Wall clock time and date at job start Mon Mar 30 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 C 1.50705 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99886 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47196 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47027 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00541 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99777 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46882 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47394 * 119.99965 * 18 16 14 21 21 H 1.48495 * 109.47005 * 240.00445 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 32 32 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 33 33 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 34 34 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 35 35 H 0.96996 * 120.00278 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47182 * 299.99936 * 12 11 9 37 37 H 1.09001 * 109.47487 * 60.00164 * 12 11 9 38 38 H 1.08992 * 109.47052 * 300.00077 * 13 12 11 39 39 H 1.09001 * 109.46726 * 59.99751 * 13 12 11 40 40 H 0.97000 * 119.99859 * 179.97438 * 17 16 14 41 41 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 42 42 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 6 5.4890 6.8689 -0.0005 10 8 4.7008 7.7907 -0.0004 11 7 6.8141 7.1151 -0.0001 12 6 7.3023 8.4963 -0.0001 13 6 8.8324 8.4964 0.0011 14 6 9.3347 9.9172 0.0005 15 1 8.6329 10.7381 -0.0002 16 6 10.6902 10.1692 0.0018 17 7 11.5449 9.1695 0.0032 18 14 11.3129 11.9304 0.0018 19 1 10.1579 12.8637 -0.0005 20 1 12.1366 12.1643 1.2150 21 1 12.1391 12.1632 -1.2099 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 3.0933 5.9619 -0.8899 32 1 3.0934 5.9618 0.8901 33 1 5.3501 4.9342 0.8901 34 1 5.3500 4.9342 -0.8899 35 1 7.4444 6.3779 0.0010 36 1 6.9393 9.0101 -0.8903 37 1 6.9388 9.0103 0.8897 38 1 9.1950 7.9828 0.8914 39 1 9.1964 7.9823 -0.8885 40 1 12.4985 9.3468 0.0038 41 1 2.9041 3.8846 2.1326 42 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342630103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:29 Heat of formation + Delta-G solvation = -70.963939 kcal Electronic energy + Delta-G solvation = -19572.891177 eV Core-core repulsion = 16515.340181 eV Total energy + Delta-G solvation = -3057.550996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87117 -40.20504 -36.70046 -35.96079 -34.81453 -33.42637 -31.77284 -31.63037 -29.66792 -27.03614 -25.55081 -23.58648 -23.52782 -22.74107 -21.47676 -21.08101 -18.62873 -18.03219 -17.00068 -16.89314 -16.61994 -16.43323 -16.33800 -15.91109 -15.28842 -14.83924 -14.55095 -14.43370 -14.30210 -14.23398 -14.00106 -13.75161 -13.24726 -13.21758 -12.95259 -12.69904 -12.51673 -12.35572 -12.30812 -12.22418 -11.86192 -11.67852 -11.63220 -11.59103 -11.45254 -10.82318 -10.61993 -10.00224 -9.77832 -9.37042 -8.25355 -6.35851 0.43758 0.54698 1.40216 1.41182 1.54362 1.68693 2.28469 2.46318 2.88026 3.09265 3.70505 3.91073 3.94145 4.08918 4.14703 4.20162 4.31134 4.38443 4.48683 4.52632 4.54586 4.64166 4.68306 4.68939 4.75411 4.84973 4.96406 5.09339 5.11268 5.12383 5.24769 5.27873 5.31696 5.40845 5.50216 5.57297 5.57306 5.77342 5.78160 5.78384 6.15447 6.16992 6.65442 6.77705 7.31226 7.33597 8.86611 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.053338 B = 0.002230 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.823663 B =12555.525969 C =12749.353631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.094 4.094 7 C -0.058 4.058 8 C -0.121 4.121 9 C 0.503 3.497 10 O -0.593 6.593 11 N -0.720 5.720 12 C 0.139 3.861 13 C 0.022 3.978 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.123 4.123 23 C -0.124 4.124 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.411 0.589 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.129 0.871 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 -20.323 -0.003 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.161 4.161 9 C 0.292 3.708 10 O -0.474 6.474 11 N -0.371 5.371 12 C 0.015 3.985 13 C -0.016 4.016 14 C -0.586 4.586 15 H 0.076 0.924 16 C -0.193 4.193 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.247 0.753 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.624 -19.705 -0.003 27.810 hybrid contribution 0.989 0.833 0.001 1.293 sum -18.635 -18.872 -0.002 26.522 Atomic orbital electron populations 1.21736 0.94386 1.02325 1.01798 1.20579 0.96401 0.91565 1.03577 1.20191 0.98854 0.97235 0.93094 1.21247 0.99822 0.94708 0.98394 1.21244 0.99701 0.95265 0.97855 1.19866 1.00171 0.95499 0.93847 1.20210 0.93285 0.92656 1.03437 1.21643 0.96664 0.91300 1.06465 1.21443 0.81794 0.92798 0.74807 1.90654 1.56268 1.48401 1.52117 1.46210 1.07404 1.09442 1.74041 1.21201 0.95567 0.82064 0.99632 1.19143 0.89361 0.96675 0.96380 1.21508 0.92368 0.93213 1.51474 0.92397 1.25885 0.97119 1.01837 0.94415 1.70065 1.02567 1.32896 1.51041 0.85383 0.78339 0.79308 0.77934 1.19036 1.20162 1.20172 1.21248 0.99677 0.95287 0.97855 1.21245 0.99805 0.94725 0.98395 0.93028 0.93017 0.91197 0.90327 0.90327 0.84707 0.85343 0.91327 0.91329 0.86866 0.86875 0.75289 0.93735 0.93747 0.97267 0.97272 0.92520 0.85340 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.08 -0.91 6.06 29.85 0.18 -0.73 16 3 C -0.09 -1.45 5.13 -19.87 -0.10 -1.55 16 4 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 5 C -0.12 -2.25 9.70 22.27 0.22 -2.03 16 6 C -0.09 -1.86 5.13 -19.86 -0.10 -1.96 16 7 C -0.06 -1.31 4.63 29.85 0.14 -1.17 16 8 C -0.12 -2.67 5.68 29.85 0.17 -2.50 16 9 C 0.50 16.46 7.83 87.66 0.69 17.14 16 10 O -0.59 -24.40 15.98 -3.04 -0.05 -24.45 16 11 N -0.72 -24.82 5.56 -463.05 -2.57 -27.39 16 12 C 0.14 6.07 5.61 86.38 0.48 6.55 16 13 C 0.02 1.11 5.09 29.85 0.15 1.26 16 14 C -0.55 -30.85 9.11 25.60 0.23 -30.61 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.01 0.35 5.46 84.65 0.46 0.81 16 17 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 18 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.12 -2.25 9.70 22.27 0.22 -2.03 16 23 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 28 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 29 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 32 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.41 11.96 8.47 -92.71 -0.79 11.18 16 36 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -67.97 356.42 3.77 -64.20 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.20 Total: 17.06 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 3.88 Total: -21.15 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.29 Total: -81.52 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.97 3.77 -64.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342630103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.761 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds