Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46871 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99602 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00609 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46858 * 89.99836 * 18 16 14 20 20 H 1.48495 * 109.47295 * 209.99759 * 18 16 14 21 21 H 1.48504 * 109.46745 * 330.00170 * 18 16 14 22 22 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 23 23 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 24 24 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 25 25 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 27 27 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 28 28 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 30 30 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 31 31 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 34 34 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 35 35 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 36 36 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 37 37 H 0.96998 * 119.99578 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47710 * 300.00483 * 13 12 10 39 39 H 1.09000 * 109.46883 * 60.00527 * 13 12 10 40 40 H 0.96998 * 120.00225 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.99934 * 179.72684 * 22 7 6 42 42 H 1.07999 * 120.00005 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 6 5.3030 -2.8442 6.3665 11 8 4.6472 -3.7368 6.8607 12 7 6.4806 -2.4886 6.9175 13 6 6.9675 -3.1791 8.1142 14 6 8.2949 -2.5960 8.5255 15 1 8.7318 -1.7912 7.9529 16 6 8.9514 -3.0899 9.6327 17 7 8.4197 -4.0702 10.3297 18 14 10.5972 -2.3675 10.1421 19 1 10.3733 -1.2423 11.0850 20 1 11.4132 -3.4152 10.8067 21 1 11.3131 -1.8708 8.9396 22 6 2.1532 -0.8940 3.6146 23 6 1.6980 -0.2384 2.4860 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.0878 -2.2035 0.1226 32 1 3.9082 -3.3645 2.1330 33 1 2.7358 -2.6006 5.5283 34 1 3.5755 -3.7868 4.5005 35 1 5.5203 -2.2585 4.3257 36 1 4.6807 -1.0723 5.3534 37 1 7.0052 -1.7750 6.5220 38 1 6.2491 -3.0530 8.9242 39 1 7.0881 -4.2405 7.8975 40 1 8.8814 -4.4174 11.1089 41 1 1.8881 -0.5282 4.5956 42 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344214926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = -51.634026 kcal Electronic energy + Delta-G solvation = -19876.574846 eV Core-core repulsion = 16819.862058 eV Total energy + Delta-G solvation = -3056.712788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87398 -38.75240 -36.10550 -34.19853 -32.97978 -32.28267 -31.00812 -29.23824 -27.44650 -27.18383 -24.69619 -23.00194 -22.47156 -21.47642 -20.02731 -19.54065 -17.15383 -16.51203 -15.89571 -15.56665 -15.14314 -14.96860 -14.90199 -14.25882 -14.12239 -13.84236 -13.82064 -13.45665 -12.95860 -12.90432 -12.69320 -12.46733 -12.00121 -11.85621 -11.74492 -11.65247 -11.44900 -11.32682 -10.97700 -10.95389 -10.86980 -10.77039 -10.68269 -10.30986 -9.39037 -9.07298 -8.98424 -8.72898 -8.52168 -7.86166 -6.16173 -4.23072 1.25623 1.33893 3.24346 3.30394 3.32935 3.41375 3.64291 4.14041 4.37464 4.42958 4.52855 4.87351 4.89912 4.93729 4.95796 5.15016 5.19719 5.26516 5.27193 5.30874 5.37518 5.44874 5.51663 5.59376 5.61783 5.67312 5.89999 5.90322 5.90841 5.92495 5.98797 6.11254 6.31764 6.37890 6.52400 6.65682 6.94938 7.32113 7.46309 7.52932 7.67675 7.97990 8.65107 8.79030 9.13049 9.43709 10.94037 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038341 B = 0.002523 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.119332 B =11095.558205 C =11467.014473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.065 4.065 9 C -0.134 4.134 10 C 0.496 3.504 11 O -0.559 6.559 12 N -0.714 5.714 13 C 0.249 3.751 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.114 4.114 23 C -0.114 4.114 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.391 0.609 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.122 0.878 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 9.549 -20.960 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.087 4.087 5 C -0.135 4.135 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.103 4.103 9 C -0.174 4.174 10 C 0.281 3.719 11 O -0.438 6.438 12 N -0.362 5.362 13 C 0.128 3.872 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.132 4.132 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.223 0.777 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.568 8.774 -20.409 26.031 hybrid contribution 1.242 0.675 0.221 1.431 sum -12.326 9.449 -20.188 25.471 Atomic orbital electron populations 1.21858 0.94453 1.01992 1.01819 1.20110 0.95863 0.96026 0.95470 1.21859 1.01318 0.95147 1.01819 1.19807 0.98297 0.95997 0.94551 1.21019 0.98365 0.95691 0.98436 1.21086 1.00076 1.00122 0.91930 1.20012 0.97145 0.95731 0.94972 1.20336 0.95952 0.99593 0.94411 1.21642 0.97771 1.01011 0.97019 1.20526 0.81918 0.84045 0.85405 1.90654 1.57220 1.31835 1.64141 1.46489 1.20453 1.38293 1.30995 1.19096 0.94035 0.92809 0.81278 1.21237 1.04567 1.19852 1.12487 0.91911 1.24964 0.98281 0.94841 0.96002 1.69974 1.38905 1.25501 1.17928 0.86412 0.82972 0.78742 0.78765 1.20457 1.21000 1.19751 1.21088 0.98009 0.95501 0.98637 1.20920 1.00421 0.99890 0.91933 0.92532 0.92554 0.92443 0.90660 0.92486 0.92537 0.92431 0.86387 0.86000 0.90242 0.90241 0.89437 0.89446 0.77702 0.95601 0.95581 0.92454 0.86019 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.01 37.16 0.33 -0.62 16 2 C -0.06 -0.41 3.09 -91.78 -0.28 -0.70 16 3 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 4 C -0.09 -0.82 4.78 -104.63 -0.50 -1.32 16 5 C -0.12 -1.15 9.67 -39.58 -0.38 -1.54 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 7 C -0.08 -0.93 5.13 -104.62 -0.54 -1.46 16 8 C -0.07 -0.88 4.64 -27.88 -0.13 -1.01 16 9 C -0.13 -1.89 5.68 -27.89 -0.16 -2.05 16 10 C 0.50 9.89 7.83 -10.98 -0.09 9.80 16 11 O -0.56 -13.45 15.98 5.56 0.09 -13.36 16 12 N -0.71 -15.20 5.55 -61.47 -0.34 -15.54 16 13 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 14 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 23 C -0.11 -1.11 8.71 -39.58 -0.34 -1.46 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 27 H 0.07 0.51 7.88 -51.93 -0.41 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 31 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 34 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 42 H 0.12 0.96 7.10 -52.49 -0.37 0.59 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -32.09 352.06 -9.10 -41.19 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.90 Total: 3.15 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.97 Total: -11.14 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.40 Total: -41.09 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.09 -9.10 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344214926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.446 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds