Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 C 1.50705 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.37996 * 120.07136 * 0.02562 * 4 3 2 6 6 C 1.38324 * 120.14125 * 180.02562 * 5 4 3 7 7 C 1.38363 * 120.28448 * 359.97438 * 6 5 4 8 8 C 1.37954 * 120.14317 * 359.74261 * 7 6 5 9 9 C 1.39518 * 120.07171 * 180.02562 * 4 3 2 10 10 C 1.47806 * 120.13863 * 359.97438 * 9 4 3 11 11 C 1.32570 * 119.99916 * 138.26701 * 10 9 4 12 12 C 1.50698 * 120.00280 * 173.80601 * 11 10 9 13 13 C 1.50695 * 119.99837 * 353.80722 * 11 10 9 14 14 N 1.46901 * 109.47356 * 97.93399 * 13 11 10 15 15 C 1.46898 * 111.00140 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00344 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00476 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99289 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00409 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46910 * 60.00181 * 20 18 16 22 22 H 1.48493 * 109.47151 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47087 * 300.00285 * 20 18 16 24 24 H 1.08996 * 109.47577 * 60.00315 * 1 2 3 25 25 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47010 * 299.99924 * 1 2 3 27 27 H 1.08999 * 109.47148 * 60.00091 * 3 2 1 28 28 H 1.08997 * 109.47079 * 300.00074 * 3 2 1 29 29 H 1.08003 * 119.92762 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.85846 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.93179 * 179.97438 * 7 6 5 32 32 H 1.08005 * 120.07359 * 180.27516 * 8 7 6 33 33 H 1.08000 * 120.00686 * 317.99425 * 10 9 4 34 34 H 1.09003 * 109.47431 * 89.99902 * 12 11 10 35 35 H 1.08997 * 109.47141 * 210.00255 * 12 11 10 36 36 H 1.09002 * 109.46711 * 330.00141 * 12 11 10 37 37 H 1.09004 * 109.47265 * 217.93284 * 13 11 10 38 38 H 1.09002 * 109.47184 * 337.93477 * 13 11 10 39 39 H 1.00902 * 111.00226 * 56.04415 * 14 13 11 40 40 H 1.09001 * 109.47113 * 299.99381 * 15 14 13 41 41 H 1.09000 * 109.47516 * 59.99786 * 15 14 13 42 42 H 0.97003 * 119.99478 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1076 -0.0585 -0.0016 6 6 5.4863 -0.1694 -0.0017 7 6 6.2776 0.9657 -0.0013 8 6 5.6952 2.2162 -0.0062 9 6 4.3047 2.3350 -0.0002 10 6 3.6740 3.6717 0.0003 11 6 4.1659 4.6365 0.7649 12 6 3.6130 6.0347 0.6629 13 6 5.2781 4.3350 1.7360 14 7 6.5656 4.7152 1.1395 15 6 7.6756 4.4344 2.0597 16 6 8.9768 4.8371 1.4150 17 1 8.9790 5.2591 0.4208 18 6 10.1646 4.6670 2.0942 19 7 10.1618 4.1537 3.3051 20 14 11.7775 5.1655 1.2947 21 1 11.7475 6.6171 0.9827 22 1 12.8995 4.8829 2.2255 23 1 11.9677 4.3935 0.0405 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.4954 -0.9483 -0.0016 30 1 5.9472 -1.1461 -0.0021 31 1 7.3536 0.8725 -0.0009 32 1 6.3139 3.1014 -0.0103 33 1 2.8150 3.8638 -0.6255 34 1 2.7862 6.1505 1.3638 35 1 4.3963 6.7535 0.9031 36 1 3.2565 6.2112 -0.3519 37 1 5.1220 4.9010 2.6544 38 1 5.2835 3.2689 1.9627 39 1 6.5628 5.6851 0.8610 40 1 7.5363 5.0009 2.9805 41 1 7.6974 3.3689 2.2884 42 1 10.9974 4.0343 3.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353239608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = -10.534562 kcal Electronic energy + Delta-G solvation = -20969.725260 eV Core-core repulsion = 17914.794678 eV Total energy + Delta-G solvation = -3054.930581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.47514 -37.71389 -36.47106 -34.01893 -32.25762 -31.57040 -30.61383 -27.42066 -27.33220 -26.31409 -25.23753 -24.20305 -21.78168 -21.34634 -20.75465 -18.09489 -16.62690 -16.46287 -16.15777 -15.97072 -15.31102 -15.00968 -14.62890 -14.27365 -13.96494 -13.79868 -13.48728 -13.18406 -12.93932 -12.66927 -12.51962 -12.34654 -12.01112 -11.77881 -11.62298 -11.50285 -11.21424 -10.97823 -10.74571 -10.66612 -10.49839 -10.29973 -9.94402 -9.93147 -9.28830 -9.12621 -8.49170 -8.26912 -7.78914 -7.33632 -6.04416 -4.06949 1.39327 1.88144 2.62606 3.32789 3.37079 3.39923 3.63308 4.22640 4.42250 4.89515 5.02407 5.10550 5.12822 5.17712 5.26557 5.31491 5.36923 5.44030 5.45459 5.48107 5.53284 5.65628 5.76090 5.77759 5.93920 6.01282 6.05323 6.21092 6.29919 6.35497 6.62106 6.73018 6.80563 6.97689 7.11898 7.16069 7.20839 7.25867 7.39085 7.54968 7.75005 8.09801 8.32660 8.55413 9.01799 9.58073 11.06412 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.004182 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.725305 B = 6693.965285 C = 7555.714267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.109 3.891 4 C -0.093 4.093 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.100 4.100 9 C -0.054 4.054 10 C -0.130 4.130 11 C -0.098 4.098 12 C -0.116 4.116 13 C 0.082 3.918 14 N -0.679 5.679 15 C 0.193 3.807 16 C -0.516 4.516 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.178 0.822 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.330 0.670 40 H -0.013 1.013 41 H 0.030 0.970 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 -4.123 -6.259 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.033 3.967 4 C -0.093 4.093 5 C -0.131 4.131 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.117 4.117 9 C -0.054 4.054 10 C -0.149 4.149 11 C -0.098 4.098 12 C -0.173 4.173 13 C -0.047 4.047 14 N -0.309 5.309 15 C 0.066 3.934 16 C -0.554 4.554 17 H 0.080 0.920 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.201 1.201 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.195 0.805 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.005 0.995 41 H 0.048 0.952 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.309 -4.931 -6.421 19.109 hybrid contribution 0.572 1.047 0.400 1.259 sum -16.737 -3.883 -6.021 18.206 Atomic orbital electron populations 1.22721 0.81193 1.02641 0.99923 1.87859 1.19406 1.27979 1.95447 1.21189 0.90846 0.84301 1.00318 1.19657 0.93039 0.93545 1.03106 1.20741 0.94386 0.96984 1.00941 1.21210 0.93752 0.98489 1.01014 1.21279 1.00202 0.92602 0.99830 1.22666 0.94077 1.00393 0.94605 1.18730 0.93292 0.91623 1.01727 1.21297 1.00234 0.92258 1.01106 1.22130 0.96310 0.94563 0.96805 1.20811 1.00816 0.93924 1.01722 1.21091 0.88818 1.01394 0.93422 1.60687 1.01437 1.25643 1.43166 1.19589 0.87298 0.96858 0.89634 1.21126 0.90734 1.41629 1.01954 0.91972 1.24980 0.99291 0.95312 0.94863 1.69957 1.27182 1.44706 1.11719 0.86557 0.82719 0.78972 0.79122 1.20307 1.21384 1.20110 0.94152 0.89698 0.94100 0.92192 0.92359 0.85857 0.86754 0.85957 0.80537 0.87097 0.91794 0.91460 0.91895 0.95601 0.90381 0.85297 0.99529 0.95174 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.76 9.19 -35.23 -0.32 -5.08 16 3 C 0.11 1.35 5.30 36.01 0.19 1.54 16 4 C -0.09 -1.41 5.91 -104.23 -0.62 -2.02 16 5 C -0.11 -1.71 9.37 -39.64 -0.37 -2.08 16 6 C -0.13 -1.95 10.04 -39.50 -0.40 -2.35 16 7 C -0.12 -2.09 10.03 -39.64 -0.40 -2.49 16 8 C -0.10 -1.80 7.61 -39.20 -0.30 -2.10 16 9 C -0.05 -0.86 4.96 -105.02 -0.52 -1.38 16 10 C -0.13 -1.85 8.51 -37.58 -0.32 -2.17 16 11 C -0.10 -1.43 5.50 -101.26 -0.56 -1.99 16 12 C -0.12 -1.37 10.04 36.00 0.36 -1.00 16 13 C 0.08 1.46 4.78 -4.98 -0.02 1.43 16 14 N -0.68 -13.87 4.10 -116.34 -0.48 -14.35 16 15 C 0.19 4.90 5.44 -4.98 -0.03 4.88 16 16 C -0.52 -14.23 9.32 -34.44 -0.32 -14.55 16 17 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 29 H 0.12 1.73 7.00 -52.48 -0.37 1.37 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.18 3.54 4.85 -52.48 -0.25 3.28 16 33 H 0.11 1.33 7.74 -52.49 -0.41 0.92 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.51 5.87 -51.93 -0.30 1.20 16 39 H 0.33 6.45 8.72 -39.29 -0.34 6.11 16 40 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -29.90 346.39 -8.85 -38.75 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.70 Total: 6.21 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.28 Total: -21.41 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.26 Total: -40.14 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.32 Total: -5.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.90 -8.85 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353239608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.211 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds