Wall clock time and date at job start Mon Mar 30 2020 02:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 C 1.53007 * 109.46909 * 60.00118 * 3 2 1 5 5 C 1.52998 * 109.47486 * 300.00568 * 3 2 1 6 6 C 1.52992 * 109.47365 * 180.02562 * 3 2 1 7 7 C 1.50696 * 109.47335 * 180.02562 * 6 3 2 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99901 * 180.02562 * 7 6 3 10 10 C 1.39131 * 119.99596 * 185.72517 * 9 7 6 11 11 C 1.38643 * 120.29102 * 19.23887 * 10 9 7 12 12 C 1.38218 * 120.03790 * 180.25521 * 11 10 9 13 13 C 1.38869 * 120.61130 * 359.74772 * 12 11 10 14 14 C 1.36455 * 120.58254 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.94062 * 359.97438 * 14 13 12 16 16 C 1.41070 * 120.29920 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99979 * 206.47457 * 16 15 14 18 18 C 1.39960 * 119.99938 * 26.47839 * 16 15 14 19 19 N 1.30849 * 119.99785 * 201.35869 * 18 16 15 20 20 Si 1.86801 * 120.00227 * 21.35526 * 18 16 15 21 21 H 1.48507 * 109.47026 * 270.00322 * 20 18 16 22 22 H 1.48502 * 109.47080 * 29.99739 * 20 18 16 23 23 H 1.48493 * 109.47157 * 150.00329 * 20 18 16 24 24 H 1.08993 * 109.47457 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46970 * 299.99853 * 1 2 3 26 26 H 1.09004 * 109.47372 * 59.99330 * 1 2 3 27 27 H 1.09004 * 109.46881 * 240.00491 * 2 1 3 28 28 H 1.08997 * 109.47125 * 120.00042 * 2 1 3 29 29 H 1.08993 * 109.47027 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47121 * 300.00474 * 4 3 2 31 31 H 1.08999 * 109.46975 * 59.99641 * 4 3 2 32 32 H 1.09004 * 109.46998 * 299.99720 * 5 3 2 33 33 H 1.09001 * 109.47407 * 59.99090 * 5 3 2 34 34 H 1.08993 * 109.47454 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47390 * 59.99950 * 6 3 2 36 36 H 1.09004 * 109.47301 * 300.00693 * 6 3 2 37 37 H 0.96996 * 120.00122 * 5.72752 * 9 7 6 38 38 H 1.08006 * 119.97708 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.69243 * 179.76358 * 12 11 10 40 40 H 1.08004 * 119.70407 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.02997 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00063 * 354.93583 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5300 2.1639 -1.2491 6 6 3.5700 1.4425 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2842 3.7852 0.0004 9 7 5.3974 3.1095 -0.0009 10 6 5.8623 4.4153 0.1198 11 6 5.0385 5.4065 0.6306 12 6 5.5040 6.7031 0.7433 13 6 6.7970 7.0266 0.3537 14 6 7.6311 6.0697 -0.1470 15 6 7.1822 4.7416 -0.2712 16 6 8.0379 3.7464 -0.7884 17 1 7.6224 2.8779 -1.2777 18 6 9.4254 3.8846 -0.6672 19 7 10.2210 3.2276 -1.4719 20 14 10.1414 5.0071 0.6431 21 1 10.3032 6.3751 0.0884 22 1 9.2255 5.0517 1.8111 23 1 11.4647 4.4869 1.0712 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.8937 3.1912 1.2496 30 1 0.4400 2.1637 1.2494 31 1 1.8933 1.6498 2.1393 32 1 1.8933 1.6501 -2.1392 33 1 0.4400 2.1638 -1.2492 34 1 1.8930 3.1916 -1.2489 35 1 3.9330 0.9289 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 6.0269 2.3765 -0.0859 38 1 4.0308 5.1663 0.9362 39 1 4.8561 7.4716 1.1384 40 1 7.1458 8.0443 0.4486 41 1 8.6352 6.3311 -0.4469 42 1 9.8533 2.5894 -2.1031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344384006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:04 Heat of formation + Delta-G solvation = -34.791730 kcal Electronic energy + Delta-G solvation = -21610.147641 eV Core-core repulsion = 18554.165190 eV Total energy + Delta-G solvation = -3055.982451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16785 -38.11787 -36.66272 -33.93345 -33.74255 -30.95989 -30.24527 -29.06993 -27.27670 -27.07863 -24.80235 -23.90222 -22.10923 -20.55663 -19.53528 -18.51759 -18.22541 -16.72734 -16.43344 -15.20534 -14.93870 -14.79207 -14.65217 -14.33714 -13.97876 -13.57650 -13.21138 -12.97755 -12.65858 -12.56396 -12.23232 -12.09492 -11.87092 -11.78169 -11.67064 -11.11377 -11.02355 -10.97504 -10.81976 -10.57985 -10.45933 -10.42789 -10.42142 -9.87607 -9.60101 -9.42968 -9.06618 -8.60027 -7.75267 -7.38422 -6.99374 -4.55421 2.42422 2.71035 3.17921 3.24794 3.38776 3.52856 3.83237 3.97378 4.52595 4.75060 4.87050 4.88281 5.23901 5.28937 5.40035 5.45499 5.57317 5.65070 5.70964 5.73681 5.90848 5.96112 6.01495 6.05198 6.11461 6.19699 6.21587 6.25250 6.35226 6.41579 6.61506 6.67028 6.79257 6.84856 7.06968 7.34519 7.36352 7.51163 7.69657 7.84880 7.92541 8.23545 8.36859 8.49020 8.69851 8.90420 9.93484 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.004755 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.227263 B = 5886.557694 C = 6622.494145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.043 4.043 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.133 4.133 7 C 0.498 3.502 8 O -0.529 6.529 9 N -0.638 5.638 10 C 0.025 3.975 11 C -0.093 4.093 12 C -0.231 4.231 13 C -0.089 4.089 14 C -0.235 4.235 15 C 0.085 3.915 16 C -0.525 4.525 17 H 0.074 0.926 18 C 0.046 3.954 19 N -0.813 5.813 20 Si 1.075 2.925 21 H -0.276 1.276 22 H -0.264 1.264 23 H -0.291 1.291 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.405 0.595 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 -5.651 3.372 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.044 4.044 4 C -0.211 4.211 5 C -0.212 4.212 6 C -0.173 4.173 7 C 0.286 3.714 8 O -0.409 6.409 9 N -0.279 5.279 10 C -0.069 4.069 11 C -0.113 4.113 12 C -0.250 4.250 13 C -0.108 4.108 14 C -0.255 4.255 15 C 0.081 3.919 16 C -0.553 4.553 17 H 0.092 0.908 18 C -0.174 4.174 19 N -0.435 5.435 20 Si 0.901 3.099 21 H -0.203 1.203 22 H -0.188 1.188 23 H -0.218 1.218 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.241 0.759 38 H 0.149 0.851 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.270 -4.548 3.882 11.884 hybrid contribution -0.965 -1.193 -0.939 1.800 sum -11.236 -5.741 2.943 12.956 Atomic orbital electron populations 1.21865 0.95945 1.01048 1.02232 1.21596 0.96063 0.95951 1.01599 1.20229 0.92248 0.94785 0.97102 1.22151 1.00439 1.03008 0.95517 1.22153 1.00407 1.03072 0.95530 1.21758 0.97057 0.94552 1.03899 1.20567 0.82166 0.91405 0.77253 1.90436 1.54826 1.45920 1.49712 1.43072 1.06750 1.08593 1.69502 1.17768 0.96186 0.83687 1.09294 1.21168 0.99693 0.92330 0.98105 1.20352 0.96473 0.95994 1.12223 1.20383 0.94209 0.97503 0.98656 1.20705 1.00384 0.92971 1.11424 1.17493 0.91057 0.92778 0.90579 1.20360 0.92990 1.07017 1.34966 0.90787 1.27246 0.93862 0.98452 0.97796 1.70568 1.40411 1.18850 1.13696 0.83568 0.75473 0.74922 0.75915 1.20257 1.18817 1.21829 0.93273 0.92406 0.92413 0.92203 0.92192 0.89541 0.93062 0.93810 0.93835 0.93081 0.89491 0.89407 0.89289 0.75937 0.85076 0.88732 0.88877 0.87460 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.21 37.16 0.34 -1.08 16 2 C -0.11 -1.16 4.99 -26.73 -0.13 -1.29 16 3 C -0.04 -0.53 0.54 -154.51 -0.08 -0.62 16 4 C -0.15 -2.00 7.82 37.16 0.29 -1.71 16 5 C -0.15 -2.06 7.82 37.16 0.29 -1.77 16 6 C -0.13 -1.75 4.77 -27.89 -0.13 -1.88 16 7 C 0.50 8.79 7.08 -10.99 -0.08 8.72 16 8 O -0.53 -10.43 8.23 5.55 0.05 -10.38 16 9 N -0.64 -12.63 5.18 -9.47 -0.05 -12.68 16 10 C 0.02 0.58 6.54 -83.17 -0.54 0.04 16 11 C -0.09 -2.12 8.78 -39.44 -0.35 -2.47 16 12 C -0.23 -5.08 10.04 -39.36 -0.39 -5.47 16 13 C -0.09 -1.97 9.96 -39.99 -0.40 -2.37 16 14 C -0.24 -5.69 7.33 -39.28 -0.29 -5.98 16 15 C 0.09 2.13 5.18 -106.65 -0.55 1.57 16 16 C -0.52 -13.31 8.75 -37.86 -0.33 -13.64 16 17 H 0.07 1.88 7.19 -52.49 -0.38 1.50 16 18 C 0.05 1.17 5.38 -17.33 -0.09 1.08 16 19 N -0.81 -21.02 13.66 55.55 0.76 -20.26 16 20 Si 1.07 23.77 25.01 -169.99 -4.25 19.52 16 21 H -0.28 -5.86 6.37 56.52 0.36 -5.50 16 22 H -0.26 -5.83 7.10 56.52 0.40 -5.43 16 23 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 26 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.36 5.51 -51.93 -0.29 1.07 16 30 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 34 H 0.09 1.42 5.51 -51.93 -0.29 1.13 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 7.44 7.33 -40.82 -0.30 7.14 16 38 H 0.13 2.93 5.40 -52.48 -0.28 2.65 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.11 2.56 4.34 -52.49 -0.23 2.33 16 42 H 0.29 7.16 8.73 -40.82 -0.36 6.81 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -27.27 319.70 -7.23 -34.50 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.09 Total: 11.35 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.45 Total: -26.86 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.71 Total: -32.95 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.05 Total: -10.38 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.25 Total: 19.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.27 -7.23 -34.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344384006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.294 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds