Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 C 1.53002 * 109.47461 * 239.99435 * 2 1 3 5 5 C 1.53010 * 109.47216 * 119.99479 * 2 1 3 6 6 C 1.53005 * 109.46802 * 59.99895 * 5 2 1 7 7 N 1.46502 * 109.46802 * 180.02562 * 6 5 2 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47295 * 300.00426 * 1 2 3 25 25 H 1.08996 * 109.46932 * 60.00543 * 1 2 3 26 26 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47508 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46821 * 299.99487 * 3 2 1 29 29 H 1.08996 * 109.47666 * 59.99263 * 3 2 1 30 30 H 1.08997 * 109.47155 * 300.00003 * 4 2 1 31 31 H 1.08996 * 109.47029 * 60.00081 * 4 2 1 32 32 H 1.08998 * 109.46789 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47066 * 300.00235 * 5 2 1 34 34 H 1.08994 * 109.47133 * 180.02562 * 5 2 1 35 35 H 1.09000 * 109.47033 * 60.00319 * 6 5 2 36 36 H 1.09002 * 109.46906 * 300.00307 * 6 5 2 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7212 1.2494 6 6 1.5299 -2.1637 1.2495 7 7 2.0178 -2.8540 2.4460 8 6 1.6925 -4.1445 2.6592 9 8 0.9938 -4.7355 1.8586 10 6 2.1836 -4.8400 3.8652 11 6 2.9830 -4.1555 4.7887 12 6 3.4432 -4.7951 5.9011 13 6 3.1042 -6.1438 6.1263 14 6 3.5729 -6.8084 7.2796 15 1 3.0260 -7.6504 7.6774 16 6 4.7488 -6.3755 7.9090 17 7 5.5819 -5.5964 7.2720 18 14 5.1240 -6.9127 9.6583 19 1 5.2123 -8.3941 9.7130 20 1 6.4170 -6.3240 10.0903 21 1 4.0412 -6.4477 10.5620 22 6 2.2952 -6.8269 5.1968 23 6 1.8448 -6.1807 4.0843 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2076 -2.1392 32 1 3.1300 -0.7217 -1.2488 33 1 1.6766 -0.2073 2.1393 34 1 3.1300 -0.7208 1.2496 35 1 1.8933 -2.6776 0.3595 36 1 0.4399 -2.1636 1.2494 37 1 2.5749 -2.3824 3.0848 38 1 3.2385 -3.1202 4.6177 39 1 4.0632 -4.2674 6.6108 40 1 6.3951 -5.2966 7.7075 41 1 2.0324 -7.8608 5.3655 42 1 1.2250 -6.7036 3.3710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340072150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -52.528354 kcal Electronic energy + Delta-G solvation = -20507.738409 eV Core-core repulsion = 17450.986840 eV Total energy + Delta-G solvation = -3056.751569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.23628 -38.04680 -36.97854 -34.00648 -33.84968 -30.51306 -29.44695 -28.83018 -27.44561 -27.42270 -25.86450 -23.25916 -21.65756 -20.86687 -19.72119 -18.66188 -17.51647 -16.70867 -15.82579 -15.36473 -15.33329 -14.43627 -14.35041 -14.22170 -13.97667 -13.41759 -13.31414 -13.15981 -12.73353 -12.52605 -12.10589 -12.08072 -11.89193 -11.83396 -11.82230 -11.41727 -11.28734 -11.25268 -10.98106 -10.82862 -10.70453 -10.61068 -10.58105 -10.04701 -9.54589 -9.35100 -8.93444 -8.51875 -7.71186 -7.52375 -7.01999 -4.59732 2.25126 2.93147 2.94563 2.98678 3.04204 3.74443 3.83161 3.89890 4.58419 4.62698 4.65362 4.69799 5.22445 5.23150 5.36582 5.48487 5.52609 5.58235 5.61452 5.63216 5.73586 5.82263 5.88903 5.93623 5.98283 6.05183 6.09636 6.18386 6.30373 6.32107 6.33183 6.77623 6.83691 6.97753 7.08920 7.14461 7.44538 7.66520 7.80255 7.86593 8.08133 8.28124 8.40624 8.63910 8.76116 9.11535 9.90168 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.003196 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.183385 B = 8757.749402 C = 9378.673211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.122 4.122 6 C 0.120 3.880 7 N -0.743 5.743 8 C 0.570 3.430 9 O -0.577 6.577 10 C -0.283 4.283 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.239 4.239 23 C -0.023 4.023 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 11.394 -7.264 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.160 4.160 6 C -0.004 4.004 7 N -0.396 5.396 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.288 4.288 11 C -0.082 4.082 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.397 5.397 18 Si 0.738 3.262 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.613 11.105 -7.827 13.836 hybrid contribution 0.655 0.087 1.052 1.242 sum -1.959 11.192 -6.776 13.229 Atomic orbital electron populations 1.21965 0.94490 1.02351 1.01567 1.20470 0.95829 0.95298 0.95014 1.21865 1.00978 0.95264 1.01648 1.21967 1.01060 1.00736 0.96628 1.21865 1.01173 0.94956 0.98005 1.21347 0.99098 0.91331 0.88613 1.45937 1.55491 1.12884 1.25296 1.18585 0.78679 0.80392 0.85840 1.90627 1.40378 1.66602 1.48331 1.18930 1.14308 0.96493 0.99063 1.20479 0.96121 0.96954 0.94693 1.20973 1.04897 0.94969 0.98817 1.17781 0.87871 0.91234 0.90536 1.19811 1.06137 1.13238 1.08034 0.89773 1.26088 0.95340 0.93362 0.99878 1.69733 1.08040 1.24806 1.37138 0.86259 0.78489 0.80143 0.81347 1.18679 1.20072 1.18497 1.20730 1.09121 0.98968 0.96997 1.20365 0.95374 0.92721 0.95720 0.92628 0.92797 0.91979 0.92646 0.92705 0.92658 0.91978 0.92796 0.92606 0.91336 0.91304 0.91934 0.91948 0.76884 0.89337 0.86211 0.90217 0.88380 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.12 37.16 0.30 -1.05 16 2 C -0.07 -0.61 0.80 -154.50 -0.12 -0.73 16 3 C -0.14 -1.12 8.47 37.16 0.31 -0.81 16 4 C -0.15 -1.36 8.12 37.16 0.30 -1.06 16 5 C -0.12 -1.31 4.38 -26.72 -0.12 -1.43 16 6 C 0.12 1.71 4.97 -4.04 -0.02 1.69 16 7 N -0.74 -12.71 5.50 -61.31 -0.34 -13.04 16 8 C 0.57 12.42 7.76 -12.43 -0.10 12.32 16 9 O -0.58 -14.07 16.32 5.29 0.09 -13.98 16 10 C -0.28 -6.58 5.89 -104.73 -0.62 -7.20 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 12 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 13 C 0.13 3.31 5.57 -106.80 -0.59 2.71 16 14 C -0.44 -11.10 9.05 -37.75 -0.34 -11.44 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 17 N -0.77 -18.59 10.95 55.56 0.61 -17.98 16 18 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.94 6.43 -51.93 -0.33 0.61 16 36 H 0.06 0.93 6.43 -51.93 -0.33 0.60 16 37 H 0.40 6.03 6.47 -40.82 -0.26 5.77 16 38 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 39 H 0.12 2.97 6.18 -52.48 -0.32 2.65 16 40 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 41 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 42 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -28.21 339.24 -8.55 -36.76 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.44 Total: 9.82 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.55 Total: -18.98 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.27 Total: -31.02 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.21 -8.55 -36.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340072150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.765 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds