119.99884 * 359.96917 * 18 15 14 24 24 H 1.09003 * 109.47423 * 265.14003 * 1 2 3 25 25 H 1.09002 * 109.46887 * 25.13877 * 1 2 3 26 26 H 1.09000 * 109.47392 * 145.13937 * 1 2 3 27 27 H 0.96996 * 120.00397 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.46869 * 59.99755 * 13 11 2 29 29 H 1.08998 * 109.47124 * 300.00063 * 13 11 2 30 30 H 1.09004 * 109.47176 * 59.99589 * 14 13 11 31 31 H 1.08998 * 109.46987 * 300.00068 * 14 13 11 32 32 H 1.08998 * 109.46954 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47092 * 300.00177 * 16 15 14 34 34 H 1.08998 * 109.47078 * 60.00126 * 16 15 14 35 35 H 1.09002 * 109.47636 * 300.00262 * 17 15 14 36 36 H 1.09001 * 109.46842 * 60.00066 * 17 15 14 37 37 H 1.08997 * 109.47520 * 180.02562 * 17 15 14 38 38 H 1.07995 * 120.00181 * 359.97101 * 19 18 15 39 39 H 1.07998 * 119.99812 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.99577 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.00023 * 179.72175 * 22 21 20 42 42 H 1.07998 * 120.00373 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0659 1.2823 0.5651 5 6 1.6676 2.2683 -0.7272 6 7 2.0434 3.4889 -0.4178 7 14 0.4841 1.9865 -2.1447 8 1 -0.9112 2.1585 -1.6664 9 1 0.7618 2.9681 -3.2240 10 1 0.6608 0.6091 -2.6709 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0017 14 6 2.3794 -3.6353 0.0027 15 6 1.6144 -4.9602 0.0033 16 6 0.7352 -5.0420 -1.2462 17 6 0.7344 -5.0405 1.2523 18 6 2.5937 -6.1057 0.0049 19 6 2.1328 -7.4090 0.0051 20 6 3.0311 -8.4598 0.0061 21 6 4.3902 -8.2072 0.0059 22 6 4.8510 -6.9040 0.0105 23 6 3.9527 -5.8532 0.0051 24 1 -0.3634 -0.0871 1.0240 25 1 -0.3633 0.9304 -0.4366 26 1 -0.3634 -0.8432 -0.5874 27 1 1.7060 4.2436 -0.9251 28 1 0.7583 -2.5306 -0.8880 29 1 0.7590 -2.5295 0.8919 30 1 3.0062 -3.5768 0.8927 31 1 3.0061 -3.5784 -0.8873 32 1 0.1905 -5.9862 -1.2460 33 1 0.0269 -4.2135 -1.2469 34 1 1.3621 -4.9849 -2.1360 35 1 1.3608 -4.9823 2.1425 36 1 0.0261 -4.2120 1.2516 37 1 0.1897 -5.9847 1.2530 38 1 1.0711 -7.6063 0.0046 39 1 2.6710 -9.4780 0.0067 40 1 5.0920 -9.0281 0.0063 41 1 5.9128 -6.7066 0.0149 42 1 4.3128 -4.8350 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338230188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:04 Heat of formation + Delta-G solvation = -32.171657 kcal Electronic energy + Delta-G solvation = -21353.995890 eV Core-core repulsion = 18298.127054 eV Total energy + Delta-G solvation = -3055.868836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07374 -40.25616 -37.64673 -36.65697 -34.16228 -32.44760 -31.72161 -30.19642 -28.21004 -28.08647 -27.33234 -25.44908 -23.48861 -22.81724 -20.64841 -19.58712 -19.06490 -18.13127 -17.71972 -17.19825 -16.59770 -15.96055 -15.78738 -15.53991 -15.28958 -14.69548 -14.65479 -14.40827 -14.40505 -14.24090 -13.94522 -13.71201 -13.38743 -13.19291 -13.11012 -12.69109 -12.58398 -12.41472 -12.19929 -12.15915 -12.03273 -11.82168 -11.58201 -11.34805 -11.25644 -11.05388 -10.34330 -9.76270 -9.69827 -9.52774 -8.52585 -6.15332 0.52615 0.55238 1.19276 1.32672 1.45420 1.97961 2.17540 2.75803 2.94314 2.95484 3.67024 3.73799 4.03621 4.06070 4.20337 4.22980 4.31003 4.36155 4.42107 4.44541 4.45945 4.59832 4.68825 4.69756 4.80551 4.84253 4.90814 5.01032 5.07836 5.10420 5.12726 5.22717 5.26818 5.31813 5.41774 5.53368 5.54144 5.66659 5.69025 5.83104 6.02158 6.19278 6.57081 6.94674 7.31336 7.90141 8.65377 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033299 B = 0.003969 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.671337 B = 7053.685368 C = 7410.595477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.488 5.488 3 C -0.341 4.341 4 H 0.038 0.962 5 C 0.007 3.993 6 N -0.915 5.915 7 Si 0.958 3.042 8 H -0.236 1.236 9 H -0.291 1.291 10 H -0.257 1.257 11 C 0.451 3.549 12 O -0.622 6.622 13 C -0.123 4.123 14 C -0.083 4.083 15 C -0.020 4.020 16 C -0.140 4.140 17 C -0.139 4.139 18 C -0.075 4.075 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.280 0.720 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 -24.170 -0.945 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.210 5.210 3 C -0.469 4.469 4 H 0.056 0.944 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.781 3.219 8 H -0.160 1.160 9 H -0.219 1.219 10 H -0.181 1.181 11 C 0.242 3.758 12 O -0.508 6.508 13 C -0.162 4.162 14 C -0.121 4.121 15 C -0.020 4.020 16 C -0.197 4.197 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.164 4.164 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.144 0.856 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.982 -23.945 -0.953 25.258 hybrid contribution 0.632 1.035 -0.365 1.267 sum -7.350 -22.909 -1.318 24.095 Atomic orbital electron populations 1.22259 0.79993 1.02828 1.03436 1.43879 1.06161 1.04616 1.66349 1.18683 1.09340 0.88431 1.30437 0.94383 1.26251 1.00039 0.93752 0.99397 1.69880 1.46258 0.99312 1.39798 0.85704 0.79275 0.78883 0.78026 1.16026 1.21859 1.18072 1.21610 0.88084 0.86727 0.79367 1.90512 1.16932 1.88202 1.55137 1.21771 0.99133 0.89735 1.05591 1.21326 0.96889 0.92658 1.01250 1.19509 0.94111 0.90617 0.97812 1.21963 0.99051 1.03352 0.95312 1.21955 0.99027 1.03346 0.95263 1.19979 0.93483 0.95100 0.98902 1.21222 1.00856 0.91373 1.00286 1.21476 0.93144 1.00033 0.99430 1.21424 0.96634 0.96598 1.00574 1.21372 0.99994 0.93329 1.00373 1.21380 0.94073 0.99411 1.01523 0.90620 0.92747 0.88206 0.91027 0.87124 0.86975 0.93427 0.93498 0.90528 0.90767 0.93700 0.93672 0.90724 0.90578 0.84016 0.83591 0.84217 0.85631 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.03 8.78 127.77 1.12 3.15 16 2 N -0.49 -23.95 2.59 -658.88 -1.70 -25.65 16 3 C -0.34 -20.69 9.37 84.04 0.79 -19.91 16 4 H 0.04 2.73 7.90 -2.91 -0.02 2.70 16 5 C 0.01 0.41 5.29 84.93 0.45 0.86 16 6 N -0.91 -55.65 13.96 21.66 0.30 -55.35 16 7 Si 0.96 42.11 24.96 68.60 1.71 43.82 16 8 H -0.24 -8.84 6.69 99.48 0.67 -8.18 16 9 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 11 C 0.45 21.27 7.63 87.66 0.67 21.94 16 12 O -0.62 -35.89 15.85 -3.08 -0.05 -35.94 16 13 C -0.12 -3.82 3.61 29.85 0.11 -3.72 16 14 C -0.08 -2.55 2.22 30.59 0.07 -2.48 16 15 C -0.02 -0.45 0.63 -52.93 -0.03 -0.48 16 16 C -0.14 -2.56 7.94 71.98 0.57 -1.99 16 17 C -0.14 -2.53 7.93 71.98 0.57 -1.96 16 18 C -0.07 -1.74 4.76 -19.87 -0.09 -1.83 16 19 C -0.12 -2.21 8.71 22.27 0.19 -2.02 16 20 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 23 C -0.15 -3.91 8.98 22.27 0.20 -3.71 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.05 2.06 3.42 -2.39 -0.01 2.05 16 26 H 0.10 2.65 6.64 -2.39 -0.02 2.63 16 27 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.11 2.85 5.70 -2.39 -0.01 2.83 16 29 H 0.11 2.85 6.39 -2.39 -0.02 2.84 16 30 H 0.05 1.65 7.47 -2.38 -0.02 1.64 16 31 H 0.05 1.64 7.47 -2.39 -0.02 1.62 16 32 H 0.08 1.08 7.39 -2.39 -0.02 1.06 16 33 H 0.07 1.20 6.43 -2.39 -0.02 1.19 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.20 6.43 -2.39 -0.02 1.18 16 37 H 0.08 1.06 7.39 -2.39 -0.02 1.05 16 38 H 0.14 1.91 7.10 -2.91 -0.02 1.89 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.11 3.32 5.90 -2.91 -0.02 3.30 16 Total: -1.00 -78.40 326.79 6.51 -71.89 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.97 Total: 20.35 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.28 Total: -19.11 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -1.40 Total: -81.00 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.05 Total: -35.94 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.71 Total: 43.82 kcal Total: -78.40 6.51 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338230188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.723 kcal (2) G-P(sol) polarization free energy of solvation -78.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds