Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 C 1.53003 * 109.46989 * 240.00202 * 2 1 3 5 5 C 1.53004 * 109.46850 * 294.08511 * 4 2 1 6 6 H 1.09003 * 109.47167 * 55.38952 * 5 4 2 7 7 C 1.50700 * 109.46656 * 175.38828 * 5 4 2 8 8 O 1.21301 * 119.99867 * 107.17642 * 7 5 4 9 9 N 1.34777 * 119.99988 * 287.16781 * 7 5 4 10 10 C 1.46500 * 120.00104 * 5.14364 * 9 7 5 11 11 C 1.37098 * 119.99574 * 185.14019 * 9 7 5 12 12 H 1.08002 * 120.00442 * 4.46896 * 11 9 7 13 13 C 1.38947 * 119.99771 * 184.46810 * 11 9 7 14 14 N 1.31419 * 120.00019 * 5.83227 * 13 11 9 15 15 Si 1.86808 * 120.00228 * 185.83964 * 13 11 9 16 16 H 1.48496 * 109.46889 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47089 * 119.99534 * 15 13 11 18 18 H 1.48497 * 109.46980 * 239.99740 * 15 13 11 19 19 C 1.50698 * 109.47109 * 295.38941 * 5 4 2 20 20 C 1.38237 * 119.99934 * 299.72763 * 19 5 4 21 21 C 1.38238 * 119.99991 * 179.79038 * 20 19 5 22 22 C 1.38239 * 119.99577 * 0.44278 * 21 20 19 23 23 C 1.38228 * 120.00101 * 359.80582 * 22 21 20 24 24 C 1.38230 * 120.00233 * 120.00538 * 19 5 4 25 25 H 1.09002 * 109.47204 * 175.79190 * 1 2 3 26 26 H 1.09006 * 109.47165 * 295.78500 * 1 2 3 27 27 H 1.09000 * 109.47447 * 55.78553 * 1 2 3 28 28 H 1.09004 * 109.47211 * 120.00047 * 2 1 3 29 29 H 1.08998 * 109.47451 * 60.00131 * 3 2 1 30 30 H 1.09003 * 109.47328 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47107 * 300.00111 * 3 2 1 32 32 H 1.08994 * 109.47168 * 54.08474 * 4 2 1 33 33 H 1.09000 * 109.47254 * 174.08909 * 4 2 1 34 34 H 1.08998 * 109.46812 * 359.82680 * 10 9 7 35 35 H 1.09007 * 109.46754 * 119.82595 * 10 9 7 36 36 H 1.08995 * 109.46738 * 239.82461 * 10 9 7 37 37 H 0.97003 * 119.99623 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.99731 * 359.97438 * 20 19 5 39 39 H 1.07993 * 120.00298 * 180.27174 * 21 20 19 40 40 H 1.08001 * 119.99424 * 179.83350 * 22 21 20 41 41 H 1.08006 * 119.99991 * 180.02562 * 23 22 21 42 42 H 1.08008 * 119.99835 * 359.97317 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6549 -2.2003 -1.1772 6 1 0.5771 -2.2889 -1.0403 7 6 2.0568 -2.8869 -2.4570 8 8 3.0033 -3.6454 -2.4669 9 7 1.3646 -2.6582 -3.5906 10 6 0.2937 -1.6586 -3.6059 11 6 1.6627 -3.3610 -4.7293 12 1 2.4020 -4.1478 -4.7004 13 6 1.0135 -3.0612 -5.9207 14 7 0.1996 -2.0313 -5.9844 15 14 1.2976 -4.1219 -7.4319 16 1 2.2516 -5.2105 -7.1003 17 1 0.0078 -4.7108 -7.8729 18 1 1.8599 -3.2873 -8.5239 19 6 2.3637 -2.8478 -0.0156 20 6 3.7453 -2.8647 0.0286 21 6 4.3955 -3.4548 1.0963 22 6 3.6641 -4.0362 2.1152 23 6 2.2827 -4.0238 2.0683 24 6 1.6325 -3.4300 1.0028 25 1 -0.3634 -1.0249 -0.0754 26 1 -0.3634 0.4471 0.9254 27 1 -0.3634 0.5778 -0.8498 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.5927 -0.2722 -2.1360 33 1 3.1248 -0.6305 -1.3038 34 1 0.2019 -1.2094 -2.6170 35 1 0.5297 -0.8845 -4.3362 36 1 -0.6471 -2.1382 -3.8759 37 1 -0.2538 -1.8222 -6.8160 38 1 4.3166 -2.4141 -0.7695 39 1 5.4748 -3.4642 1.1330 40 1 4.1722 -4.4997 2.9479 41 1 1.7113 -4.4777 2.8646 42 1 0.5531 -3.4204 0.9662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353920401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = -12.163227 kcal Electronic energy + Delta-G solvation = -22107.373451 eV Core-core repulsion = 19052.372246 eV Total energy + Delta-G solvation = -3055.001206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79398 -37.94141 -36.23765 -34.70620 -32.25835 -31.42705 -30.50153 -28.53137 -27.01815 -26.22846 -24.88496 -23.56076 -22.16429 -21.42599 -19.49679 -18.67292 -16.89596 -16.44143 -16.07656 -15.17434 -14.85392 -14.63838 -14.21430 -14.03643 -13.87641 -13.40642 -13.19116 -12.98688 -12.85075 -12.32820 -12.15828 -12.01076 -11.81731 -11.67377 -11.34490 -11.28693 -10.99672 -10.86007 -10.77146 -10.60298 -10.48202 -10.32156 -10.18112 -10.12122 -10.01292 -9.03915 -8.58286 -8.31851 -8.11723 -7.81020 -6.19322 -3.78125 1.76465 1.84354 3.15293 3.25698 3.33198 3.90170 4.09812 4.24297 4.86831 4.99161 5.11026 5.16072 5.25305 5.28623 5.30089 5.36301 5.49873 5.67358 5.74985 5.79922 5.86105 5.95374 5.95464 5.97902 6.03667 6.10567 6.21181 6.28365 6.33895 6.42244 6.45475 6.48053 6.60414 6.67746 6.83689 6.91219 7.09068 7.15484 7.41381 7.45144 7.60273 8.10553 8.52762 9.22641 9.49227 10.02720 10.72912 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005943 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.810215 B = 4710.207501 C = 5707.783686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.062 4.062 6 H 0.088 0.912 7 C 0.445 3.555 8 O -0.588 6.588 9 N -0.448 5.448 10 C 0.105 3.895 11 C -0.296 4.296 12 H 0.103 0.897 13 C 0.025 3.975 14 N -0.890 5.890 15 Si 0.929 3.071 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.044 4.044 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 4.546 12.786 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.143 4.143 5 C -0.083 4.083 6 H 0.106 0.894 7 C 0.233 3.767 8 O -0.473 6.473 9 N -0.166 5.166 10 C -0.038 4.038 11 C -0.424 4.424 12 H 0.121 0.879 13 C -0.176 4.176 14 N -0.532 5.532 15 Si 0.756 3.244 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.045 4.045 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.477 4.260 12.582 13.292 hybrid contribution -0.140 -0.485 -0.918 1.048 sum 0.337 3.774 11.664 12.264 Atomic orbital electron populations 1.21905 0.95441 1.01954 1.01317 1.21119 0.95791 0.95798 0.98656 1.21822 1.00833 0.96207 1.01383 1.21772 1.01483 0.92670 0.98409 1.20259 1.00200 0.95263 0.92626 0.89375 1.19693 0.85847 0.86672 0.84528 1.90520 1.30163 1.41145 1.85464 1.43673 1.30017 1.34284 1.08582 1.21995 0.91000 0.93016 0.97824 1.19858 1.22039 1.14737 0.85759 0.87890 1.25289 0.96398 0.96840 0.99117 1.70138 1.29780 1.26233 1.27016 0.85809 0.78163 0.79692 0.80761 1.19321 1.20724 1.20760 1.19444 0.93764 0.97140 0.94104 1.20980 0.94105 0.97719 0.96427 1.21078 0.99446 0.99415 0.94693 1.20994 0.94194 1.00823 0.98936 1.20950 0.94550 1.00772 0.98502 1.20985 0.99369 0.98911 0.94426 0.92420 0.93200 0.92490 0.91127 0.93112 0.92908 0.92662 0.90295 0.91658 0.95049 0.89654 0.92945 0.92553 0.86070 0.86719 0.86922 0.86780 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.01 37.16 0.33 -1.46 16 2 C -0.10 -1.25 2.81 -90.62 -0.25 -1.50 16 3 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 4 C -0.11 -1.71 3.58 -26.73 -0.10 -1.80 16 5 C -0.06 -1.15 1.39 -92.92 -0.13 -1.28 16 6 H 0.09 1.55 5.23 -51.93 -0.27 1.27 16 7 C 0.45 10.79 6.82 -10.99 -0.07 10.71 16 8 O -0.59 -16.18 14.29 5.54 0.08 -16.10 16 9 N -0.45 -11.47 3.03 -122.19 -0.37 -11.84 16 10 C 0.10 2.36 7.83 59.85 0.47 2.83 16 11 C -0.30 -8.31 9.56 -14.93 -0.14 -8.45 16 12 H 0.10 3.05 7.20 -52.49 -0.38 2.68 16 13 C 0.02 0.65 5.43 -17.47 -0.09 0.56 16 14 N -0.89 -23.39 9.53 55.50 0.53 -22.86 16 15 Si 0.93 21.02 29.56 -169.99 -5.02 15.99 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.04 -0.78 3.40 -104.63 -0.36 -1.14 16 20 C -0.07 -1.32 7.78 -39.58 -0.31 -1.63 16 21 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 23 C -0.13 -1.83 10.05 -39.59 -0.40 -2.22 16 24 C -0.12 -1.86 9.67 -39.59 -0.38 -2.25 16 25 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.96 7.19 -51.93 -0.37 0.59 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.34 5.84 -51.93 -0.30 1.04 16 33 H 0.06 1.09 7.25 -51.93 -0.38 0.72 16 34 H 0.03 0.58 4.30 -51.93 -0.22 0.36 16 35 H 0.09 2.06 6.58 -51.93 -0.34 1.72 16 36 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 37 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.12 2.30 7.17 -52.49 -0.38 1.92 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.12 1.60 7.95 -52.48 -0.42 1.19 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -30.30 330.08 -8.00 -38.29 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.30 Total: 5.11 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.89 Total: -13.57 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.16 Total: -34.70 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.08 Total: -16.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.30 -8.00 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353920401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.129 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds