Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47079 * 2 1 4 4 C 1.38233 * 120.00288 * 89.99753 * 3 2 1 5 5 C 1.38234 * 120.00158 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00241 * 359.96287 * 5 4 3 7 7 C 1.50690 * 120.00119 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47656 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47278 * 119.99925 * 7 6 5 10 10 C 1.50706 * 109.47185 * 239.99639 * 7 6 5 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 7 6 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 7 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 C 1.50696 * 109.46969 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00408 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47112 * 89.99781 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00049 * 19 17 15 22 22 H 1.48494 * 109.47201 * 330.00023 * 19 17 15 23 23 C 1.38241 * 119.99588 * 0.27018 * 6 5 4 24 24 C 1.38236 * 119.99829 * 270.01933 * 3 2 1 25 25 H 1.09002 * 109.46988 * 60.00405 * 1 2 3 26 26 H 1.09000 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47525 * 300.00239 * 1 2 3 28 28 H 1.08995 * 109.47525 * 239.99761 * 2 1 3 29 29 H 1.09002 * 109.46988 * 119.99595 * 2 1 3 30 30 H 1.08002 * 119.99528 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99731 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46837 * 299.99824 * 9 7 6 33 33 H 1.08993 * 109.47257 * 59.99708 * 9 7 6 34 34 H 1.09001 * 109.47281 * 180.02562 * 9 7 6 35 35 H 0.97005 * 120.00161 * 359.72088 * 12 10 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 37 37 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 38 38 H 1.09000 * 109.46986 * 299.99958 * 14 13 12 39 39 H 1.09002 * 109.46857 * 60.00093 * 14 13 12 40 40 H 0.96999 * 119.99905 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99546 * 179.73703 * 23 6 5 42 42 H 1.07996 * 120.00261 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9536 4.0276 -0.0001 7 6 3.4559 5.4483 -0.0001 8 1 3.5764 5.7912 1.0275 9 6 4.8039 5.5127 -0.7210 10 6 2.4634 6.3320 -0.7109 11 8 1.4484 5.8549 -1.1724 12 7 2.7043 7.6523 -0.8345 13 6 1.7392 8.5114 -1.5251 14 6 2.2462 9.9550 -1.5197 15 6 1.2537 10.8385 -2.2305 16 1 0.3514 10.4132 -2.6443 17 6 1.4977 12.1901 -2.3525 18 7 2.5966 12.7080 -1.8490 19 14 0.2671 13.2855 -3.2330 20 1 -0.7220 13.8048 -2.2547 21 1 0.9814 14.4231 -3.8661 22 1 -0.4363 12.4994 -4.2782 23 6 2.7186 3.3774 -1.1972 24 6 2.2623 2.0726 -1.1972 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0830 1.5632 2.1324 31 1 2.9025 3.8852 2.1324 32 1 5.5217 4.8735 -0.2069 33 1 4.6831 5.1700 -1.7486 34 1 5.1674 6.5403 -0.7206 35 1 3.5145 8.0344 -0.4625 36 1 1.6213 8.1715 -2.5540 37 1 0.7778 8.4620 -1.0138 38 1 2.3640 10.2948 -0.4907 39 1 3.2075 10.0043 -2.0310 40 1 2.7684 13.6588 -1.9352 41 1 2.8948 3.8879 -2.1325 42 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342638724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -64.412237 kcal Electronic energy + Delta-G solvation = -20362.233422 eV Core-core repulsion = 17304.966530 eV Total energy + Delta-G solvation = -3057.266893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31070 -39.87741 -36.67309 -35.96141 -34.85813 -33.54696 -31.79796 -31.40299 -29.36399 -26.97007 -25.68624 -24.06988 -23.64384 -22.82474 -21.78758 -20.79042 -18.58423 -17.99721 -17.48770 -16.70066 -16.54322 -16.40982 -16.16575 -15.74655 -15.06954 -14.82830 -14.59328 -14.53049 -14.33195 -14.11028 -13.99333 -13.69881 -13.24169 -13.22311 -12.95888 -12.73804 -12.55876 -12.52369 -12.31461 -12.24304 -12.00541 -11.69366 -11.64330 -11.59894 -11.46168 -10.70747 -10.61559 -10.00872 -9.74707 -9.39450 -8.25418 -6.35841 0.42463 0.56587 1.40740 1.41061 1.52607 1.67315 2.26127 2.44654 2.92556 3.09224 3.58773 3.79689 3.95551 4.01333 4.13900 4.20217 4.28480 4.41277 4.48046 4.50619 4.53073 4.60072 4.69863 4.73706 4.83259 4.84715 4.92001 5.06439 5.08145 5.17372 5.21876 5.25949 5.30607 5.39041 5.48835 5.55306 5.57194 5.73938 5.76146 5.77893 6.15257 6.16186 6.64762 6.77245 7.30182 7.33443 8.86364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002925 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.100793 B = 9571.406451 C =10061.133635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.063 4.063 8 H 0.127 0.873 9 C -0.136 4.136 10 C 0.508 3.492 11 O -0.583 6.583 12 N -0.716 5.716 13 C 0.142 3.858 14 C 0.024 3.976 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.100 4.100 24 C -0.134 4.134 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.103 0.897 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -23.293 6.919 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.085 4.085 7 C -0.084 4.084 8 H 0.145 0.855 9 C -0.194 4.194 10 C 0.295 3.705 11 O -0.463 6.463 12 N -0.367 5.367 13 C 0.018 3.982 14 C -0.013 4.013 15 C -0.587 4.587 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.118 4.118 24 C -0.152 4.152 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.247 0.753 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.482 -23.453 6.596 24.611 hybrid contribution -0.308 1.327 -0.528 1.461 sum 3.174 -22.127 6.069 23.162 Atomic orbital electron populations 1.21747 0.94735 1.02368 1.01549 1.20570 0.96086 0.91324 1.03813 1.20199 0.98464 0.97436 0.92896 1.21249 1.00061 0.94797 0.98349 1.21279 0.99259 0.95455 0.97456 1.19469 1.00850 0.94223 0.93991 1.20337 0.94851 0.90955 1.02306 0.85471 1.21799 0.93556 1.03844 1.00187 1.21211 0.87259 0.82569 0.79443 1.90670 1.30082 1.74961 1.50556 1.46141 1.25071 1.07691 1.57833 1.21186 0.91371 0.90546 0.95112 1.19121 0.96156 0.89632 0.96440 1.21466 1.06593 0.93645 1.36964 0.92525 1.25859 0.97405 0.99596 0.96238 1.70048 1.26664 1.13355 1.46417 0.85457 0.78754 0.78109 0.78814 1.19739 1.20377 1.19186 1.20950 0.98567 0.94793 0.97524 1.21168 1.00747 0.94687 0.98575 0.93818 0.90760 0.93020 0.90376 0.89545 0.83925 0.84114 0.89207 0.93022 0.90601 0.75335 0.93866 0.93920 0.97258 0.97196 0.92491 0.87874 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.89 71.98 0.71 -1.46 16 2 C -0.08 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.85 5.13 -19.87 -0.10 -1.95 16 4 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 5 C -0.12 -2.53 9.67 22.27 0.22 -2.32 16 6 C -0.08 -2.18 4.40 -19.87 -0.09 -2.26 16 7 C -0.06 -1.52 2.90 -12.29 -0.04 -1.56 16 8 H 0.13 2.39 7.88 -2.39 -0.02 2.37 16 9 C -0.14 -2.66 8.90 71.98 0.64 -2.02 16 10 C 0.51 17.25 7.02 87.66 0.62 17.86 16 11 O -0.58 -24.81 15.09 -3.03 -0.05 -24.85 16 12 N -0.72 -24.96 5.45 -463.05 -2.52 -27.48 16 13 C 0.14 6.21 5.61 86.38 0.48 6.69 16 14 C 0.02 1.21 5.09 29.85 0.15 1.37 16 15 C -0.55 -30.93 9.11 25.60 0.23 -30.69 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.01 0.44 5.46 84.66 0.46 0.91 16 18 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 19 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C -0.10 -2.76 7.92 22.27 0.18 -2.59 16 24 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 25 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.01 8.09 -2.39 -0.02 1.00 16 29 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.14 2.35 7.95 -2.91 -0.02 2.33 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.12 7.40 -2.39 -0.02 1.10 16 34 H 0.08 1.34 7.57 -2.39 -0.02 1.33 16 35 H 0.41 12.04 7.90 -92.70 -0.73 11.31 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.10 3.05 7.52 -2.91 -0.02 3.03 16 42 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -69.19 350.95 4.08 -65.11 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.25 Total: 19.66 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.08 Total: -24.31 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.24 Total: -81.46 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.19 4.08 -65.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342638724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.697 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds