Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47079 * 2 1 4 4 C 1.38233 * 120.00288 * 89.99753 * 3 2 1 5 5 C 1.38234 * 120.00158 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00241 * 359.96287 * 5 4 3 7 7 C 1.50690 * 120.00119 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47656 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47278 * 119.99925 * 7 6 5 10 10 C 1.50706 * 109.47185 * 239.99639 * 7 6 5 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 7 6 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 7 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 C 1.50696 * 109.46969 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00408 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47112 * 89.99781 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00049 * 19 17 15 22 22 H 1.48494 * 109.47201 * 330.00023 * 19 17 15 23 23 C 1.38241 * 119.99588 * 0.27018 * 6 5 4 24 24 C 1.38236 * 119.99829 * 270.01933 * 3 2 1 25 25 H 1.09002 * 109.46988 * 60.00405 * 1 2 3 26 26 H 1.09000 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47525 * 300.00239 * 1 2 3 28 28 H 1.08995 * 109.47525 * 239.99761 * 2 1 3 29 29 H 1.09002 * 109.46988 * 119.99595 * 2 1 3 30 30 H 1.08002 * 119.99528 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99731 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46837 * 299.99824 * 9 7 6 33 33 H 1.08993 * 109.47257 * 59.99708 * 9 7 6 34 34 H 1.09001 * 109.47281 * 180.02562 * 9 7 6 35 35 H 0.97005 * 120.00161 * 359.72088 * 12 10 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 37 37 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 38 38 H 1.09000 * 109.46986 * 299.99958 * 14 13 12 39 39 H 1.09002 * 109.46857 * 60.00093 * 14 13 12 40 40 H 0.96999 * 119.99905 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99546 * 179.73703 * 23 6 5 42 42 H 1.07996 * 120.00261 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9536 4.0276 -0.0001 7 6 3.4559 5.4483 -0.0001 8 1 3.5764 5.7912 1.0275 9 6 4.8039 5.5127 -0.7210 10 6 2.4634 6.3320 -0.7109 11 8 1.4484 5.8549 -1.1724 12 7 2.7043 7.6523 -0.8345 13 6 1.7392 8.5114 -1.5251 14 6 2.2462 9.9550 -1.5197 15 6 1.2537 10.8385 -2.2305 16 1 0.3514 10.4132 -2.6443 17 6 1.4977 12.1901 -2.3525 18 7 2.5966 12.7080 -1.8490 19 14 0.2671 13.2855 -3.2330 20 1 -0.7220 13.8048 -2.2547 21 1 0.9814 14.4231 -3.8661 22 1 -0.4363 12.4994 -4.2782 23 6 2.7186 3.3774 -1.1972 24 6 2.2623 2.0726 -1.1972 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0830 1.5632 2.1324 31 1 2.9025 3.8852 2.1324 32 1 5.5217 4.8735 -0.2069 33 1 4.6831 5.1700 -1.7486 34 1 5.1674 6.5403 -0.7206 35 1 3.5145 8.0344 -0.4625 36 1 1.6213 8.1715 -2.5540 37 1 0.7778 8.4620 -1.0138 38 1 2.3640 10.2948 -0.4907 39 1 3.2075 10.0043 -2.0310 40 1 2.7684 13.6588 -1.9352 41 1 2.8948 3.8879 -2.1325 42 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342638724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -46.462696 kcal Electronic energy + Delta-G solvation = -20361.455072 eV Core-core repulsion = 17304.966530 eV Total energy + Delta-G solvation = -3056.488542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.15777 -38.74079 -35.25227 -34.71117 -33.04979 -32.46852 -30.90196 -29.62963 -28.45123 -25.29675 -24.55274 -22.98883 -22.71918 -21.14347 -20.66906 -19.56682 -16.84648 -16.56346 -16.26350 -15.56398 -15.37662 -14.84505 -14.64319 -14.45311 -13.99029 -13.79510 -13.56641 -13.27584 -13.16654 -13.12092 -12.72764 -12.31036 -12.26476 -11.87692 -11.67623 -11.52247 -11.24813 -11.20406 -11.03420 -10.83427 -10.81267 -10.63777 -10.32141 -9.75973 -9.43542 -9.16641 -8.82957 -8.53389 -8.48833 -8.34418 -6.10118 -4.12852 1.33535 1.47630 3.03294 3.28988 3.35033 3.39057 3.58556 3.94018 4.41618 4.53602 4.69330 4.74026 4.90457 5.01088 5.11827 5.18423 5.19641 5.26978 5.29857 5.38828 5.48040 5.52799 5.63913 5.70325 5.75201 5.83060 5.98494 6.03941 6.07905 6.12604 6.35034 6.35309 6.44697 6.61544 6.67570 6.74116 6.93879 7.03893 7.51319 7.61204 7.88273 8.03576 8.27627 8.68189 8.93241 9.51999 11.01497 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002925 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.100793 B = 9571.406451 C =10061.133635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.065 4.065 7 C -0.075 4.075 8 H 0.101 0.899 9 C -0.140 4.140 10 C 0.509 3.491 11 O -0.542 6.542 12 N -0.722 5.722 13 C 0.122 3.878 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.079 4.079 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -22.222 5.912 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.141 4.141 5 C -0.129 4.129 6 C -0.066 4.066 7 C -0.096 4.096 8 H 0.119 0.881 9 C -0.198 4.198 10 C 0.294 3.706 11 O -0.419 6.419 12 N -0.372 5.372 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.097 4.097 24 C -0.139 4.139 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.332 -22.372 5.575 23.296 hybrid contribution -0.269 1.061 -0.229 1.118 sum 3.063 -21.311 5.346 22.184 Atomic orbital electron populations 1.21753 0.94793 1.01440 1.02489 1.20516 0.96179 0.92831 1.02491 1.19847 0.99400 0.96176 0.93295 1.20883 1.00954 0.94914 0.97320 1.20973 0.99770 0.94920 0.97197 1.19325 0.99760 0.93941 0.93537 1.20331 0.95552 0.92209 1.01520 0.88068 1.21788 0.94345 1.02836 1.00786 1.20387 0.87095 0.82875 0.80286 1.90691 1.28008 1.74352 1.48864 1.46324 1.25261 1.07580 1.58011 1.21708 0.91143 0.91711 0.95448 1.19318 0.97244 0.88017 0.97880 1.21057 1.05981 0.92603 1.36383 0.92281 1.24997 0.95533 0.98167 0.95598 1.69951 1.25090 1.12780 1.45499 0.86513 0.81104 0.80076 0.79879 1.20551 1.21154 1.19729 1.20905 0.97150 0.93898 0.97718 1.20956 1.00581 0.94940 0.97374 0.92424 0.92595 0.92535 0.91240 0.91293 0.86410 0.86239 0.91482 0.91884 0.91411 0.76947 0.92644 0.92673 0.95981 0.95943 0.92845 0.86277 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 5 C -0.11 -1.31 9.67 -39.58 -0.38 -1.69 16 6 C -0.07 -0.86 4.40 -104.63 -0.46 -1.32 16 7 C -0.07 -0.94 2.90 -92.92 -0.27 -1.21 16 8 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 9 C -0.14 -1.46 8.90 37.16 0.33 -1.13 16 10 C 0.51 8.64 7.02 -10.98 -0.08 8.56 16 11 O -0.54 -11.27 15.09 5.56 0.08 -11.19 16 12 N -0.72 -12.55 5.45 -60.29 -0.33 -12.88 16 13 C 0.12 2.62 5.61 -4.04 -0.02 2.59 16 14 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 15 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 19 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.08 -1.07 7.92 -39.58 -0.31 -1.38 16 24 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.17 7.95 -52.49 -0.42 0.75 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.69 7.40 -51.93 -0.38 0.31 16 34 H 0.07 0.66 7.57 -51.93 -0.39 0.26 16 35 H 0.40 5.93 7.90 -40.82 -0.32 5.61 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.12 1.66 7.52 -52.49 -0.39 1.27 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -32.00 350.95 -9.02 -41.02 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.93 Total: 2.20 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.85 Total: -15.47 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.41 Total: -38.26 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.00 -9.02 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342638724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.443 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds