Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.53000 * 109.46630 * 240.00456 * 2 1 3 5 5 C 1.50696 * 109.47544 * 60.00359 * 4 2 1 6 6 H 1.08001 * 119.99804 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00346 * 180.02562 * 5 4 2 8 8 N 1.31524 * 120.00238 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00112 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47257 * 90.00161 * 9 7 5 11 11 H 1.48503 * 109.47244 * 210.00672 * 9 7 5 12 12 H 1.48508 * 109.47019 * 330.00376 * 9 7 5 13 13 C 1.52999 * 109.47213 * 120.00567 * 2 1 3 14 14 N 1.46503 * 109.46693 * 299.99787 * 13 2 1 15 15 C 1.39672 * 119.99663 * 180.02562 * 14 13 2 16 16 C 1.39084 * 120.08779 * 0.02562 * 15 14 13 17 17 C 1.38113 * 119.68256 * 179.97438 * 16 15 14 18 18 C 1.38022 * 120.43040 * 0.18333 * 17 16 15 19 19 C 1.39319 * 120.39792 * 0.03710 * 18 17 16 20 20 C 1.38354 * 120.08830 * 179.97438 * 15 14 13 21 21 C 1.51933 * 132.11263 * 358.87487 * 20 15 14 22 22 C 1.54707 * 101.77920 * 195.82456 * 21 20 15 23 23 O 1.36152 * 129.85396 * 179.52154 * 19 18 17 24 24 H 1.09004 * 109.46722 * 299.99493 * 1 2 3 25 25 H 1.09003 * 109.47004 * 59.99729 * 1 2 3 26 26 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47513 * 300.00582 * 3 2 1 29 29 H 1.09004 * 109.46998 * 60.00675 * 3 2 1 30 30 H 1.09006 * 109.46935 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47583 * 299.99393 * 4 2 1 32 32 H 0.96995 * 119.99686 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46903 * 180.02562 * 13 2 1 34 34 H 1.08995 * 109.46887 * 59.99843 * 13 2 1 35 35 H 0.96994 * 120.00576 * 0.02562 * 14 13 2 36 36 H 1.08005 * 120.15809 * 359.94563 * 16 15 14 37 37 H 1.07990 * 119.78647 * 180.21412 * 17 16 15 38 38 H 1.08000 * 119.80034 * 180.02562 * 18 17 16 39 39 H 1.09000 * 110.89618 * 77.76085 * 21 20 15 40 40 H 1.09002 * 111.10637 * 313.98156 * 21 20 15 41 41 H 1.09002 * 110.75211 * 216.53535 * 22 21 20 42 42 H 1.09002 * 110.74833 * 93.36191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8702 -0.4820 -3.7320 8 7 1.4315 0.1379 -4.8058 9 14 2.9440 -2.0008 -3.9036 10 1 2.0854 -3.2115 -3.9485 11 1 3.7356 -1.9084 -5.1567 12 1 3.8649 -2.0898 -2.7419 13 6 2.0401 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8896 -0.5077 3.7139 16 6 2.6900 -1.6378 3.8435 17 6 3.0194 -2.1019 5.1019 18 6 2.5566 -1.4539 6.2293 19 6 1.7504 -0.3238 6.1118 20 6 1.4299 0.1433 4.8448 21 6 0.5775 1.3875 5.0285 22 6 0.8277 1.7247 6.5175 23 8 1.1869 0.4504 7.0797 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2494 32 1 1.6658 -0.1935 -5.6868 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2490 35 1 0.9938 0.7577 2.3565 36 1 3.0518 -2.1502 2.9643 37 1 3.6436 -2.9771 5.2045 38 1 2.8207 -1.8254 7.2084 39 1 -0.4751 1.1673 4.8504 40 1 0.9195 2.1964 4.3830 41 1 -0.0791 2.1099 6.9839 42 1 1.6457 2.4378 6.6198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355568149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = -36.863576 kcal Electronic energy + Delta-G solvation = -21227.154500 eV Core-core repulsion = 18171.082207 eV Total energy + Delta-G solvation = -3056.072293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93417 -39.71409 -38.18300 -35.51467 -34.26743 -32.95659 -30.40158 -30.05165 -28.94324 -28.01862 -27.12600 -24.52822 -24.11828 -22.66859 -22.00626 -19.72084 -18.90832 -18.57182 -17.73540 -17.09650 -16.69123 -16.27393 -16.18507 -15.79066 -15.43250 -15.09459 -14.50570 -14.28438 -14.22204 -14.16162 -14.00340 -13.77816 -13.47254 -12.95192 -12.83790 -12.68556 -12.58830 -12.47645 -12.30136 -12.08569 -11.99209 -11.83813 -11.72300 -11.49648 -11.17040 -10.90189 -10.78303 -10.70325 -9.10455 -8.29384 -8.22144 -6.23032 0.47376 0.71107 1.37421 1.39523 1.49610 2.39747 2.42032 2.52592 2.91744 3.13446 3.63038 3.78790 3.93250 4.06910 4.13066 4.17569 4.23435 4.32544 4.53156 4.56698 4.61127 4.68214 4.73051 4.73459 4.86721 4.92093 4.94401 4.98578 5.06715 5.08267 5.28708 5.33791 5.37466 5.39415 5.46756 5.53428 5.62793 5.67428 5.69988 5.76296 6.20835 6.37058 6.46461 6.83991 6.85295 7.39885 8.93794 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031662 B = 0.003844 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.115107 B = 7281.785510 C = 7952.013449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C -0.122 4.122 4 C -0.001 4.001 5 C -0.505 4.505 6 H 0.046 0.954 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.246 1.246 13 C 0.143 3.857 14 N -0.732 5.732 15 C 0.258 3.742 16 C -0.240 4.240 17 C -0.037 4.037 18 C -0.213 4.213 19 C 0.130 3.870 20 C -0.275 4.275 21 C -0.098 4.098 22 C 0.051 3.949 23 O -0.325 6.325 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.262 0.738 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.402 0.598 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -0.487 22.779 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.179 4.179 4 C -0.039 4.039 5 C -0.543 4.543 6 H 0.064 0.936 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.169 1.169 13 C 0.019 3.981 14 N -0.360 5.360 15 C 0.152 3.848 16 C -0.262 4.262 17 C -0.056 4.056 18 C -0.234 4.234 19 C 0.084 3.916 20 C -0.281 4.281 21 C -0.135 4.135 22 C -0.024 4.024 23 O -0.239 6.239 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.238 0.762 36 H 0.148 0.852 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.145 0.855 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.324 -0.626 22.662 22.709 hybrid contribution 0.038 -0.092 -1.137 1.141 sum 1.362 -0.718 21.525 21.580 Atomic orbital electron populations 1.21676 0.94577 1.01102 1.00577 1.20526 0.95977 0.95947 0.93366 1.21667 1.00265 0.95361 1.00597 1.19551 0.96087 0.95488 0.92772 1.21394 1.30287 1.12243 0.90391 0.93575 1.25898 0.97514 1.00143 0.95773 1.70061 1.48208 1.42829 0.98488 0.85831 0.79771 0.80024 0.78058 1.19650 1.21697 1.16930 1.21336 0.98182 0.95528 0.83098 1.44795 1.56697 1.32723 1.01811 1.17229 0.91733 0.91855 0.83996 1.20830 1.06935 0.99514 0.98947 1.20868 0.96154 0.98198 0.90332 1.20241 1.04451 0.98404 1.00291 1.19548 0.92302 0.93028 0.86678 1.20386 1.10699 1.04522 0.92463 1.21690 0.99703 0.94778 0.97293 1.24033 1.02700 0.83436 0.92182 1.86785 1.74944 1.26844 1.35329 0.92173 0.94066 0.93512 0.93475 0.94063 0.92134 0.96305 0.96509 0.92897 0.92242 0.92267 0.76161 0.85221 0.82891 0.84895 0.89488 0.88818 0.85457 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 2 C -0.06 -2.00 0.54 -52.18 -0.03 -2.02 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.00 -0.05 3.11 29.85 0.09 0.04 16 5 C -0.51 -27.22 8.20 25.60 0.21 -27.01 16 6 H 0.05 2.72 5.92 -2.91 -0.02 2.70 16 7 C 0.00 0.15 5.47 84.65 0.46 0.61 16 8 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 9 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 13 C 0.14 4.09 3.81 86.38 0.33 4.42 16 14 N -0.73 -18.61 5.13 -339.75 -1.74 -20.36 16 15 C 0.26 6.64 6.64 38.12 0.25 6.89 16 16 C -0.24 -5.85 9.33 22.44 0.21 -5.64 16 17 C -0.04 -0.79 10.01 22.19 0.22 -0.57 16 18 C -0.21 -4.88 10.06 22.48 0.23 -4.66 16 19 C 0.13 3.28 7.03 22.66 0.16 3.44 16 20 C -0.27 -6.72 6.20 -19.31 -0.12 -6.84 16 21 C -0.10 -1.77 6.77 30.82 0.21 -1.56 16 22 C 0.05 0.81 8.00 72.56 0.58 1.39 16 23 O -0.32 -7.64 11.11 -95.28 -1.06 -8.70 16 24 H 0.06 1.67 6.86 -2.38 -0.02 1.66 16 25 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 29 H 0.06 1.66 6.86 -2.38 -0.02 1.65 16 30 H 0.02 0.81 7.20 -2.38 -0.02 0.80 16 31 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 34 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 35 H 0.40 9.56 5.85 -92.71 -0.54 9.01 16 36 H 0.13 3.02 6.75 -2.91 -0.02 3.00 16 37 H 0.15 2.33 8.06 -2.92 -0.02 2.30 16 38 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -64.74 329.12 3.76 -60.98 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.41 Total: 19.93 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.96 Total: -38.60 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.45 Total: -78.83 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.06 Total: -8.70 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -64.74 3.76 -60.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355568149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.118 kcal (2) G-P(sol) polarization free energy of solvation -64.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds