Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.53000 * 109.46630 * 240.00456 * 2 1 3 5 5 C 1.50696 * 109.47544 * 60.00359 * 4 2 1 6 6 H 1.08001 * 119.99804 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00346 * 180.02562 * 5 4 2 8 8 N 1.31524 * 120.00238 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00112 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47257 * 90.00161 * 9 7 5 11 11 H 1.48503 * 109.47244 * 210.00672 * 9 7 5 12 12 H 1.48508 * 109.47019 * 330.00376 * 9 7 5 13 13 C 1.52999 * 109.47213 * 120.00567 * 2 1 3 14 14 N 1.46503 * 109.46693 * 299.99787 * 13 2 1 15 15 C 1.39672 * 119.99663 * 180.02562 * 14 13 2 16 16 C 1.39084 * 120.08779 * 0.02562 * 15 14 13 17 17 C 1.38113 * 119.68256 * 179.97438 * 16 15 14 18 18 C 1.38022 * 120.43040 * 0.18333 * 17 16 15 19 19 C 1.39319 * 120.39792 * 0.03710 * 18 17 16 20 20 C 1.38354 * 120.08830 * 179.97438 * 15 14 13 21 21 C 1.51933 * 132.11263 * 358.87487 * 20 15 14 22 22 C 1.54707 * 101.77920 * 195.82456 * 21 20 15 23 23 O 1.36152 * 129.85396 * 179.52154 * 19 18 17 24 24 H 1.09004 * 109.46722 * 299.99493 * 1 2 3 25 25 H 1.09003 * 109.47004 * 59.99729 * 1 2 3 26 26 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47513 * 300.00582 * 3 2 1 29 29 H 1.09004 * 109.46998 * 60.00675 * 3 2 1 30 30 H 1.09006 * 109.46935 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47583 * 299.99393 * 4 2 1 32 32 H 0.96995 * 119.99686 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46903 * 180.02562 * 13 2 1 34 34 H 1.08995 * 109.46887 * 59.99843 * 13 2 1 35 35 H 0.96994 * 120.00576 * 0.02562 * 14 13 2 36 36 H 1.08005 * 120.15809 * 359.94563 * 16 15 14 37 37 H 1.07990 * 119.78647 * 180.21412 * 17 16 15 38 38 H 1.08000 * 119.80034 * 180.02562 * 18 17 16 39 39 H 1.09000 * 110.89618 * 77.76085 * 21 20 15 40 40 H 1.09002 * 111.10637 * 313.98156 * 21 20 15 41 41 H 1.09002 * 110.75211 * 216.53535 * 22 21 20 42 42 H 1.09002 * 110.74833 * 93.36191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8702 -0.4820 -3.7320 8 7 1.4315 0.1379 -4.8058 9 14 2.9440 -2.0008 -3.9036 10 1 2.0854 -3.2115 -3.9485 11 1 3.7356 -1.9084 -5.1567 12 1 3.8649 -2.0898 -2.7419 13 6 2.0401 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8896 -0.5077 3.7139 16 6 2.6900 -1.6378 3.8435 17 6 3.0194 -2.1019 5.1019 18 6 2.5566 -1.4539 6.2293 19 6 1.7504 -0.3238 6.1118 20 6 1.4299 0.1433 4.8448 21 6 0.5775 1.3875 5.0285 22 6 0.8277 1.7247 6.5175 23 8 1.1869 0.4504 7.0797 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2494 32 1 1.6658 -0.1935 -5.6868 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2490 35 1 0.9938 0.7577 2.3565 36 1 3.0518 -2.1502 2.9643 37 1 3.6436 -2.9771 5.2045 38 1 2.8207 -1.8254 7.2084 39 1 -0.4751 1.1673 4.8504 40 1 0.9195 2.1964 4.3830 41 1 -0.0791 2.1099 6.9839 42 1 1.6457 2.4378 6.6198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355568149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = -20.124709 kcal Electronic energy + Delta-G solvation = -21226.428648 eV Core-core repulsion = 18171.082207 eV Total energy + Delta-G solvation = -3055.346441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04520 -38.52568 -37.01367 -34.26587 -32.49300 -31.88171 -29.47899 -28.66486 -27.50568 -26.58314 -25.87563 -23.45812 -22.70246 -21.62468 -20.97375 -18.33571 -17.55608 -17.01202 -16.66129 -16.26740 -15.68573 -15.15011 -14.63504 -14.49780 -14.01864 -13.56912 -13.31398 -13.22256 -13.10446 -12.84662 -12.79169 -12.36559 -12.31433 -11.81658 -11.48571 -11.39615 -11.20120 -11.13262 -11.01485 -10.91031 -10.64905 -10.49706 -10.06406 -9.80993 -9.71299 -9.55766 -9.03375 -8.57255 -8.18517 -7.27448 -6.07615 -4.05162 1.40941 1.68457 3.24339 3.27602 3.35919 3.38192 3.61163 3.85866 4.41669 4.42548 4.57244 4.85908 5.08043 5.13977 5.24578 5.26555 5.30399 5.43202 5.46659 5.54818 5.61173 5.62652 5.70430 5.87586 6.04519 6.06620 6.10866 6.27147 6.28349 6.38963 6.52262 6.55148 6.56378 6.62182 6.83883 6.97751 7.00934 7.14478 7.16135 7.31753 7.47362 7.74937 7.88016 8.49518 8.96462 9.54742 11.05216 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031662 B = 0.003844 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.115107 B = 7281.785510 C = 7952.013449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.127 4.127 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.128 3.872 14 N -0.733 5.733 15 C 0.274 3.726 16 C -0.226 4.226 17 C -0.038 4.038 18 C -0.206 4.206 19 C 0.148 3.852 20 C -0.265 4.265 21 C -0.097 4.097 22 C 0.054 3.946 23 O -0.309 6.309 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.399 0.601 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 0.360 20.421 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.062 4.062 3 C -0.185 4.185 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.004 3.996 14 N -0.360 5.360 15 C 0.167 3.833 16 C -0.249 4.249 17 C -0.057 4.057 18 C -0.227 4.227 19 C 0.102 3.898 20 C -0.271 4.271 21 C -0.135 4.135 22 C -0.021 4.021 23 O -0.223 6.223 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.235 0.765 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.609 0.219 20.262 20.272 hybrid contribution 0.312 -0.431 -0.495 0.726 sum 0.921 -0.212 19.767 19.790 Atomic orbital electron populations 1.21762 0.94833 1.01208 1.00709 1.20651 0.95809 0.95900 0.93819 1.21753 1.00361 0.95656 1.00697 1.19588 0.96189 0.95439 0.92692 1.21076 1.31876 1.13379 0.88643 0.90449 1.25006 0.95705 0.96765 0.95972 1.69904 1.45878 1.40570 0.97900 0.86847 0.81276 0.83904 0.77645 1.20369 1.21476 1.19058 1.21647 0.98202 0.95850 0.83853 1.45016 1.56204 1.32549 1.02255 1.17077 0.90957 0.91231 0.84028 1.20620 1.06714 0.99389 0.98173 1.20563 0.96413 0.97659 0.91080 1.19912 1.04823 0.98620 0.99314 1.19253 0.91804 0.92426 0.86294 1.20082 1.10601 1.03653 0.92749 1.21605 0.99885 0.95603 0.96380 1.23766 1.01076 0.84491 0.92770 1.86809 1.74949 1.25650 1.34890 0.95037 0.90976 0.93454 0.93457 0.90966 0.95066 0.96433 0.96877 0.92767 0.92459 0.92453 0.76496 0.85512 0.85531 0.86275 0.89983 0.89859 0.88004 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.91 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.54 8.20 -34.44 -0.28 -13.82 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.88 21.09 27.47 -169.99 -4.67 16.43 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.13 1.98 3.81 -4.04 -0.02 1.96 16 14 N -0.73 -10.17 5.13 -58.74 -0.30 -10.47 16 15 C 0.27 3.82 6.64 -83.93 -0.56 3.26 16 16 C -0.23 -3.00 9.33 -39.31 -0.37 -3.37 16 17 C -0.04 -0.45 10.01 -39.71 -0.40 -0.85 16 18 C -0.21 -2.57 10.06 -39.26 -0.39 -2.96 16 19 C 0.15 1.99 7.03 -38.98 -0.27 1.72 16 20 C -0.26 -3.50 6.20 -103.77 -0.64 -4.15 16 21 C -0.10 -1.00 6.77 -26.38 -0.18 -1.18 16 22 C 0.05 0.50 8.00 38.06 0.30 0.80 16 23 O -0.31 -3.93 11.11 -20.22 -0.22 -4.16 16 24 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 25 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 29 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 34 H 0.06 0.89 7.95 -51.93 -0.41 0.47 16 35 H 0.40 5.26 5.85 -40.82 -0.24 5.02 16 36 H 0.13 1.61 6.75 -52.48 -0.35 1.26 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -29.63 329.12 -8.38 -38.01 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.45 Total: 3.41 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.48 Total: -21.95 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.47 Total: -36.70 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.22 Total: -4.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.63 -8.38 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355568149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.884 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds