Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46871 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99602 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00609 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46858 * 89.99836 * 18 16 14 20 20 H 1.48495 * 109.47295 * 209.99759 * 18 16 14 21 21 H 1.48504 * 109.46745 * 330.00170 * 18 16 14 22 22 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 23 23 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 24 24 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 25 25 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 27 27 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 28 28 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 30 30 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 31 31 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 34 34 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 35 35 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 36 36 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 37 37 H 0.96998 * 119.99578 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47710 * 300.00483 * 13 12 10 39 39 H 1.09000 * 109.46883 * 60.00527 * 13 12 10 40 40 H 0.96998 * 120.00225 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.99934 * 179.72684 * 22 7 6 42 42 H 1.07999 * 120.00005 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 6 5.3030 -2.8442 6.3665 11 8 4.6472 -3.7368 6.8607 12 7 6.4806 -2.4886 6.9175 13 6 6.9675 -3.1791 8.1142 14 6 8.2949 -2.5960 8.5255 15 1 8.7318 -1.7912 7.9529 16 6 8.9514 -3.0899 9.6327 17 7 8.4197 -4.0702 10.3297 18 14 10.5972 -2.3675 10.1421 19 1 10.3733 -1.2423 11.0850 20 1 11.4132 -3.4152 10.8067 21 1 11.3131 -1.8708 8.9396 22 6 2.1532 -0.8940 3.6146 23 6 1.6980 -0.2384 2.4860 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.0878 -2.2035 0.1226 32 1 3.9082 -3.3645 2.1330 33 1 2.7358 -2.6006 5.5283 34 1 3.5755 -3.7868 4.5005 35 1 5.5203 -2.2585 4.3257 36 1 4.6807 -1.0723 5.3534 37 1 7.0052 -1.7750 6.5220 38 1 6.2491 -3.0530 8.9242 39 1 7.0881 -4.2405 7.8975 40 1 8.8814 -4.4174 11.1089 41 1 1.8881 -0.5282 4.5956 42 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344214926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = -70.163405 kcal Electronic energy + Delta-G solvation = -19877.378340 eV Core-core repulsion = 16819.862058 eV Total energy + Delta-G solvation = -3057.516282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83626 -40.25514 -36.88553 -36.13569 -34.37939 -33.94552 -31.78316 -30.42256 -28.96592 -27.94029 -25.96853 -24.33003 -23.66644 -22.48610 -21.26732 -20.70478 -18.94865 -17.67949 -17.15887 -17.01631 -16.74251 -16.14538 -16.05371 -15.81506 -14.94709 -14.74659 -14.52535 -14.48051 -14.32428 -14.08917 -14.01226 -13.60209 -13.51513 -13.09253 -12.94100 -12.72591 -12.63648 -12.55197 -12.27852 -12.23206 -11.93983 -11.85693 -11.51560 -11.48318 -11.43663 -10.81254 -10.77566 -9.83152 -9.76586 -9.36294 -8.30013 -6.46860 0.45008 0.55628 1.42504 1.45074 1.56368 1.77670 2.32221 2.59565 2.90443 3.04616 3.73456 3.85431 3.90223 4.08559 4.08991 4.20682 4.34418 4.36363 4.39174 4.58828 4.62593 4.66412 4.69591 4.84454 4.95123 5.01474 5.03155 5.08699 5.11833 5.19303 5.22998 5.25535 5.28167 5.38843 5.42469 5.48697 5.59978 5.69367 5.79027 5.80838 5.84287 6.17150 6.64419 6.91017 7.22588 7.50016 8.82199 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038341 B = 0.002523 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.119332 B =11095.558205 C =11467.014473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.092 4.092 8 C -0.058 4.058 9 C -0.116 4.116 10 C 0.493 3.507 11 O -0.605 6.605 12 N -0.710 5.710 13 C 0.264 3.736 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.255 1.255 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.409 0.591 38 H -0.014 1.014 39 H -0.013 1.013 40 H 0.269 0.731 41 H 0.127 0.873 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 11.879 -23.056 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.092 4.092 8 C -0.096 4.096 9 C -0.156 4.156 10 C 0.281 3.719 11 O -0.487 6.487 12 N -0.360 5.360 13 C 0.141 3.859 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.179 1.179 22 C -0.141 4.141 23 C -0.135 4.135 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.245 0.755 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.907 11.142 -22.551 28.272 hybrid contribution 0.931 -0.073 0.815 1.239 sum -11.976 11.069 -21.736 27.174 Atomic orbital electron populations 1.21851 0.93854 1.01815 1.02488 1.20163 0.96305 0.96266 0.94692 1.21848 1.00934 0.94743 1.02475 1.20123 0.97443 0.95700 0.95309 1.21274 0.98176 0.95730 0.98917 1.21226 1.00365 1.00480 0.91990 1.19832 0.98557 0.96448 0.94334 1.20204 0.95326 0.99087 0.95022 1.21611 0.98374 1.01380 0.94228 1.21597 0.80679 0.83296 0.86341 1.90632 1.58310 1.34025 1.65778 1.46256 1.21398 1.38588 1.29709 1.18542 0.93668 0.91359 0.82281 1.21628 1.04549 1.20306 1.12940 0.89802 1.26099 1.02766 0.95015 0.95886 1.70139 1.41024 1.27206 1.18610 0.85139 0.77316 0.77813 0.78839 1.19550 1.20935 1.17896 1.21227 0.97997 0.95424 0.99457 1.21131 1.00371 1.00284 0.91734 0.91205 0.93156 0.92491 0.89927 0.93063 0.91246 0.92476 0.84596 0.85490 0.91622 0.91624 0.86874 0.86880 0.75549 0.99568 0.99549 0.92237 0.85519 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 71.98 0.65 -0.91 16 2 C -0.06 -0.68 3.09 -11.54 -0.04 -0.72 16 3 C -0.14 -1.56 9.01 71.98 0.65 -0.91 16 4 C -0.09 -1.43 4.78 -19.87 -0.09 -1.53 16 5 C -0.12 -2.18 9.67 22.27 0.22 -1.97 16 6 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 7 C -0.09 -2.07 5.13 -19.86 -0.10 -2.17 16 8 C -0.06 -1.57 4.64 29.85 0.14 -1.43 16 9 C -0.12 -3.13 5.68 29.85 0.17 -2.96 16 10 C 0.49 19.89 7.83 87.65 0.69 20.57 16 11 O -0.60 -30.39 15.98 -3.03 -0.05 -30.43 16 12 N -0.71 -30.47 5.55 -466.79 -2.59 -33.06 16 13 C 0.26 14.78 5.43 85.63 0.46 15.24 16 14 C -0.56 -30.62 9.28 25.60 0.24 -30.38 16 15 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.10 5.46 84.66 0.46 0.57 16 17 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 18 Si 0.99 42.56 29.54 68.60 2.03 44.59 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 22 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 23 C -0.12 -2.07 8.71 22.27 0.19 -1.88 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.62 7.39 -2.39 -0.02 0.61 16 27 H 0.08 0.90 7.88 -2.39 -0.02 0.88 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.63 7.39 -2.39 -0.02 0.61 16 31 H 0.14 1.85 7.95 -2.91 -0.02 1.83 16 32 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.11 2.54 8.14 -2.39 -0.02 2.53 16 36 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.41 14.40 8.32 -92.71 -0.77 13.63 16 38 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.13 1.88 7.10 -2.91 -0.02 1.85 16 Total: -1.00 -71.72 352.06 3.95 -67.76 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.22 Total: 20.66 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.06 Total: -13.07 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.30 Total: -89.51 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.05 Total: -30.43 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.72 3.95 -67.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344214926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.403 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds