Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99769 * 2 1 4 4 C 1.53000 * 109.46917 * 125.00150 * 3 2 1 5 5 C 1.53003 * 109.47191 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47490 * 54.99749 * 5 4 3 7 7 N 1.46906 * 109.47129 * 295.00018 * 5 4 3 8 8 C 1.46900 * 111.00089 * 154.99954 * 7 5 4 9 9 C 1.53005 * 109.46973 * 184.86538 * 8 7 5 10 10 C 1.50702 * 115.54711 * 320.35116 * 9 8 7 11 11 H 1.08002 * 119.99455 * 99.52116 * 10 9 8 12 12 C 1.37867 * 120.00096 * 279.52160 * 10 9 8 13 13 N 1.31517 * 120.00282 * 355.02680 * 12 10 9 14 14 Si 1.86803 * 120.00061 * 175.02832 * 12 10 9 15 15 H 1.48496 * 109.47549 * 89.99784 * 14 12 10 16 16 H 1.48507 * 109.46927 * 210.00111 * 14 12 10 17 17 H 1.48501 * 109.47067 * 329.99425 * 14 12 10 18 18 C 1.52995 * 117.49658 * 174.68148 * 9 8 7 19 19 C 1.52997 * 60.03059 * 252.49737 * 18 9 8 20 20 C 1.50695 * 109.47439 * 174.99976 * 5 4 3 21 21 C 1.34514 * 125.79361 * 259.99956 * 20 5 4 22 22 C 1.41378 * 106.84635 * 179.97438 * 21 20 5 23 23 C 1.34513 * 106.84099 * 0.02562 * 22 21 20 24 24 O 1.34307 * 125.78912 * 79.69235 * 20 5 4 25 25 H 1.08004 * 119.99462 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99913 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00415 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47184 * 5.00226 * 3 2 1 29 29 H 1.08997 * 109.47526 * 245.00221 * 3 2 1 30 30 H 1.08999 * 109.47131 * 60.00044 * 4 3 2 31 31 H 1.08996 * 109.47375 * 299.99625 * 4 3 2 32 32 H 1.00903 * 110.99580 * 31.04498 * 7 5 4 33 33 H 1.09000 * 109.47101 * 64.86623 * 8 7 5 34 34 H 1.09002 * 109.46877 * 304.86084 * 8 7 5 35 35 H 0.96997 * 120.00272 * 180.02562 * 13 12 10 36 36 H 1.08994 * 117.50283 * 0.02562 * 18 9 8 37 37 H 1.09001 * 117.49607 * 144.99415 * 18 9 8 38 38 H 1.09000 * 117.49423 * 107.50760 * 19 18 9 39 39 H 1.09005 * 117.49983 * 252.51904 * 19 18 9 40 40 H 1.08007 * 126.57562 * 359.96144 * 21 20 5 41 41 H 1.07997 * 126.58083 * 180.02562 * 22 21 20 42 42 H 1.07993 * 125.79418 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7995 2.6584 1.1820 6 1 3.0910 3.4867 1.1823 7 7 4.6441 2.7369 -0.0174 8 6 4.9181 4.1344 -0.3778 9 6 5.6953 4.1784 -1.6950 10 6 6.7535 3.1183 -1.8610 11 1 6.5454 2.2346 -2.4459 12 6 7.9871 3.2766 -1.2661 13 7 8.2749 4.3948 -0.6363 14 14 9.2499 1.9029 -1.3546 15 1 10.0887 2.0788 -2.5672 16 1 10.1120 1.9445 -0.1460 17 1 8.5529 0.5933 -1.4205 18 6 5.9704 5.5533 -2.3072 19 6 4.9379 4.6239 -2.9484 20 6 4.6659 2.7382 2.4125 21 6 4.3741 3.4152 3.5376 22 6 5.4557 3.2182 4.4265 23 6 6.3441 2.4331 3.7913 24 8 5.8579 2.1407 2.5739 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 3.7399 0.5066 1.0920 31 1 2.4773 1.2356 2.1130 32 1 4.2238 2.2403 -0.7887 33 1 5.5093 4.6033 0.4088 34 1 3.9764 4.6711 -0.4935 35 1 9.1430 4.5063 -0.2181 36 1 5.5982 6.4264 -1.7715 37 1 6.9169 5.6911 -2.8301 38 1 3.8860 4.8857 -2.8347 39 1 5.2052 4.1500 -3.8929 40 1 3.4842 3.9978 3.7257 41 1 5.5504 3.6209 5.4241 42 1 7.2862 2.0913 4.1938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353589601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = 56.379638 kcal Electronic energy + Delta-G solvation = -21652.711732 eV Core-core repulsion = 18600.682768 eV Total energy + Delta-G solvation = -3052.028964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.00454 -37.62347 -36.23307 -34.22627 -32.43188 -31.74402 -30.60044 -29.12419 -25.96270 -25.12857 -23.60713 -21.70250 -21.19162 -21.00319 -19.84023 -19.53507 -18.95236 -16.79640 -16.14557 -15.52493 -15.37323 -14.95132 -14.54241 -14.30424 -14.26281 -13.57162 -13.38309 -12.94448 -12.58557 -12.33807 -12.30540 -12.11079 -11.89949 -11.66140 -11.32568 -11.15304 -10.81525 -10.76973 -10.76498 -10.59782 -10.37893 -10.07244 -9.44027 -9.34507 -9.27749 -8.87052 -8.25616 -8.02670 -7.89751 -7.53701 -5.84769 -3.86334 2.22110 2.31250 3.04861 3.40935 3.47721 3.52924 3.58190 4.56490 4.66873 4.87777 5.03029 5.05199 5.33422 5.38928 5.41334 5.44451 5.48604 5.52287 5.63098 5.66101 5.80753 5.92047 6.13923 6.16682 6.23626 6.28291 6.31123 6.38385 6.52757 6.56706 6.59540 6.64806 6.74916 6.76924 6.91229 7.03097 7.17382 7.45489 7.54048 7.71854 8.02598 8.05800 8.24442 8.60427 9.09072 9.77388 11.25428 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.006987 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.601795 B = 4006.283111 C = 5042.103658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.100 4.100 4 C -0.112 4.112 5 C 0.159 3.841 6 H 0.063 0.937 7 N -0.649 5.649 8 C 0.110 3.890 9 C 0.046 3.954 10 C -0.469 4.469 11 H 0.055 0.945 12 C 0.079 3.921 13 N -0.881 5.881 14 Si 0.886 3.114 15 H -0.287 1.287 16 H -0.289 1.289 17 H -0.274 1.274 18 C -0.155 4.155 19 C -0.219 4.219 20 C 0.032 3.968 21 C -0.235 4.235 22 C -0.221 4.221 23 C -0.048 4.048 24 O -0.143 6.143 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.342 0.658 33 H 0.068 0.932 34 H -0.004 1.004 35 H 0.255 0.745 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 -4.533 6.212 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.150 4.150 5 C 0.048 3.952 6 H 0.081 0.919 7 N -0.282 5.282 8 C -0.019 4.019 9 C 0.045 3.955 10 C -0.506 4.506 11 H 0.073 0.927 12 C -0.124 4.124 13 N -0.518 5.518 14 Si 0.715 3.285 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.194 4.194 19 C -0.256 4.256 20 C -0.020 4.020 21 C -0.254 4.254 22 C -0.240 4.240 23 C -0.117 4.117 24 O -0.037 6.037 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.014 0.986 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.377 -4.709 6.429 13.084 hybrid contribution 0.008 -0.109 0.022 0.112 sum -10.370 -4.818 6.451 13.128 Atomic orbital electron populations 1.23800 0.95971 1.01556 1.02835 1.22971 0.95901 0.98638 0.98408 1.20852 0.98106 0.95333 0.99427 1.21700 0.97534 0.97546 0.98243 1.20031 0.89898 0.97242 0.88003 0.91926 1.60284 1.46852 1.15712 1.05333 1.21530 0.94941 0.86273 0.99142 1.18908 0.95153 0.94485 0.86909 1.20100 0.95590 1.03367 1.31585 0.92686 1.24807 0.97790 0.94887 0.94882 1.69995 1.21725 1.24350 1.35771 0.86701 0.81488 0.83386 0.76934 1.21330 1.21534 1.19846 1.22486 0.98174 0.94160 1.04542 1.23083 0.94850 1.08005 0.99701 1.22498 0.85742 0.97074 0.96725 1.21429 1.01988 1.07232 0.94801 1.21636 0.95989 1.04884 1.01502 1.23957 1.00464 1.02894 0.84390 1.84180 1.30017 1.57628 1.31826 0.88786 0.88765 0.87309 0.91590 0.90088 0.90277 0.91330 0.83707 0.91340 0.98614 0.93519 0.92299 0.89939 0.92160 0.90593 0.84369 0.84279 0.78981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 14.32 29.01 0.42 -1.59 16 2 C -0.14 -1.53 9.52 -36.03 -0.34 -1.88 16 3 C -0.10 -1.19 5.49 -27.88 -0.15 -1.34 16 4 C -0.11 -1.52 4.77 -26.73 -0.13 -1.64 16 5 C 0.16 2.62 2.50 -68.86 -0.17 2.45 16 6 H 0.06 0.97 7.71 -51.93 -0.40 0.57 16 7 N -0.65 -12.88 5.64 -107.94 -0.61 -13.49 16 8 C 0.11 2.43 5.61 -3.82 -0.02 2.41 16 9 C 0.05 1.12 1.65 -155.62 -0.26 0.86 16 10 C -0.47 -12.64 8.14 -34.44 -0.28 -12.92 16 11 H 0.05 1.49 7.82 -52.49 -0.41 1.08 16 12 C 0.08 2.19 5.44 -17.82 -0.10 2.10 16 13 N -0.88 -25.49 12.87 55.43 0.71 -24.78 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.16 -3.68 9.43 -26.73 -0.25 -3.94 16 19 C -0.22 -4.72 9.89 -26.70 -0.26 -4.98 16 20 C 0.03 0.59 5.98 -35.63 -0.21 0.37 16 21 C -0.23 -3.86 10.80 -39.70 -0.43 -4.29 16 22 C -0.22 -3.46 10.91 -39.70 -0.43 -3.89 16 23 C -0.05 -0.81 12.09 29.42 0.36 -0.45 16 24 O -0.14 -2.88 10.65 5.68 0.06 -2.82 16 25 H 0.09 0.80 8.06 -52.48 -0.42 0.38 16 26 H 0.09 0.87 7.84 -52.49 -0.41 0.46 16 27 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 29 H 0.08 1.04 6.43 -51.93 -0.33 0.70 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.34 6.38 6.41 -39.29 -0.25 6.13 16 33 H 0.07 1.74 8.08 -51.93 -0.42 1.32 16 34 H 0.00 -0.08 7.74 -51.93 -0.40 -0.48 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 38 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 41 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -30.00 353.76 -8.61 -38.62 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.82 Total: 8.93 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -2.27 Total: -28.73 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.10 Total: -38.27 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.06 Total: -2.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.00 -8.61 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353589601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.996 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds