Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 C 1.53003 * 109.46989 * 240.00202 * 2 1 3 5 5 C 1.53004 * 109.46850 * 294.08511 * 4 2 1 6 6 H 1.09003 * 109.47167 * 55.38952 * 5 4 2 7 7 C 1.50700 * 109.46656 * 175.38828 * 5 4 2 8 8 O 1.21301 * 119.99867 * 107.17642 * 7 5 4 9 9 N 1.34777 * 119.99988 * 287.16781 * 7 5 4 10 10 C 1.46500 * 120.00104 * 5.14364 * 9 7 5 11 11 C 1.37098 * 119.99574 * 185.14019 * 9 7 5 12 12 H 1.08002 * 120.00442 * 4.46896 * 11 9 7 13 13 C 1.38947 * 119.99771 * 184.46810 * 11 9 7 14 14 N 1.31419 * 120.00019 * 5.83227 * 13 11 9 15 15 Si 1.86808 * 120.00228 * 185.83964 * 13 11 9 16 16 H 1.48496 * 109.46889 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47089 * 119.99534 * 15 13 11 18 18 H 1.48497 * 109.46980 * 239.99740 * 15 13 11 19 19 C 1.50698 * 109.47109 * 295.38941 * 5 4 2 20 20 C 1.38237 * 119.99934 * 299.72763 * 19 5 4 21 21 C 1.38238 * 119.99991 * 179.79038 * 20 19 5 22 22 C 1.38239 * 119.99577 * 0.44278 * 21 20 19 23 23 C 1.38228 * 120.00101 * 359.80582 * 22 21 20 24 24 C 1.38230 * 120.00233 * 120.00538 * 19 5 4 25 25 H 1.09002 * 109.47204 * 175.79190 * 1 2 3 26 26 H 1.09006 * 109.47165 * 295.78500 * 1 2 3 27 27 H 1.09000 * 109.47447 * 55.78553 * 1 2 3 28 28 H 1.09004 * 109.47211 * 120.00047 * 2 1 3 29 29 H 1.08998 * 109.47451 * 60.00131 * 3 2 1 30 30 H 1.09003 * 109.47328 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47107 * 300.00111 * 3 2 1 32 32 H 1.08994 * 109.47168 * 54.08474 * 4 2 1 33 33 H 1.09000 * 109.47254 * 174.08909 * 4 2 1 34 34 H 1.08998 * 109.46812 * 359.82680 * 10 9 7 35 35 H 1.09007 * 109.46754 * 119.82595 * 10 9 7 36 36 H 1.08995 * 109.46738 * 239.82461 * 10 9 7 37 37 H 0.97003 * 119.99623 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.99731 * 359.97438 * 20 19 5 39 39 H 1.07993 * 120.00298 * 180.27174 * 21 20 19 40 40 H 1.08001 * 119.99424 * 179.83350 * 22 21 20 41 41 H 1.08006 * 119.99991 * 180.02562 * 23 22 21 42 42 H 1.08008 * 119.99835 * 359.97317 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6549 -2.2003 -1.1772 6 1 0.5771 -2.2889 -1.0403 7 6 2.0568 -2.8869 -2.4570 8 8 3.0033 -3.6454 -2.4669 9 7 1.3646 -2.6582 -3.5906 10 6 0.2937 -1.6586 -3.6059 11 6 1.6627 -3.3610 -4.7293 12 1 2.4020 -4.1478 -4.7004 13 6 1.0135 -3.0612 -5.9207 14 7 0.1996 -2.0313 -5.9844 15 14 1.2976 -4.1219 -7.4319 16 1 2.2516 -5.2105 -7.1003 17 1 0.0078 -4.7108 -7.8729 18 1 1.8599 -3.2873 -8.5239 19 6 2.3637 -2.8478 -0.0156 20 6 3.7453 -2.8647 0.0286 21 6 4.3955 -3.4548 1.0963 22 6 3.6641 -4.0362 2.1152 23 6 2.2827 -4.0238 2.0683 24 6 1.6325 -3.4300 1.0028 25 1 -0.3634 -1.0249 -0.0754 26 1 -0.3634 0.4471 0.9254 27 1 -0.3634 0.5778 -0.8498 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.5927 -0.2722 -2.1360 33 1 3.1248 -0.6305 -1.3038 34 1 0.2019 -1.2094 -2.6170 35 1 0.5297 -0.8845 -4.3362 36 1 -0.6471 -2.1382 -3.8759 37 1 -0.2538 -1.8222 -6.8160 38 1 4.3166 -2.4141 -0.7695 39 1 5.4748 -3.4642 1.1330 40 1 4.1722 -4.4997 2.9479 41 1 1.7113 -4.4777 2.8646 42 1 0.5531 -3.4204 0.9662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353920401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = -27.711216 kcal Electronic energy + Delta-G solvation = -22108.047663 eV Core-core repulsion = 19052.372246 eV Total energy + Delta-G solvation = -3055.675417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32254 -39.48492 -37.49398 -36.70277 -33.78055 -33.21735 -31.69358 -29.88898 -28.14047 -27.94536 -26.62992 -25.09767 -23.37624 -22.79496 -20.72405 -20.29434 -18.94058 -18.01611 -17.50846 -16.58215 -16.43462 -16.16383 -15.68157 -15.61644 -15.36548 -14.81249 -14.44972 -14.37822 -14.15097 -13.82342 -13.60776 -13.44569 -13.13053 -12.96995 -12.92075 -12.81366 -12.59651 -12.44573 -12.18426 -12.14335 -11.91427 -11.76960 -11.66090 -11.39702 -11.32994 -11.03872 -10.24536 -9.85262 -9.66161 -9.48249 -8.21954 -5.90628 0.55121 0.63456 1.33502 1.38445 1.52339 2.02779 2.25155 2.90631 3.10808 3.22871 3.71006 3.84792 4.05147 4.10934 4.15688 4.26285 4.33011 4.34683 4.40044 4.58916 4.64160 4.72726 4.79916 4.85846 4.88218 4.94160 5.06733 5.11586 5.14010 5.19573 5.23096 5.27726 5.35481 5.43704 5.52011 5.54000 5.58510 5.66347 5.70824 5.87686 6.05134 6.23823 6.49696 7.17835 7.51232 8.05441 8.67356 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005943 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.810215 B = 4710.207501 C = 5707.783686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.099 4.099 5 C -0.048 4.048 6 H 0.101 0.899 7 C 0.436 3.564 8 O -0.629 6.629 9 N -0.464 5.464 10 C 0.120 3.880 11 C -0.338 4.338 12 H 0.073 0.927 13 C -0.006 4.006 14 N -0.897 5.897 15 Si 0.991 3.009 16 H -0.278 1.278 17 H -0.267 1.267 18 H -0.271 1.271 19 C -0.066 4.066 20 C -0.100 4.100 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 4.759 14.687 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.069 4.069 6 H 0.118 0.882 7 C 0.226 3.774 8 O -0.517 6.517 9 N -0.182 5.182 10 C -0.023 4.023 11 C -0.466 4.466 12 H 0.091 0.909 13 C -0.206 4.206 14 N -0.538 5.538 15 Si 0.814 3.186 16 H -0.203 1.203 17 H -0.192 1.192 18 H -0.196 1.196 19 C -0.067 4.067 20 C -0.119 4.119 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.606 4.506 14.489 15.186 hybrid contribution 0.242 -0.573 -1.460 1.587 sum -0.364 3.933 13.029 13.614 Atomic orbital electron populations 1.21913 0.94251 1.01893 1.02540 1.21038 0.96673 0.96244 0.96479 1.21808 1.00690 0.95162 1.02391 1.21723 1.00619 0.91510 0.99858 1.20161 1.00831 0.96033 0.89870 0.88158 1.20770 0.84802 0.85940 0.85914 1.90475 1.31844 1.42871 1.86464 1.43923 1.30918 1.34796 1.08585 1.21842 0.89292 0.91673 0.99468 1.19759 1.23279 1.15809 0.87798 0.90913 1.26016 0.95687 0.97802 1.01078 1.70236 1.29276 1.26343 1.27942 0.84915 0.78316 0.77940 0.77393 1.20316 1.19235 1.19594 1.19452 0.93842 0.98751 0.94643 1.20921 0.94445 0.99465 0.97021 1.21336 1.00618 0.99034 0.94382 1.21419 0.94444 0.99514 0.99052 1.21386 0.94932 0.99459 0.98521 1.21243 1.00310 0.98557 0.94335 0.92915 0.91038 0.92436 0.91247 0.91072 0.93251 0.92649 0.91391 0.93159 0.91335 0.91407 0.94377 0.91897 0.88893 0.85033 0.83455 0.83300 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.01 71.98 0.65 -2.60 16 2 C -0.09 -2.13 2.81 -10.79 -0.03 -2.16 16 3 C -0.14 -3.07 9.19 71.98 0.66 -2.41 16 4 C -0.10 -3.25 3.58 30.60 0.11 -3.14 16 5 C -0.05 -1.80 1.39 -12.29 -0.02 -1.81 16 6 H 0.10 3.47 5.23 -2.39 -0.01 3.46 16 7 C 0.44 22.11 6.82 87.66 0.60 22.71 16 8 O -0.63 -36.68 14.29 -3.10 -0.04 -36.73 16 9 N -0.46 -24.77 3.03 -658.88 -1.99 -26.77 16 10 C 0.12 5.50 7.83 127.77 1.00 6.50 16 11 C -0.34 -19.86 9.56 84.04 0.80 -19.06 16 12 H 0.07 4.60 7.20 -2.91 -0.02 4.58 16 13 C -0.01 -0.30 5.43 84.92 0.46 0.16 16 14 N -0.90 -47.49 9.53 21.66 0.21 -47.28 16 15 Si 0.99 43.58 29.56 68.60 2.03 45.61 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 C -0.07 -2.36 3.40 -19.87 -0.07 -2.43 16 20 C -0.10 -3.67 7.78 22.27 0.17 -3.50 16 21 C -0.14 -4.06 10.05 22.27 0.22 -3.84 16 22 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 23 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 24 C -0.13 -3.73 9.67 22.27 0.22 -3.51 16 25 H 0.05 1.20 6.32 -2.39 -0.02 1.18 16 26 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.78 7.19 -2.38 -0.02 1.76 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 2.34 5.84 -2.39 -0.01 2.33 16 33 H 0.05 1.77 7.25 -2.39 -0.02 1.76 16 34 H 0.07 2.57 4.30 -2.39 -0.01 2.55 16 35 H 0.07 3.34 6.58 -2.38 -0.02 3.32 16 36 H 0.04 1.82 7.51 -2.39 -0.02 1.80 16 37 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 38 H 0.09 3.82 7.17 -2.91 -0.02 3.80 16 39 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.13 3.35 7.95 -2.91 -0.02 3.33 16 Total: -1.00 -68.52 330.08 6.42 -62.09 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.00 Total: 23.98 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 5.23 Total: -20.91 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.79 Total: -74.05 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.04 Total: -36.73 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.52 6.42 -62.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353920401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.382 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds