Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99769 * 2 1 4 4 C 1.53000 * 109.46917 * 125.00150 * 3 2 1 5 5 C 1.53003 * 109.47191 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47490 * 54.99749 * 5 4 3 7 7 N 1.46906 * 109.47129 * 295.00018 * 5 4 3 8 8 C 1.46900 * 111.00089 * 154.99954 * 7 5 4 9 9 C 1.53005 * 109.46973 * 184.86538 * 8 7 5 10 10 C 1.50702 * 115.54711 * 320.35116 * 9 8 7 11 11 H 1.08002 * 119.99455 * 99.52116 * 10 9 8 12 12 C 1.37867 * 120.00096 * 279.52160 * 10 9 8 13 13 N 1.31517 * 120.00282 * 355.02680 * 12 10 9 14 14 Si 1.86803 * 120.00061 * 175.02832 * 12 10 9 15 15 H 1.48496 * 109.47549 * 89.99784 * 14 12 10 16 16 H 1.48507 * 109.46927 * 210.00111 * 14 12 10 17 17 H 1.48501 * 109.47067 * 329.99425 * 14 12 10 18 18 C 1.52995 * 117.49658 * 174.68148 * 9 8 7 19 19 C 1.52997 * 60.03059 * 252.49737 * 18 9 8 20 20 C 1.50695 * 109.47439 * 174.99976 * 5 4 3 21 21 C 1.34514 * 125.79361 * 259.99956 * 20 5 4 22 22 C 1.41378 * 106.84635 * 179.97438 * 21 20 5 23 23 C 1.34513 * 106.84099 * 0.02562 * 22 21 20 24 24 O 1.34307 * 125.78912 * 79.69235 * 20 5 4 25 25 H 1.08004 * 119.99462 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99913 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00415 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47184 * 5.00226 * 3 2 1 29 29 H 1.08997 * 109.47526 * 245.00221 * 3 2 1 30 30 H 1.08999 * 109.47131 * 60.00044 * 4 3 2 31 31 H 1.08996 * 109.47375 * 299.99625 * 4 3 2 32 32 H 1.00903 * 110.99580 * 31.04498 * 7 5 4 33 33 H 1.09000 * 109.47101 * 64.86623 * 8 7 5 34 34 H 1.09002 * 109.46877 * 304.86084 * 8 7 5 35 35 H 0.96997 * 120.00272 * 180.02562 * 13 12 10 36 36 H 1.08994 * 117.50283 * 0.02562 * 18 9 8 37 37 H 1.09001 * 117.49607 * 144.99415 * 18 9 8 38 38 H 1.09000 * 117.49423 * 107.50760 * 19 18 9 39 39 H 1.09005 * 117.49983 * 252.51904 * 19 18 9 40 40 H 1.08007 * 126.57562 * 359.96144 * 21 20 5 41 41 H 1.07997 * 126.58083 * 180.02562 * 22 21 20 42 42 H 1.07993 * 125.79418 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7995 2.6584 1.1820 6 1 3.0910 3.4867 1.1823 7 7 4.6441 2.7369 -0.0174 8 6 4.9181 4.1344 -0.3778 9 6 5.6953 4.1784 -1.6950 10 6 6.7535 3.1183 -1.8610 11 1 6.5454 2.2346 -2.4459 12 6 7.9871 3.2766 -1.2661 13 7 8.2749 4.3948 -0.6363 14 14 9.2499 1.9029 -1.3546 15 1 10.0887 2.0788 -2.5672 16 1 10.1120 1.9445 -0.1460 17 1 8.5529 0.5933 -1.4205 18 6 5.9704 5.5533 -2.3072 19 6 4.9379 4.6239 -2.9484 20 6 4.6659 2.7382 2.4125 21 6 4.3741 3.4152 3.5376 22 6 5.4557 3.2182 4.4265 23 6 6.3441 2.4331 3.7913 24 8 5.8579 2.1407 2.5739 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 3.7399 0.5066 1.0920 31 1 2.4773 1.2356 2.1130 32 1 4.2238 2.2403 -0.7887 33 1 5.5093 4.6033 0.4088 34 1 3.9764 4.6711 -0.4935 35 1 9.1430 4.5063 -0.2181 36 1 5.5982 6.4264 -1.7715 37 1 6.9169 5.6911 -2.8301 38 1 3.8860 4.8857 -2.8347 39 1 5.2052 4.1500 -3.8929 40 1 3.4842 3.9978 3.7257 41 1 5.5504 3.6209 5.4241 42 1 7.2862 2.0913 4.1938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353589601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = 40.468422 kcal Electronic energy + Delta-G solvation = -21653.401694 eV Core-core repulsion = 18600.682768 eV Total energy + Delta-G solvation = -3052.718926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.32089 -39.13975 -37.71051 -35.35171 -33.85073 -33.74559 -31.92378 -30.26916 -27.66709 -26.79326 -25.11302 -22.93814 -22.77855 -22.44980 -21.03979 -20.77068 -20.57014 -18.08407 -17.98586 -16.94847 -16.64596 -16.42690 -16.21355 -15.81755 -15.58071 -15.05087 -14.79775 -14.34138 -13.95585 -13.62261 -13.57368 -13.46492 -13.37517 -13.25260 -12.81047 -12.74234 -12.59484 -12.39700 -12.30061 -11.94677 -11.76204 -11.72002 -11.15476 -10.86215 -10.70889 -10.28506 -10.16853 -9.86608 -9.23627 -9.05991 -7.97493 -6.01922 0.96833 1.41067 1.44622 1.46033 1.53091 1.80286 2.34707 2.51331 3.28094 3.39347 3.56965 3.81551 3.88644 4.07238 4.23626 4.28231 4.36487 4.40288 4.48047 4.52103 4.54249 4.60487 4.73789 4.78922 4.88148 4.99336 5.01620 5.03068 5.07361 5.14351 5.22695 5.30489 5.33227 5.34110 5.63053 5.68633 5.74168 5.80902 5.90688 5.94532 6.28401 6.47908 6.60185 6.79137 6.99798 7.63453 9.11908 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.006987 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.601795 B = 4006.283111 C = 5042.103658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.093 4.093 4 C -0.100 4.100 5 C 0.161 3.839 6 H 0.076 0.924 7 N -0.666 5.666 8 C 0.129 3.871 9 C 0.018 3.982 10 C -0.469 4.469 11 H 0.048 0.952 12 C 0.033 3.967 13 N -0.910 5.910 14 Si 0.936 3.064 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.272 1.272 18 C -0.166 4.166 19 C -0.187 4.187 20 C 0.003 3.997 21 C -0.236 4.236 22 C -0.219 4.219 23 C -0.069 4.069 24 O -0.181 6.181 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.347 0.653 33 H 0.027 0.973 34 H 0.018 0.982 35 H 0.251 0.749 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -4.949 6.574 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.178 4.178 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.051 3.949 6 H 0.094 0.906 7 N -0.299 5.299 8 C 0.000 4.000 9 C 0.017 3.983 10 C -0.507 4.507 11 H 0.066 0.934 12 C -0.166 4.166 13 N -0.549 5.549 14 Si 0.763 3.237 15 H -0.207 1.207 16 H -0.219 1.219 17 H -0.196 1.196 18 C -0.204 4.204 19 C -0.224 4.224 20 C -0.049 4.049 21 C -0.255 4.255 22 C -0.238 4.238 23 C -0.136 4.136 24 O -0.076 6.076 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.169 0.831 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.361 -5.138 6.781 15.006 hybrid contribution 0.572 0.020 -0.073 0.577 sum -11.789 -5.117 6.708 14.497 Atomic orbital electron populations 1.24003 0.95586 1.02631 1.00640 1.22931 0.96373 0.98113 1.00368 1.20770 0.97807 0.96468 0.97987 1.21593 0.97239 0.95242 0.99713 1.20165 0.89596 0.99201 0.85977 0.90600 1.60095 1.48798 1.14439 1.06605 1.21154 0.94792 0.87665 0.96432 1.19045 0.96038 0.93966 0.89208 1.20350 0.96289 1.03607 1.30488 0.93412 1.25396 0.99554 0.96478 0.95152 1.70106 1.21840 1.25790 1.37139 0.85913 0.79669 0.81314 0.76755 1.20730 1.21919 1.19642 1.22382 0.98116 0.94615 1.05312 1.23071 0.95854 1.05231 0.98238 1.22950 0.85834 0.98098 0.98036 1.21821 1.02876 1.06509 0.94332 1.22043 0.95192 1.04031 1.02561 1.24641 1.01799 1.03475 0.83733 1.84135 1.31156 1.58823 1.33531 0.87392 0.88017 0.87316 0.90520 0.91253 0.91958 0.90015 0.83089 0.95426 0.96435 0.94033 0.91371 0.92576 0.88994 0.90492 0.82056 0.81322 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 14.32 67.78 0.97 -2.28 16 2 C -0.16 -3.18 9.52 25.65 0.24 -2.94 16 3 C -0.09 -2.06 5.49 29.85 0.16 -1.90 16 4 C -0.10 -2.60 4.77 30.60 0.15 -2.45 16 5 C 0.16 5.18 2.50 44.17 0.11 5.29 16 6 H 0.08 2.23 7.71 -2.39 -0.02 2.21 16 7 N -0.67 -26.30 5.64 -495.43 -2.80 -29.09 16 8 C 0.13 5.67 5.61 86.31 0.48 6.15 16 9 C 0.02 0.87 1.65 -52.90 -0.09 0.78 16 10 C -0.47 -25.51 8.14 25.60 0.21 -25.30 16 11 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 12 C 0.03 1.88 5.44 84.65 0.46 2.34 16 13 N -0.91 -53.90 12.87 21.44 0.28 -53.62 16 14 Si 0.94 45.77 29.54 68.60 2.03 47.79 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 17 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 18 C -0.17 -7.84 9.43 30.59 0.29 -7.55 16 19 C -0.19 -7.69 9.89 30.62 0.30 -7.39 16 20 C 0.00 0.09 5.98 24.83 0.15 0.24 16 21 C -0.24 -7.45 10.80 22.19 0.24 -7.21 16 22 C -0.22 -6.55 10.91 22.19 0.24 -6.31 16 23 C -0.07 -2.28 12.09 66.97 0.81 -1.47 16 24 O -0.18 -7.42 10.65 -2.60 -0.03 -7.44 16 25 H 0.11 1.52 8.06 -2.91 -0.02 1.50 16 26 H 0.10 1.57 7.84 -2.91 -0.02 1.55 16 27 H 0.11 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.08 1.53 7.79 -2.39 -0.02 1.51 16 29 H 0.07 1.69 6.43 -2.39 -0.02 1.68 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.35 12.81 6.41 -89.69 -0.57 12.23 16 33 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.09 3.22 8.08 -2.39 -0.02 3.20 16 39 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 41 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.22 5.59 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -65.05 353.76 4.62 -60.43 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.41 Total: 31.93 kcal Atomic # 6 Polarization: -54.73 SS G_CDS: 4.73 Total: -49.99 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.52 Total: -82.71 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.03 Total: -7.44 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -65.05 4.62 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353589601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.899 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds