Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 C 1.50705 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99886 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47196 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47027 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00541 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99777 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46882 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47394 * 119.99965 * 18 16 14 21 21 H 1.48495 * 109.47005 * 240.00445 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 32 32 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 33 33 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 34 34 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 35 35 H 0.96996 * 120.00278 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47182 * 299.99936 * 12 11 9 37 37 H 1.09001 * 109.47487 * 60.00164 * 12 11 9 38 38 H 1.08992 * 109.47052 * 300.00077 * 13 12 11 39 39 H 1.09001 * 109.46726 * 59.99751 * 13 12 11 40 40 H 0.97000 * 119.99859 * 179.97438 * 17 16 14 41 41 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 42 42 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 6 5.4890 6.8689 -0.0005 10 8 4.7008 7.7907 -0.0004 11 7 6.8141 7.1151 -0.0001 12 6 7.3023 8.4963 -0.0001 13 6 8.8324 8.4964 0.0011 14 6 9.3347 9.9172 0.0005 15 1 8.6329 10.7381 -0.0002 16 6 10.6902 10.1692 0.0018 17 7 11.5449 9.1695 0.0032 18 14 11.3129 11.9304 0.0018 19 1 10.1579 12.8637 -0.0005 20 1 12.1366 12.1643 1.2150 21 1 12.1391 12.1632 -1.2099 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 3.0933 5.9619 -0.8899 32 1 3.0934 5.9618 0.8901 33 1 5.3501 4.9342 0.8901 34 1 5.3500 4.9342 -0.8899 35 1 7.4444 6.3779 0.0010 36 1 6.9393 9.0101 -0.8903 37 1 6.9388 9.0103 0.8897 38 1 9.1950 7.9828 0.8914 39 1 9.1964 7.9823 -0.8885 40 1 12.4985 9.3468 0.0038 41 1 2.9041 3.8846 2.1326 42 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342630103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -53.550607 kcal Electronic energy + Delta-G solvation = -19572.136078 eV Core-core repulsion = 16515.340181 eV Total energy + Delta-G solvation = -3056.795897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87332 -39.09071 -35.41657 -34.77405 -32.86975 -32.56452 -31.09035 -29.94357 -28.69284 -25.55534 -24.26891 -22.90051 -22.65706 -20.98809 -20.58716 -19.86867 -17.00408 -16.34823 -16.07227 -16.06764 -15.21695 -15.19852 -15.07261 -14.46214 -14.08915 -14.01970 -13.73127 -13.42102 -13.31017 -13.23121 -12.51775 -12.46218 -12.31700 -11.96913 -11.64609 -11.60709 -11.19877 -11.16954 -11.04877 -10.98016 -10.87685 -10.62754 -10.33476 -9.79809 -9.46288 -9.18781 -9.08266 -8.63921 -8.54003 -8.34846 -6.09995 -4.12750 1.15090 1.24327 3.03694 3.27956 3.35433 3.40378 3.51549 3.78269 4.41240 4.47715 4.55598 4.76465 4.82771 4.84348 5.02751 5.04629 5.11767 5.21418 5.27081 5.28624 5.35616 5.37581 5.55673 5.63008 5.63568 5.76860 5.80671 5.90440 5.97744 6.14256 6.26586 6.35341 6.35658 6.42738 6.53144 6.74316 6.85239 6.94263 7.51725 7.61452 7.88482 8.03722 8.27648 8.67932 8.93652 9.52177 11.01624 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.053338 B = 0.002230 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.823663 B =12555.525969 C =12749.353631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.065 4.065 8 C -0.135 4.135 9 C 0.503 3.497 10 O -0.553 6.553 11 N -0.724 5.724 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.113 4.113 23 C -0.117 4.117 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.838 -19.178 -0.003 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.103 4.103 8 C -0.175 4.175 9 C 0.289 3.711 10 O -0.432 6.432 11 N -0.374 5.374 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.131 4.131 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.231 0.769 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.201 -18.527 -0.004 26.682 hybrid contribution 0.903 0.544 0.001 1.054 sum -18.298 -17.983 -0.003 25.655 Atomic orbital electron populations 1.21749 0.94808 1.01592 1.02248 1.20532 0.96127 0.92805 1.02741 1.19874 0.99687 0.96229 0.93293 1.21000 1.00136 0.94901 0.97430 1.21082 0.99548 0.94729 0.97774 1.19967 0.98873 0.96188 0.93164 1.20329 0.93574 0.91844 1.04507 1.21652 0.96570 0.94844 1.04441 1.20615 0.82819 0.91133 0.76518 1.90670 1.55452 1.46597 1.50507 1.46363 1.06461 1.10739 1.73794 1.21711 0.97935 0.79787 1.00716 1.19331 0.87238 0.98170 0.97835 1.21100 0.91791 0.91906 1.51170 0.92197 1.25008 0.96929 0.97420 0.95009 1.69968 1.02115 1.30729 1.50500 0.86453 0.78886 0.84599 0.77613 1.19583 1.20929 1.20934 1.21086 0.99523 0.94753 0.97774 1.20999 1.00119 0.94918 0.97431 0.92572 0.92565 0.92493 0.91142 0.91142 0.86302 0.85982 0.90204 0.90206 0.89045 0.89052 0.76884 0.92629 0.92639 0.95944 0.95947 0.92904 0.85980 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.51 16 2 C -0.08 -0.56 6.06 -27.89 -0.17 -0.72 16 3 C -0.09 -0.79 5.13 -104.63 -0.54 -1.33 16 4 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 6 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 7 C -0.06 -0.75 4.63 -27.88 -0.13 -0.88 16 8 C -0.13 -1.59 5.68 -27.88 -0.16 -1.75 16 9 C 0.50 8.36 7.83 -10.98 -0.09 8.27 16 10 O -0.55 -11.29 15.98 5.55 0.09 -11.20 16 11 N -0.72 -12.60 5.56 -60.29 -0.33 -12.93 16 12 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.11 -1.11 9.70 -39.58 -0.38 -1.49 16 23 C -0.12 -1.05 9.70 -39.59 -0.38 -1.43 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 32 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 5.96 8.47 -40.82 -0.35 5.61 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -31.87 356.42 -9.58 -41.45 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.06 Total: 1.10 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -3.36 Total: -14.75 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.40 Total: -38.39 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.87 -9.58 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342630103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.102 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds