Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47383 * 2 1 4 4 C 1.38305 * 119.96477 * 94.63118 * 3 2 1 5 5 C 1.38251 * 120.14196 * 179.74588 * 4 3 2 6 6 C 1.38136 * 120.07267 * 0.23482 * 5 4 3 7 7 C 1.38850 * 119.92696 * 0.02562 * 6 5 4 8 8 N 1.39922 * 120.07316 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99720 * 325.39654 * 8 7 6 10 10 O 1.21284 * 120.00285 * 4.28908 * 9 8 7 11 11 C 1.50701 * 119.99848 * 184.29700 * 9 8 7 12 12 C 1.52998 * 109.47326 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47326 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99884 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99963 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00061 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47213 * 59.99775 * 17 15 13 19 19 H 1.48494 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47021 * 300.00285 * 17 15 13 21 21 C 1.38091 * 119.96524 * 274.88959 * 3 2 1 22 22 C 1.50700 * 120.03625 * 359.97438 * 21 3 2 23 23 C 1.52998 * 109.47112 * 274.87346 * 22 21 3 24 24 H 1.08999 * 109.47182 * 64.97453 * 1 2 3 25 25 H 1.08996 * 109.47059 * 184.97902 * 1 2 3 26 26 H 1.09003 * 109.46408 * 304.97711 * 1 2 3 27 27 H 1.09004 * 109.46569 * 239.99818 * 2 1 3 28 28 H 1.08996 * 109.47180 * 120.00770 * 2 1 3 29 29 H 1.08007 * 119.92427 * 0.02705 * 4 3 2 30 30 H 1.07998 * 119.96710 * 180.25436 * 5 4 3 31 31 H 1.07995 * 120.03851 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00653 * 145.38353 * 8 7 6 33 33 H 1.08999 * 109.47126 * 299.99419 * 11 9 8 34 34 H 1.09006 * 109.47379 * 59.99652 * 11 9 8 35 35 H 1.09008 * 109.47016 * 299.99825 * 12 11 9 36 36 H 1.09000 * 109.47509 * 59.99895 * 12 11 9 37 37 H 0.96997 * 119.99997 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.47127 * 34.87178 * 22 21 3 39 39 H 1.09002 * 109.47306 * 154.87249 * 22 21 3 40 40 H 1.09000 * 109.46886 * 184.97791 * 23 22 21 41 41 H 1.09004 * 109.47068 * 304.97809 * 23 22 21 42 42 H 1.08999 * 109.47286 * 64.97971 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3539 2.0398 1.1943 5 6 2.8201 3.3413 1.1981 6 6 2.9617 4.0294 0.0087 7 6 2.6347 3.4126 -1.1915 8 7 2.7774 4.1065 -2.3981 9 6 2.5425 5.4329 -2.4445 10 8 2.2836 6.0389 -1.4264 11 6 2.6015 6.1629 -3.7616 12 6 2.2981 7.6456 -3.5370 13 6 2.3564 8.3755 -4.8541 14 1 2.5874 7.8359 -5.7607 15 6 2.1150 9.7322 -4.9018 16 7 1.8343 10.3893 -3.7977 17 14 2.1881 10.6371 -6.5343 18 1 1.1843 10.0612 -7.4649 19 1 1.8922 12.0759 -6.3164 20 1 3.5453 10.4934 -7.1196 21 6 2.1662 2.1050 -1.1920 22 6 1.8107 1.4316 -2.4924 23 6 3.0103 0.6250 -2.9936 24 1 -0.3633 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0892 26 1 -0.3632 0.5891 0.8421 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2448 1.5036 2.1255 30 1 3.0742 3.8206 2.1320 31 1 3.3263 5.0459 0.0123 32 1 3.0455 3.6332 -3.2012 33 1 3.5975 6.0567 -4.1916 34 1 1.8641 5.7408 -4.4444 35 1 1.3019 7.7515 -3.1072 36 1 3.0352 8.0680 -2.8541 37 1 1.6642 11.3437 -3.8312 38 1 0.9636 0.7637 -2.3360 39 1 1.5461 2.1869 -3.2323 40 1 2.7843 0.2103 -3.9760 41 1 3.8815 1.2762 -3.0657 42 1 3.2197 -0.1862 -2.2963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360474961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -41.623342 kcal Electronic energy + Delta-G solvation = -20905.683675 eV Core-core repulsion = 17849.404983 eV Total energy + Delta-G solvation = -3056.278692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54397 -38.71963 -35.04469 -34.67646 -33.50268 -32.54325 -31.07752 -29.01180 -28.90682 -25.78681 -24.54147 -23.48829 -22.38439 -20.77876 -20.68513 -19.46244 -17.38855 -16.74724 -16.13236 -15.86809 -15.52981 -14.79488 -14.55913 -14.40896 -13.94479 -13.72357 -13.65780 -13.41985 -13.26265 -12.60029 -12.43978 -12.24735 -12.19034 -12.03868 -11.71130 -11.50397 -11.33613 -11.20604 -10.93487 -10.81744 -10.70711 -10.64404 -10.02341 -9.99908 -9.69546 -9.22220 -9.07933 -8.49537 -8.34815 -7.89728 -5.98423 -4.03293 1.39632 1.47057 3.08456 3.33122 3.36200 3.38563 3.42125 3.86597 4.45482 4.63235 4.72889 4.82101 4.88941 5.15910 5.17514 5.25951 5.28604 5.31452 5.36506 5.45630 5.53886 5.57946 5.65043 5.70483 5.73140 5.86571 5.98920 6.01425 6.06312 6.13441 6.14747 6.22586 6.45959 6.57882 6.68084 6.72262 6.82414 7.21652 7.69610 7.71871 7.80945 8.03174 8.34143 8.60909 9.04468 9.60419 11.12445 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.003461 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.063162 B = 8088.849344 C = 8590.671353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.104 4.104 6 C -0.125 4.125 7 C 0.161 3.839 8 N -0.685 5.685 9 C 0.508 3.492 10 O -0.513 6.513 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.113 4.113 22 C -0.088 4.088 23 C -0.148 4.148 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.407 0.593 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -22.950 5.673 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.067 4.067 4 C -0.159 4.159 5 C -0.123 4.123 6 C -0.146 4.146 7 C 0.066 3.934 8 N -0.331 5.331 9 C 0.298 3.702 10 O -0.386 6.386 11 C -0.169 4.169 12 C 0.000 4.000 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.205 4.205 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.243 0.757 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.071 -22.238 6.412 23.168 hybrid contribution 0.143 0.426 -1.182 1.264 sum 1.214 -21.812 5.230 22.463 Atomic orbital electron populations 1.21767 0.94869 1.01445 1.02448 1.20556 0.96123 0.92805 1.02666 1.19445 0.99339 0.95815 0.92136 1.20906 1.02429 0.95398 0.97133 1.21009 0.99187 0.94312 0.97748 1.21371 1.00717 1.01396 0.91086 1.17673 0.97807 0.91229 0.86702 1.43936 1.69361 1.09564 1.10196 1.21832 0.74557 0.80513 0.93281 1.90665 1.45368 1.66229 1.36339 1.21911 1.02887 1.00491 0.91595 1.18910 0.98234 0.85850 0.97043 1.21162 1.48676 0.93349 0.93565 0.92605 1.25024 0.95220 0.97716 0.96375 1.69985 1.47254 1.08718 1.26803 0.86637 0.78499 0.78724 0.83986 1.20230 1.21264 1.20226 1.19462 1.02921 0.93850 0.95326 1.20519 0.98760 0.99262 0.93994 1.21787 0.97878 1.00088 1.00796 0.92414 0.92583 0.92474 0.90799 0.91286 0.86488 0.86036 0.84179 0.75744 0.89887 0.89887 0.95733 0.95723 0.92843 0.90495 0.91121 0.92302 0.92642 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.76 37.16 0.36 -0.84 16 2 C -0.08 -0.72 5.38 -27.88 -0.15 -0.87 16 3 C -0.07 -0.76 5.13 -104.65 -0.54 -1.30 16 4 C -0.14 -1.64 9.68 -39.55 -0.38 -2.02 16 5 C -0.10 -1.38 10.04 -39.61 -0.40 -1.78 16 6 C -0.13 -2.01 8.70 -39.39 -0.34 -2.35 16 7 C 0.16 2.42 6.29 -83.70 -0.53 1.89 16 8 N -0.68 -10.19 4.74 -9.86 -0.05 -10.24 16 9 C 0.51 9.75 7.67 -10.98 -0.08 9.66 16 10 O -0.51 -11.86 13.40 5.55 0.07 -11.78 16 11 C -0.13 -2.56 5.64 -27.88 -0.16 -2.72 16 12 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 13 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.11 -1.40 5.15 -104.43 -0.54 -1.94 16 22 C -0.09 -0.87 4.94 -27.88 -0.14 -1.00 16 23 C -0.15 -1.20 9.76 37.16 0.36 -0.84 16 24 H 0.06 0.50 6.73 -51.93 -0.35 0.15 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.57 5.59 -51.93 -0.29 0.28 16 28 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.14 2.55 6.20 -52.49 -0.33 2.22 16 32 H 0.41 4.74 7.75 -40.82 -0.32 4.43 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 0.69 5.59 -51.93 -0.29 0.40 16 39 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.44 6.74 -51.93 -0.35 0.09 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -33.11 340.04 -8.65 -41.76 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.46 Total: 2.02 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.06 Total: -16.85 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.69 Total: -36.82 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.11 -8.65 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360474961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.139 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds