Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00016 * 0.50732 * 7 6 5 9 9 C 1.50696 * 120.00209 * 179.72225 * 8 7 6 10 10 C 1.50701 * 109.47191 * 270.02548 * 9 8 7 11 11 O 1.21275 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99886 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00299 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47605 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99767 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00293 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99897 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47117 * 59.99714 * 18 16 14 20 20 H 1.48502 * 109.47139 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46886 * 299.99582 * 18 16 14 22 22 C 1.38238 * 120.00063 * 359.74632 * 8 7 6 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 8 7 24 24 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 25 25 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 26 26 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 28 28 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 29 29 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 30 30 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 31 31 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 32 32 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 33 33 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.99924 * 180.23621 * 7 6 5 35 35 H 1.09003 * 109.47159 * 30.02324 * 9 8 7 36 36 H 1.08997 * 109.47406 * 150.02394 * 9 8 7 37 37 H 0.97001 * 120.00171 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46884 * 300.00056 * 13 12 10 39 39 H 1.09001 * 109.47534 * 59.99174 * 13 12 10 40 40 H 0.96995 * 120.00102 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00578 * 179.97438 * 22 8 7 42 42 H 1.07999 * 120.00165 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7649 4.8173 -1.1979 8 6 4.9947 5.4696 -0.0010 9 6 5.4980 6.8901 -0.0016 10 6 7.0050 6.8891 -0.0010 11 8 7.6107 5.8385 0.0003 12 7 7.6796 8.0559 -0.0018 13 6 9.1445 8.0550 -0.0018 14 6 9.6478 9.4755 -0.0034 15 1 8.9465 10.2968 -0.0049 16 6 11.0035 9.7266 -0.0032 17 7 11.8575 8.7264 -0.0010 18 14 11.6273 11.4873 -0.0060 19 1 11.1320 12.1898 1.2050 20 1 13.1123 11.4864 -0.0046 21 1 11.1334 12.1855 -1.2201 22 6 4.7634 4.8188 1.1964 23 6 4.3027 3.5155 1.1970 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 4.1329 3.0013 -2.1325 34 1 4.9458 5.3257 -2.1334 35 1 5.1354 7.4037 -0.8920 36 1 5.1346 7.4046 0.8879 37 1 7.1951 8.8962 -0.0032 38 1 9.5075 7.5416 0.8887 39 1 9.5077 7.5402 -0.8913 40 1 12.8112 8.9030 -0.0004 41 1 4.9433 5.3282 2.1316 42 1 4.1224 3.0069 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355356299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -71.282593 kcal Electronic energy + Delta-G solvation = -19828.165687 eV Core-core repulsion = 16770.600873 eV Total energy + Delta-G solvation = -3057.564814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95009 -39.83652 -36.78515 -36.10215 -34.38434 -34.03355 -31.78228 -31.25332 -29.39944 -27.60939 -25.02439 -24.04193 -23.61517 -22.07047 -21.66648 -21.12972 -18.95531 -17.46592 -17.36578 -16.92597 -16.74394 -16.23171 -16.11857 -15.65959 -15.59987 -14.91862 -14.61807 -14.28603 -14.14635 -14.09146 -13.99355 -13.73122 -13.49037 -13.00162 -12.87153 -12.86825 -12.65504 -12.33143 -12.22962 -12.14476 -11.96033 -11.75526 -11.51918 -11.46539 -11.36805 -10.80539 -10.79748 -9.82328 -9.76247 -9.36834 -8.29467 -6.46591 0.42760 0.55865 1.42698 1.47023 1.55254 1.79824 2.32546 2.56808 3.00514 3.05036 3.71831 3.87779 3.90190 4.11352 4.15067 4.22083 4.24711 4.34422 4.39046 4.56563 4.58896 4.66452 4.79500 4.81432 4.85668 4.99456 4.99783 5.10060 5.16827 5.22182 5.23671 5.24390 5.33312 5.41010 5.48909 5.52386 5.53984 5.70475 5.72943 5.76150 5.84557 6.17172 6.64725 6.93193 7.23069 7.52462 8.82525 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.062785 B = 0.002440 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.861295 B =11471.159742 C =11586.010222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.077 4.077 5 C -0.091 4.091 6 C -0.127 4.127 7 C -0.119 4.119 8 C -0.083 4.083 9 C -0.090 4.090 10 C 0.496 3.504 11 O -0.599 6.599 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.557 4.557 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.286 1.286 21 H -0.261 1.261 22 C -0.119 4.119 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.410 0.590 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.269 0.731 41 H 0.125 0.875 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.357 -10.556 -0.005 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.091 4.091 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.084 4.084 9 C -0.130 4.130 10 C 0.284 3.716 11 O -0.480 6.480 12 N -0.359 5.359 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.137 4.137 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.245 0.755 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.143 0.857 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.734 -11.329 -0.004 25.401 hybrid contribution 0.895 0.988 -0.001 1.333 sum -21.839 -10.340 -0.005 24.164 Atomic orbital electron populations 1.21778 0.95511 1.01933 1.01836 1.21543 0.96183 0.96120 1.02336 1.21542 0.93471 0.97327 1.02145 1.20631 0.96243 0.91173 1.03329 1.20153 0.98862 0.97165 0.92898 1.21218 1.00218 0.94529 0.98517 1.21208 0.99179 0.95684 0.97671 1.19503 0.99227 0.95582 0.94062 1.20711 0.88892 0.95841 1.07514 1.21419 0.91397 0.83237 0.75566 1.90654 1.72009 1.33157 1.52220 1.46216 1.08105 1.08585 1.73036 1.18510 0.76456 0.96810 0.93864 1.21610 0.93003 0.91927 1.52959 0.89662 1.26108 0.96876 1.02953 0.93845 1.70140 1.02996 1.33967 1.49928 0.85182 0.76788 0.77550 0.79537 1.18597 1.21143 1.18588 1.21209 0.99156 0.95717 0.97664 1.21218 1.00207 0.94533 0.98520 0.92790 0.92785 0.92205 0.91730 0.91732 0.92144 0.92142 0.90609 0.90601 0.84587 0.85668 0.85504 0.85506 0.75461 0.99728 0.99735 0.92264 0.85666 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.48 5.93 30.59 0.18 -1.29 16 3 C -0.11 -1.54 5.20 30.59 0.16 -1.38 16 4 C -0.08 -1.30 5.35 29.85 0.16 -1.14 16 5 C -0.09 -2.10 5.13 -19.86 -0.10 -2.20 16 6 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 7 C -0.12 -3.29 9.70 22.27 0.22 -3.08 16 8 C -0.08 -2.41 4.37 -19.87 -0.09 -2.50 16 9 C -0.09 -2.44 5.83 29.10 0.17 -2.27 16 10 C 0.50 20.12 7.82 87.66 0.69 20.80 16 11 O -0.60 -30.69 16.03 -3.01 -0.05 -30.74 16 12 N -0.71 -30.19 5.55 -466.80 -2.59 -32.78 16 13 C 0.27 14.90 5.43 85.63 0.46 15.36 16 14 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 15 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 16 C 0.00 0.09 5.46 84.65 0.46 0.56 16 17 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 18 Si 0.99 42.48 29.54 68.60 2.03 44.50 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 20 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 C -0.12 -3.29 9.70 22.27 0.22 -3.08 16 23 C -0.13 -3.11 9.70 22.27 0.22 -2.89 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 32 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.13 2.67 8.09 -2.39 -0.02 2.65 16 36 H 0.13 2.67 8.09 -2.39 -0.02 2.65 16 37 H 0.41 14.09 8.32 -92.71 -0.77 13.32 16 38 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -73.90 356.32 3.79 -70.11 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.21 Total: 22.82 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.91 Total: -17.29 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -2.30 Total: -89.40 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -73.90 3.79 -70.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355356299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.177 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds