Wall clock time and date at job start Mon Mar 30 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.38229 * 120.00000 * 269.72987 * 5 4 2 7 7 C 1.38244 * 119.99905 * 179.76688 * 6 5 4 8 8 C 1.38238 * 119.99810 * 0.48121 * 7 6 5 9 9 C 1.50696 * 119.99633 * 179.77245 * 8 7 6 10 10 C 1.50703 * 109.46699 * 270.01773 * 9 8 7 11 11 O 1.21277 * 120.00187 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99524 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46965 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00040 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00053 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99978 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46702 * 90.00745 * 18 16 14 20 20 H 1.48500 * 109.46966 * 209.99848 * 18 16 14 21 21 H 1.48485 * 109.47376 * 330.00541 * 18 16 14 22 22 C 1.38228 * 119.99924 * 359.79100 * 8 7 6 23 23 C 1.38235 * 119.99690 * 89.99755 * 5 4 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 33 33 H 1.07998 * 120.00278 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.99690 * 180.25287 * 7 6 5 35 35 H 1.08993 * 109.47401 * 30.01835 * 9 8 7 36 36 H 1.09003 * 109.46743 * 150.02272 * 9 8 7 37 37 H 0.96994 * 120.00024 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47154 * 299.99937 * 13 12 10 39 39 H 1.09003 * 109.47349 * 60.00329 * 13 12 10 40 40 H 0.97001 * 120.00169 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00324 * 179.97438 * 22 8 7 42 42 H 1.07992 * 120.00469 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4839 -3.0975 -0.6000 7 6 2.1160 -4.4287 -0.5404 8 6 0.9100 -4.8373 -1.0785 9 6 0.5113 -6.2893 -1.0181 10 6 1.0136 -6.9997 -2.2485 11 8 1.6346 -6.3873 -3.0913 12 7 0.7727 -8.3157 -2.4124 13 6 1.2615 -9.0064 -3.6083 14 6 0.8617 -10.4582 -3.5486 15 1 0.3000 -10.8293 -2.7040 16 6 1.2138 -11.3128 -4.5715 17 7 0.8653 -12.5799 -4.5192 18 14 2.1859 -10.6711 -6.0319 19 1 3.6390 -10.8027 -5.7555 20 1 1.8390 -11.4588 -7.2421 21 1 1.8526 -9.2421 -6.2590 22 6 0.0700 -3.9140 -1.6724 23 6 0.4356 -2.5819 -1.7274 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6055 -0.2618 -2.1370 32 1 3.1264 -0.6443 -1.2951 33 1 3.4281 -2.7790 -0.1835 34 1 2.7725 -5.1501 -0.0766 35 1 0.9459 -6.7487 -0.1304 36 1 -0.5750 -6.3661 -0.9722 37 1 0.2757 -8.8053 -1.7386 38 1 0.8277 -8.5466 -4.4963 39 1 2.3479 -8.9300 -3.6535 40 1 1.1127 -13.1812 -5.2391 41 1 -0.8720 -4.2331 -2.0932 42 1 -0.2206 -1.8606 -2.1917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350870057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:05 Heat of formation + Delta-G solvation = -44.930424 kcal Electronic energy + Delta-G solvation = -20234.257573 eV Core-core repulsion = 17177.835475 eV Total energy + Delta-G solvation = -3056.422098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86001 -38.64695 -36.44726 -34.27765 -32.76168 -32.29970 -30.86568 -29.33508 -27.63525 -27.39949 -25.20505 -22.66448 -22.22028 -21.03780 -20.13363 -19.76707 -17.27922 -16.34466 -15.91499 -15.80386 -15.44839 -14.89346 -14.75066 -14.49977 -14.31187 -13.99727 -13.56783 -13.33371 -12.99153 -12.65658 -12.58043 -12.43128 -12.27695 -12.19318 -12.02539 -11.58556 -11.56164 -11.08967 -11.01162 -10.94830 -10.79764 -10.75897 -10.69697 -9.97162 -9.50031 -9.25695 -8.79114 -8.77587 -8.38252 -8.13519 -6.21764 -4.23936 1.40532 1.52340 3.24599 3.28149 3.33402 3.42390 3.71004 4.21568 4.33686 4.56204 4.61188 4.72395 4.85125 4.89770 5.07882 5.12120 5.13520 5.22733 5.36266 5.41461 5.48039 5.50620 5.58011 5.58653 5.63701 5.67038 5.68763 5.80267 5.84556 6.04625 6.08084 6.15439 6.17690 6.49345 6.66876 6.72400 6.81844 7.07744 7.10336 7.23861 7.39988 8.14067 8.52555 8.75266 8.95872 9.38665 10.90151 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043836 B = 0.002868 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.592844 B = 9758.970055 C = 9993.526369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.086 4.086 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.059 4.059 9 C -0.106 4.106 10 C 0.501 3.499 11 O -0.550 6.550 12 N -0.708 5.708 13 C 0.221 3.779 14 C -0.543 4.543 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.893 5.893 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.104 4.104 23 C -0.115 4.115 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.396 0.604 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.267 0.733 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 23.816 11.055 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.059 4.059 9 C -0.146 4.146 10 C 0.285 3.715 11 O -0.429 6.429 12 N -0.357 5.357 13 C 0.098 3.902 14 C -0.581 4.581 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.530 5.530 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.185 1.185 22 C -0.122 4.122 23 C -0.133 4.133 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.230 0.770 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.092 24.046 10.324 26.169 hybrid contribution 0.264 -0.267 -0.530 0.649 sum 0.172 23.779 9.794 25.718 Atomic orbital electron populations 1.21922 0.95175 1.02346 1.01342 1.21082 0.96160 0.95662 0.98049 1.21856 1.00913 0.96014 1.01710 1.20660 1.00993 0.91384 0.98199 1.19760 0.94810 0.95223 0.98841 1.20913 0.99302 0.92965 1.00390 1.20959 0.95670 0.95805 0.99697 1.19317 0.94835 0.93809 0.97949 1.20725 1.02981 0.92674 0.98239 1.20410 0.80678 0.82701 0.87669 1.90673 1.41296 1.66276 1.44639 1.46197 1.56081 1.08421 1.24957 1.19476 0.94675 0.92555 0.83462 1.21102 1.37570 0.91094 1.08352 0.90240 1.24803 0.95228 0.94604 0.98038 1.69883 1.45873 1.03760 1.33472 0.86812 0.80796 0.79894 0.82168 1.19855 1.20891 1.18521 1.20964 0.99742 0.92970 0.98541 1.20920 0.96412 0.95633 1.00375 0.92836 0.91932 0.93042 0.91147 0.92745 0.92733 0.92697 0.91162 0.91180 0.86465 0.86321 0.88328 0.88330 0.77011 0.95789 0.96248 0.92268 0.86324 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.76 37.16 0.33 -0.83 16 2 C -0.09 -0.70 2.91 -90.62 -0.26 -0.97 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C -0.08 -0.67 4.84 -27.89 -0.13 -0.80 16 5 C -0.09 -0.98 4.71 -104.63 -0.49 -1.48 16 6 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 7 C -0.10 -1.38 9.70 -39.58 -0.38 -1.77 16 8 C -0.06 -0.83 4.37 -104.63 -0.46 -1.28 16 9 C -0.11 -1.44 5.83 -29.04 -0.17 -1.61 16 10 C 0.50 9.55 7.82 -10.98 -0.09 9.46 16 11 O -0.55 -12.79 16.03 5.56 0.09 -12.70 16 12 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 13 C 0.22 5.49 4.50 -5.19 -0.02 5.46 16 14 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 15 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 18 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 22 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16 23 C -0.12 -1.38 7.96 -39.58 -0.32 -1.69 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.54 6.27 -51.93 -0.33 0.22 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 37 H 0.40 6.96 8.32 -40.82 -0.34 6.62 16 38 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -32.70 347.99 -8.68 -41.39 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.92 Total: 2.50 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.86 Total: -12.92 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.43 Total: -40.50 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.70 -8.68 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.545 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds