Wall clock time and date at job start Mon Mar 30 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.38229 * 120.00000 * 269.72987 * 5 4 2 7 7 C 1.38244 * 119.99905 * 179.76688 * 6 5 4 8 8 C 1.38238 * 119.99810 * 0.48121 * 7 6 5 9 9 C 1.50696 * 119.99633 * 179.77245 * 8 7 6 10 10 C 1.50703 * 109.46699 * 270.01773 * 9 8 7 11 11 O 1.21277 * 120.00187 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99524 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46965 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00040 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00053 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99978 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46702 * 90.00745 * 18 16 14 20 20 H 1.48500 * 109.46966 * 209.99848 * 18 16 14 21 21 H 1.48485 * 109.47376 * 330.00541 * 18 16 14 22 22 C 1.38228 * 119.99924 * 359.79100 * 8 7 6 23 23 C 1.38235 * 119.99690 * 89.99755 * 5 4 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 33 33 H 1.07998 * 120.00278 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.99690 * 180.25287 * 7 6 5 35 35 H 1.08993 * 109.47401 * 30.01835 * 9 8 7 36 36 H 1.09003 * 109.46743 * 150.02272 * 9 8 7 37 37 H 0.96994 * 120.00024 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47154 * 299.99937 * 13 12 10 39 39 H 1.09003 * 109.47349 * 60.00329 * 13 12 10 40 40 H 0.97001 * 120.00169 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00324 * 179.97438 * 22 8 7 42 42 H 1.07992 * 120.00469 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4839 -3.0975 -0.6000 7 6 2.1160 -4.4287 -0.5404 8 6 0.9100 -4.8373 -1.0785 9 6 0.5113 -6.2893 -1.0181 10 6 1.0136 -6.9997 -2.2485 11 8 1.6346 -6.3873 -3.0913 12 7 0.7727 -8.3157 -2.4124 13 6 1.2615 -9.0064 -3.6083 14 6 0.8617 -10.4582 -3.5486 15 1 0.3000 -10.8293 -2.7040 16 6 1.2138 -11.3128 -4.5715 17 7 0.8653 -12.5799 -4.5192 18 14 2.1859 -10.6711 -6.0319 19 1 3.6390 -10.8027 -5.7555 20 1 1.8390 -11.4588 -7.2421 21 1 1.8526 -9.2421 -6.2590 22 6 0.0700 -3.9140 -1.6724 23 6 0.4356 -2.5819 -1.7274 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6055 -0.2618 -2.1370 32 1 3.1264 -0.6443 -1.2951 33 1 3.4281 -2.7790 -0.1835 34 1 2.7725 -5.1501 -0.0766 35 1 0.9459 -6.7487 -0.1304 36 1 -0.5750 -6.3661 -0.9722 37 1 0.2757 -8.8053 -1.7386 38 1 0.8277 -8.5466 -4.4963 39 1 2.3479 -8.9300 -3.6535 40 1 1.1127 -13.1812 -5.2391 41 1 -0.8720 -4.2331 -2.0932 42 1 -0.2206 -1.8606 -2.1917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350870057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:04 Heat of formation + Delta-G solvation = -64.179105 kcal Electronic energy + Delta-G solvation = -20235.092259 eV Core-core repulsion = 17177.835475 eV Total energy + Delta-G solvation = -3057.256783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00508 -39.96258 -37.20872 -36.12615 -34.42265 -33.67649 -31.79502 -30.68251 -29.16418 -27.96147 -26.22843 -24.05522 -23.59057 -22.16042 -21.30874 -20.77635 -19.16568 -17.71327 -17.38693 -16.88446 -16.73119 -16.12842 -15.98334 -15.71580 -15.36692 -15.14690 -14.76185 -14.38742 -14.29552 -14.27167 -14.16275 -13.36606 -13.15030 -13.08008 -13.04657 -12.88053 -12.70169 -12.56779 -12.30433 -11.95211 -11.82457 -11.68290 -11.66227 -11.48115 -11.47034 -10.93267 -10.85626 -9.92394 -9.73543 -9.34955 -8.41310 -6.48089 0.44134 0.57262 1.30922 1.33320 1.45986 1.75651 2.26586 2.47107 2.93891 2.98436 3.73031 3.89540 3.91546 4.07741 4.12087 4.17225 4.21422 4.37077 4.43364 4.59663 4.66863 4.69878 4.78933 4.80834 4.85410 4.88969 4.99099 5.01783 5.08848 5.09886 5.18850 5.24643 5.25472 5.36026 5.46422 5.49966 5.53151 5.56930 5.74067 5.78113 6.08096 6.18300 6.53150 6.86207 7.14952 7.43752 8.73338 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043836 B = 0.002868 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.592844 B = 9758.970055 C = 9993.526369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.086 4.086 6 C -0.127 4.127 7 C -0.119 4.119 8 C -0.082 4.082 9 C -0.092 4.092 10 C 0.501 3.499 11 O -0.593 6.593 12 N -0.707 5.707 13 C 0.232 3.768 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.026 3.974 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.263 1.263 22 C -0.120 4.120 23 C -0.122 4.122 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.272 0.728 41 H 0.125 0.875 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 25.746 11.497 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.086 4.086 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.083 4.083 9 C -0.132 4.132 10 C 0.289 3.711 11 O -0.474 6.474 12 N -0.358 5.358 13 C 0.108 3.892 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.138 4.138 23 C -0.140 4.140 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.246 0.754 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.148 25.978 10.802 28.134 hybrid contribution 0.156 -0.818 -0.605 1.029 sum 0.305 25.160 10.197 27.150 Atomic orbital electron populations 1.21914 0.95155 1.01714 1.01946 1.21046 0.96141 0.96288 0.97136 1.21832 1.01162 0.95057 1.02191 1.20703 1.01451 0.89872 0.99020 1.20082 0.94368 0.96474 0.97674 1.21202 1.00186 0.92727 1.00401 1.21190 0.95731 0.96690 1.00048 1.19463 0.95578 0.94030 0.99212 1.20708 1.04565 0.91977 0.95920 1.21335 0.79298 0.81811 0.88682 1.90647 1.43154 1.66990 1.46644 1.46061 1.56461 1.09192 1.24042 1.19063 0.93885 0.91244 0.84985 1.21303 1.36905 0.92487 1.07701 0.92093 1.25599 0.96265 0.94786 1.00790 1.69980 1.47264 1.04939 1.34716 0.85865 0.79667 0.79129 0.79267 1.19019 1.19698 1.18725 1.21196 1.00168 0.93659 0.98734 1.21175 0.96947 0.95559 1.00279 0.92335 0.93132 0.92387 0.91657 0.92153 0.92358 0.92353 0.90668 0.90585 0.84726 0.85708 0.85638 0.85649 0.75429 0.97243 0.97342 0.91833 0.85726 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.76 71.98 0.63 -1.41 16 2 C -0.09 -1.19 2.91 -10.79 -0.03 -1.22 16 3 C -0.15 -1.56 9.19 71.98 0.66 -0.90 16 4 C -0.07 -1.16 4.84 29.85 0.14 -1.02 16 5 C -0.09 -1.83 4.71 -19.87 -0.09 -1.93 16 6 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 7 C -0.12 -3.04 9.70 22.27 0.22 -2.83 16 8 C -0.08 -2.22 4.37 -19.87 -0.09 -2.31 16 9 C -0.09 -2.33 5.83 29.10 0.17 -2.16 16 10 C 0.50 18.66 7.82 87.66 0.69 19.35 16 11 O -0.59 -27.46 16.03 -3.02 -0.05 -27.50 16 12 N -0.71 -28.25 5.55 -466.77 -2.59 -30.84 16 13 C 0.23 11.55 4.50 85.63 0.38 11.94 16 14 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 15 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 16 C 0.03 1.48 5.47 84.65 0.46 1.94 16 17 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 18 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 22 C -0.12 -3.06 9.70 22.27 0.22 -2.84 16 23 C -0.12 -2.75 7.96 22.27 0.18 -2.57 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.81 6.27 -2.39 -0.01 0.79 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.08 1.12 8.08 -2.38 -0.02 1.10 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.13 2.50 8.08 -2.39 -0.02 2.48 16 36 H 0.13 2.50 8.09 -2.39 -0.02 2.48 16 37 H 0.41 14.04 8.32 -92.71 -0.77 13.26 16 38 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 39 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.13 2.47 8.04 -2.91 -0.02 2.45 16 Total: -1.00 -70.00 347.99 3.71 -66.29 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.16 Total: 19.72 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.01 Total: -18.73 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.29 Total: -86.30 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -70.00 3.71 -66.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.111 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds