Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 C 1.50705 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.37996 * 120.07136 * 0.02562 * 4 3 2 6 6 C 1.38324 * 120.14125 * 180.02562 * 5 4 3 7 7 C 1.38363 * 120.28448 * 359.97438 * 6 5 4 8 8 C 1.37954 * 120.14317 * 359.74261 * 7 6 5 9 9 C 1.39518 * 120.07171 * 180.02562 * 4 3 2 10 10 C 1.47806 * 120.13863 * 359.97438 * 9 4 3 11 11 C 1.32570 * 119.99916 * 138.26701 * 10 9 4 12 12 C 1.50698 * 120.00280 * 173.80601 * 11 10 9 13 13 C 1.50695 * 119.99837 * 353.80722 * 11 10 9 14 14 N 1.46901 * 109.47356 * 97.93399 * 13 11 10 15 15 C 1.46898 * 111.00140 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00344 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00476 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99289 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00409 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46910 * 60.00181 * 20 18 16 22 22 H 1.48493 * 109.47151 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47087 * 300.00285 * 20 18 16 24 24 H 1.08996 * 109.47577 * 60.00315 * 1 2 3 25 25 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47010 * 299.99924 * 1 2 3 27 27 H 1.08999 * 109.47148 * 60.00091 * 3 2 1 28 28 H 1.08997 * 109.47079 * 300.00074 * 3 2 1 29 29 H 1.08003 * 119.92762 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.85846 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.93179 * 179.97438 * 7 6 5 32 32 H 1.08005 * 120.07359 * 180.27516 * 8 7 6 33 33 H 1.08000 * 120.00686 * 317.99425 * 10 9 4 34 34 H 1.09003 * 109.47431 * 89.99902 * 12 11 10 35 35 H 1.08997 * 109.47141 * 210.00255 * 12 11 10 36 36 H 1.09002 * 109.46711 * 330.00141 * 12 11 10 37 37 H 1.09004 * 109.47265 * 217.93284 * 13 11 10 38 38 H 1.09002 * 109.47184 * 337.93477 * 13 11 10 39 39 H 1.00902 * 111.00226 * 56.04415 * 14 13 11 40 40 H 1.09001 * 109.47113 * 299.99381 * 15 14 13 41 41 H 1.09000 * 109.47516 * 59.99786 * 15 14 13 42 42 H 0.97003 * 119.99478 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1076 -0.0585 -0.0016 6 6 5.4863 -0.1694 -0.0017 7 6 6.2776 0.9657 -0.0013 8 6 5.6952 2.2162 -0.0062 9 6 4.3047 2.3350 -0.0002 10 6 3.6740 3.6717 0.0003 11 6 4.1659 4.6365 0.7649 12 6 3.6130 6.0347 0.6629 13 6 5.2781 4.3350 1.7360 14 7 6.5656 4.7152 1.1395 15 6 7.6756 4.4344 2.0597 16 6 8.9768 4.8371 1.4150 17 1 8.9790 5.2591 0.4208 18 6 10.1646 4.6670 2.0942 19 7 10.1618 4.1537 3.3051 20 14 11.7775 5.1655 1.2947 21 1 11.7475 6.6171 0.9827 22 1 12.8995 4.8829 2.2255 23 1 11.9677 4.3935 0.0405 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.4954 -0.9483 -0.0016 30 1 5.9472 -1.1461 -0.0021 31 1 7.3536 0.8725 -0.0009 32 1 6.3139 3.1014 -0.0103 33 1 2.8150 3.8638 -0.6255 34 1 2.7862 6.1505 1.3638 35 1 4.3963 6.7535 0.9031 36 1 3.2565 6.2112 -0.3519 37 1 5.1220 4.9010 2.6544 38 1 5.2835 3.2689 1.9627 39 1 6.5628 5.6851 0.8610 40 1 7.5363 5.0009 2.9805 41 1 7.6974 3.3689 2.2884 42 1 10.9974 4.0343 3.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353239608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = -27.360193 kcal Electronic energy + Delta-G solvation = -20970.454874 eV Core-core repulsion = 17914.794678 eV Total energy + Delta-G solvation = -3055.660196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66586 -38.68197 -37.83014 -35.72990 -34.10590 -32.83226 -31.79727 -29.20389 -28.33195 -27.31030 -26.21312 -25.91857 -23.48259 -22.87791 -21.94404 -19.45117 -18.40000 -17.56094 -17.31568 -16.96975 -16.77672 -16.50175 -16.10575 -15.47247 -15.35258 -15.09803 -14.88341 -14.49866 -14.23525 -13.89659 -13.80443 -13.49277 -13.42852 -13.07775 -12.94254 -12.88804 -12.70780 -12.55350 -12.31147 -12.21201 -11.94469 -11.74842 -11.50119 -11.27014 -10.76941 -10.65162 -10.36029 -9.52896 -9.17648 -8.92574 -8.21672 -6.32941 0.17154 0.59998 1.40900 1.44391 1.44696 1.52609 2.40316 2.81304 2.96670 3.11835 3.68831 3.82358 3.95954 4.07127 4.20121 4.26295 4.34968 4.39029 4.47569 4.55706 4.60908 4.64437 4.69410 4.78188 4.82854 4.87822 4.91234 4.97224 5.09593 5.11659 5.18204 5.26252 5.39690 5.51258 5.60288 5.66041 5.70801 5.85686 6.00541 6.05014 6.23645 6.29157 6.40789 6.70382 6.88777 7.37873 8.89494 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.004182 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.725305 B = 6693.965285 C = 7555.714267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.113 3.887 4 C -0.094 4.094 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.145 4.145 8 C -0.122 4.122 9 C -0.063 4.063 10 C -0.121 4.121 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.086 3.914 14 N -0.669 5.669 15 C 0.211 3.789 16 C -0.532 4.532 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.269 1.269 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.022 0.978 38 H 0.057 0.943 39 H 0.337 0.663 40 H -0.041 1.041 41 H -0.002 1.002 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.508 -3.650 -7.738 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.037 3.963 4 C -0.094 4.094 5 C -0.135 4.135 6 C -0.144 4.144 7 C -0.163 4.163 8 C -0.140 4.140 9 C -0.063 4.063 10 C -0.140 4.140 11 C -0.104 4.104 12 C -0.167 4.167 13 C -0.043 4.043 14 N -0.300 5.300 15 C 0.084 3.916 16 C -0.571 4.571 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.194 1.194 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.155 0.845 40 H -0.023 1.023 41 H 0.016 0.984 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.214 -4.447 -7.916 21.251 hybrid contribution 1.063 0.808 0.879 1.599 sum -18.150 -3.639 -7.036 19.804 Atomic orbital electron populations 1.22942 0.79140 1.03945 1.01023 1.87815 1.21623 1.27872 1.95663 1.21180 0.88695 0.84855 1.01591 1.20025 0.95002 0.92969 1.01412 1.20990 0.94252 0.97806 1.00420 1.21417 0.94100 0.98703 1.00198 1.21311 1.00020 0.93446 1.01533 1.22517 0.95239 0.99743 0.96524 1.18906 0.92539 0.93263 1.01562 1.21533 1.00700 0.90931 1.00854 1.22098 0.95342 0.96582 0.96395 1.20824 1.01049 0.91317 1.03537 1.21029 0.88743 1.00012 0.94493 1.60566 1.01498 1.26046 1.41874 1.19172 0.88926 0.94210 0.89307 1.21486 0.91779 1.41579 1.02206 0.91536 1.25930 1.03243 0.95084 0.95332 1.70096 1.28247 1.45798 1.13283 0.85414 0.77801 0.79122 0.78140 1.19000 1.21015 1.19377 0.92779 0.88428 0.93217 0.91327 0.90374 0.84475 0.84669 0.87130 0.82916 0.83683 0.89968 0.92148 0.89803 0.95967 0.92424 0.84503 1.02340 0.98412 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.98 9.19 -148.98 -1.37 -10.35 16 3 C 0.11 2.46 5.30 71.24 0.38 2.83 16 4 C -0.09 -2.70 5.91 -19.61 -0.12 -2.82 16 5 C -0.12 -3.43 9.37 22.23 0.21 -3.22 16 6 C -0.13 -3.92 10.04 22.32 0.22 -3.69 16 7 C -0.14 -5.27 10.03 22.23 0.22 -5.05 16 8 C -0.12 -4.59 7.61 22.52 0.17 -4.42 16 9 C -0.06 -1.98 4.96 -20.12 -0.10 -2.08 16 10 C -0.12 -3.21 8.51 23.65 0.20 -3.01 16 11 C -0.10 -2.90 5.50 -17.60 -0.10 -3.00 16 12 C -0.11 -2.31 10.04 71.24 0.72 -1.60 16 13 C 0.09 3.15 4.78 85.56 0.41 3.56 16 14 N -0.67 -28.38 4.10 -521.99 -2.14 -30.52 16 15 C 0.21 11.35 5.44 85.56 0.47 11.82 16 16 C -0.53 -30.18 9.32 25.60 0.24 -29.94 16 17 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 20 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 25 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.41 7.94 -2.39 -0.02 1.39 16 29 H 0.14 3.62 7.00 -2.91 -0.02 3.60 16 30 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.15 6.45 4.85 -2.91 -0.01 6.43 16 33 H 0.15 2.87 7.74 -2.91 -0.02 2.85 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 37 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.06 2.34 5.87 -2.39 -0.01 2.33 16 39 H 0.34 13.42 8.72 -89.69 -0.78 12.64 16 40 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.49 346.39 3.65 -62.83 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.21 Total: 26.63 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.63 Total: -38.43 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -1.85 Total: -87.13 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -1.37 Total: -10.35 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -66.49 3.65 -62.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353239608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.474 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds