Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 C 1.53002 * 109.47461 * 239.99435 * 2 1 3 5 5 C 1.53010 * 109.47216 * 119.99479 * 2 1 3 6 6 C 1.53005 * 109.46802 * 59.99895 * 5 2 1 7 7 N 1.46502 * 109.46802 * 180.02562 * 6 5 2 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47295 * 300.00426 * 1 2 3 25 25 H 1.08996 * 109.46932 * 60.00543 * 1 2 3 26 26 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47508 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46821 * 299.99487 * 3 2 1 29 29 H 1.08996 * 109.47666 * 59.99263 * 3 2 1 30 30 H 1.08997 * 109.47155 * 300.00003 * 4 2 1 31 31 H 1.08996 * 109.47029 * 60.00081 * 4 2 1 32 32 H 1.08998 * 109.46789 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47066 * 300.00235 * 5 2 1 34 34 H 1.08994 * 109.47133 * 180.02562 * 5 2 1 35 35 H 1.09000 * 109.47033 * 60.00319 * 6 5 2 36 36 H 1.09002 * 109.46906 * 300.00307 * 6 5 2 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7212 1.2494 6 6 1.5299 -2.1637 1.2495 7 7 2.0178 -2.8540 2.4460 8 6 1.6925 -4.1445 2.6592 9 8 0.9938 -4.7355 1.8586 10 6 2.1836 -4.8400 3.8652 11 6 2.9830 -4.1555 4.7887 12 6 3.4432 -4.7951 5.9011 13 6 3.1042 -6.1438 6.1263 14 6 3.5729 -6.8084 7.2796 15 1 3.0260 -7.6504 7.6774 16 6 4.7488 -6.3755 7.9090 17 7 5.5819 -5.5964 7.2720 18 14 5.1240 -6.9127 9.6583 19 1 5.2123 -8.3941 9.7130 20 1 6.4170 -6.3240 10.0903 21 1 4.0412 -6.4477 10.5620 22 6 2.2952 -6.8269 5.1968 23 6 1.8448 -6.1807 4.0843 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2076 -2.1392 32 1 3.1300 -0.7217 -1.2488 33 1 1.6766 -0.2073 2.1393 34 1 3.1300 -0.7208 1.2496 35 1 1.8933 -2.6776 0.3595 36 1 0.4399 -2.1636 1.2494 37 1 2.5749 -2.3824 3.0848 38 1 3.2385 -3.1202 4.6177 39 1 4.0632 -4.2674 6.6108 40 1 6.3951 -5.2966 7.7075 41 1 2.0324 -7.8608 5.3655 42 1 1.2250 -6.7036 3.3710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340072150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -67.066003 kcal Electronic energy + Delta-G solvation = -20508.368808 eV Core-core repulsion = 17450.986840 eV Total energy + Delta-G solvation = -3057.381969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83204 -39.22757 -38.58294 -35.66542 -35.44529 -32.22979 -31.30956 -30.10375 -28.15397 -28.13046 -27.59661 -24.55869 -23.28743 -22.68957 -21.33556 -19.58524 -19.35927 -18.29543 -17.35634 -16.93075 -16.49903 -15.75648 -15.67886 -15.38085 -15.32262 -14.94692 -14.60450 -14.58234 -14.27338 -13.87625 -13.65699 -13.31414 -13.22770 -12.88171 -12.84622 -12.66709 -12.61216 -12.53827 -12.37092 -12.22073 -11.79630 -11.61466 -11.48436 -11.42310 -11.35046 -11.12080 -10.68493 -10.02540 -9.57686 -9.39534 -8.78483 -6.48595 0.44062 1.14524 1.39453 1.44833 1.52556 2.12577 2.18479 2.41805 2.79164 3.68728 3.78193 3.89011 3.90403 4.25043 4.29517 4.31359 4.37865 4.44206 4.59415 4.67938 4.79597 4.83380 4.91994 4.94457 5.02516 5.03783 5.05846 5.11130 5.12821 5.15678 5.22320 5.29942 5.38848 5.51425 5.51640 5.58008 5.63323 5.82088 5.94432 5.99136 6.22683 6.53742 6.72303 6.77173 6.88843 7.44746 8.16697 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.003196 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.183385 B = 8757.749402 C = 9378.673211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.147 4.147 5 C -0.114 4.114 6 C 0.119 3.881 7 N -0.726 5.726 8 C 0.569 3.431 9 O -0.609 6.609 10 C -0.294 4.294 11 C -0.054 4.054 12 C -0.197 4.197 13 C 0.102 3.898 14 C -0.475 4.475 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.799 5.799 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.258 1.258 22 C -0.253 4.253 23 C -0.034 4.034 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.407 0.593 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.104 0.896 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 13.173 -6.860 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.204 4.204 5 C -0.152 4.152 6 C -0.004 4.004 7 N -0.378 5.378 8 C 0.362 3.638 9 O -0.493 6.493 10 C -0.299 4.299 11 C -0.073 4.073 12 C -0.216 4.216 13 C 0.099 3.901 14 C -0.502 4.502 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.422 5.422 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.187 1.187 21 H -0.182 1.182 22 C -0.273 4.273 23 C -0.053 4.053 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.880 12.928 -7.440 15.034 hybrid contribution 0.415 -0.431 0.830 1.023 sum -1.465 12.497 -6.610 14.213 Atomic orbital electron populations 1.21965 0.94506 1.01553 1.02354 1.20476 0.95806 0.96080 0.94082 1.21829 1.01184 0.94032 1.02357 1.21968 1.01202 0.99962 0.97287 1.21841 1.01547 0.92460 0.99311 1.21522 0.98809 0.93173 0.86890 1.45826 1.54404 1.11407 1.26138 1.18438 0.78523 0.81726 0.85100 1.90607 1.41868 1.67719 1.49152 1.19211 1.14257 0.96495 0.99920 1.20735 0.94699 0.98450 0.93377 1.21018 1.05889 0.94881 0.99804 1.18136 0.88604 0.92114 0.91266 1.20094 1.07311 1.14037 1.08783 0.89668 1.26922 0.94424 0.93067 1.03697 1.69753 1.08540 1.25104 1.38850 0.85151 0.78648 0.79724 0.75696 1.18349 1.18744 1.18217 1.20870 1.09638 0.99467 0.97300 1.20510 0.95595 0.93521 0.95667 0.92277 0.91643 0.93538 0.92311 0.91790 0.92223 0.93558 0.91623 0.92377 0.90422 0.90573 0.92729 0.92571 0.75578 0.85762 0.86734 0.89163 0.87779 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.12 71.98 0.58 -1.87 16 2 C -0.06 -1.05 0.80 -52.18 -0.04 -1.09 16 3 C -0.14 -1.80 8.47 71.98 0.61 -1.19 16 4 C -0.15 -2.50 8.12 71.98 0.58 -1.91 16 5 C -0.11 -2.19 4.38 30.60 0.13 -2.06 16 6 C 0.12 3.26 4.97 86.38 0.43 3.69 16 7 N -0.73 -23.86 5.50 -466.14 -2.57 -26.42 16 8 C 0.57 24.57 7.76 86.72 0.67 25.25 16 9 O -0.61 -29.89 16.32 -4.00 -0.07 -29.96 16 10 C -0.29 -13.67 5.89 -19.94 -0.12 -13.79 16 11 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 12 C -0.20 -9.74 8.63 22.47 0.19 -9.54 16 13 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 14 C -0.48 -24.07 9.05 23.46 0.21 -23.86 16 15 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 16 C 0.04 1.76 5.15 85.35 0.44 2.20 16 17 N -0.80 -38.12 10.95 21.87 0.24 -37.88 16 18 Si 0.99 34.71 29.59 68.60 2.03 36.74 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 22 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 23 C -0.03 -1.65 9.52 22.25 0.21 -1.44 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.92 6.43 -2.38 -0.02 0.90 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.93 6.43 -2.39 -0.02 0.91 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.61 6.43 -2.39 -0.02 1.60 16 36 H 0.06 1.64 6.43 -2.39 -0.02 1.63 16 37 H 0.41 11.49 6.47 -92.71 -0.60 10.89 16 38 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 39 H 0.11 5.72 6.18 -2.91 -0.02 5.70 16 40 H 0.30 12.60 8.29 -92.70 -0.77 11.83 16 41 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 42 H 0.10 4.85 7.63 -2.91 -0.02 4.82 16 Total: -1.00 -60.93 339.24 4.27 -56.65 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.41 Total: 35.94 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 4.23 Total: -35.07 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -2.33 Total: -64.30 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.07 Total: -29.96 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -60.93 4.27 -56.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340072150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.413 kcal (2) G-P(sol) polarization free energy of solvation -60.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds