Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47383 * 2 1 4 4 C 1.38305 * 119.96477 * 94.63118 * 3 2 1 5 5 C 1.38251 * 120.14196 * 179.74588 * 4 3 2 6 6 C 1.38136 * 120.07267 * 0.23482 * 5 4 3 7 7 C 1.38850 * 119.92696 * 0.02562 * 6 5 4 8 8 N 1.39922 * 120.07316 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99720 * 325.39654 * 8 7 6 10 10 O 1.21284 * 120.00285 * 4.28908 * 9 8 7 11 11 C 1.50701 * 119.99848 * 184.29700 * 9 8 7 12 12 C 1.52998 * 109.47326 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47326 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99884 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99963 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00061 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47213 * 59.99775 * 17 15 13 19 19 H 1.48494 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47021 * 300.00285 * 17 15 13 21 21 C 1.38091 * 119.96524 * 274.88959 * 3 2 1 22 22 C 1.50700 * 120.03625 * 359.97438 * 21 3 2 23 23 C 1.52998 * 109.47112 * 274.87346 * 22 21 3 24 24 H 1.08999 * 109.47182 * 64.97453 * 1 2 3 25 25 H 1.08996 * 109.47059 * 184.97902 * 1 2 3 26 26 H 1.09003 * 109.46408 * 304.97711 * 1 2 3 27 27 H 1.09004 * 109.46569 * 239.99818 * 2 1 3 28 28 H 1.08996 * 109.47180 * 120.00770 * 2 1 3 29 29 H 1.08007 * 119.92427 * 0.02705 * 4 3 2 30 30 H 1.07998 * 119.96710 * 180.25436 * 5 4 3 31 31 H 1.07995 * 120.03851 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00653 * 145.38353 * 8 7 6 33 33 H 1.08999 * 109.47126 * 299.99419 * 11 9 8 34 34 H 1.09006 * 109.47379 * 59.99652 * 11 9 8 35 35 H 1.09008 * 109.47016 * 299.99825 * 12 11 9 36 36 H 1.09000 * 109.47509 * 59.99895 * 12 11 9 37 37 H 0.96997 * 119.99997 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.47127 * 34.87178 * 22 21 3 39 39 H 1.09002 * 109.47306 * 154.87249 * 22 21 3 40 40 H 1.09000 * 109.46886 * 184.97791 * 23 22 21 41 41 H 1.09004 * 109.47068 * 304.97809 * 23 22 21 42 42 H 1.08999 * 109.47286 * 64.97971 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3539 2.0398 1.1943 5 6 2.8201 3.3413 1.1981 6 6 2.9617 4.0294 0.0087 7 6 2.6347 3.4126 -1.1915 8 7 2.7774 4.1065 -2.3981 9 6 2.5425 5.4329 -2.4445 10 8 2.2836 6.0389 -1.4264 11 6 2.6015 6.1629 -3.7616 12 6 2.2981 7.6456 -3.5370 13 6 2.3564 8.3755 -4.8541 14 1 2.5874 7.8359 -5.7607 15 6 2.1150 9.7322 -4.9018 16 7 1.8343 10.3893 -3.7977 17 14 2.1881 10.6371 -6.5343 18 1 1.1843 10.0612 -7.4649 19 1 1.8922 12.0759 -6.3164 20 1 3.5453 10.4934 -7.1196 21 6 2.1662 2.1050 -1.1920 22 6 1.8107 1.4316 -2.4924 23 6 3.0103 0.6250 -2.9936 24 1 -0.3633 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0892 26 1 -0.3632 0.5891 0.8421 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2448 1.5036 2.1255 30 1 3.0742 3.8206 2.1320 31 1 3.3263 5.0459 0.0123 32 1 3.0455 3.6332 -3.2012 33 1 3.5975 6.0567 -4.1916 34 1 1.8641 5.7408 -4.4444 35 1 1.3019 7.7515 -3.1072 36 1 3.0352 8.0680 -2.8541 37 1 1.6642 11.3437 -3.8312 38 1 0.9636 0.7637 -2.3360 39 1 1.5461 2.1869 -3.2323 40 1 2.7843 0.2103 -3.9760 41 1 3.8815 1.2762 -3.0657 42 1 3.2197 -0.1862 -2.2963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360474961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -60.905626 kcal Electronic energy + Delta-G solvation = -20906.519818 eV Core-core repulsion = 17849.404983 eV Total energy + Delta-G solvation = -3057.114835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76184 -40.00473 -36.27669 -35.67116 -35.48434 -33.56118 -32.90068 -30.08362 -29.87032 -27.69678 -25.35235 -24.70375 -23.72167 -22.15021 -21.75597 -20.77738 -18.93801 -18.27598 -17.54391 -16.96592 -16.91719 -16.46811 -16.12548 -15.48846 -14.94821 -14.86932 -14.61849 -14.43819 -14.23551 -14.16156 -14.13040 -13.31186 -13.21499 -13.06441 -12.93478 -12.80354 -12.66856 -12.52752 -12.20257 -12.06872 -11.94960 -11.67248 -11.62694 -11.51584 -11.34672 -11.19836 -10.69228 -10.56957 -9.49255 -9.04295 -8.19181 -6.33593 0.32434 0.42856 1.41733 1.46265 1.53992 1.61434 2.09150 2.43166 2.81673 3.13907 3.78936 3.84540 3.89052 4.08072 4.11997 4.35170 4.39589 4.48792 4.49230 4.51758 4.54646 4.60385 4.64566 4.68527 4.87763 4.99171 5.00977 5.07996 5.11877 5.17335 5.26341 5.37118 5.40047 5.47672 5.49162 5.56324 5.59295 5.61762 5.72827 5.82795 6.13367 6.15495 6.44523 6.84273 7.18529 7.36797 8.93301 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.003461 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.063162 B = 8088.849344 C = 8590.671353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.067 4.067 4 C -0.134 4.134 5 C -0.114 4.114 6 C -0.156 4.156 7 C 0.133 3.867 8 N -0.662 5.662 9 C 0.510 3.490 10 O -0.564 6.564 11 C -0.116 4.116 12 C 0.043 3.957 13 C -0.545 4.545 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.975 3.025 18 H -0.262 1.262 19 H -0.288 1.288 20 H -0.262 1.262 21 C -0.108 4.108 22 C -0.088 4.088 23 C -0.145 4.145 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.424 0.576 33 H 0.110 0.890 34 H 0.109 0.891 35 H -0.018 1.018 36 H -0.017 1.017 37 H 0.263 0.737 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -26.180 3.952 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.067 4.067 4 C -0.153 4.153 5 C -0.132 4.132 6 C -0.176 4.176 7 C 0.038 3.962 8 N -0.308 5.308 9 C 0.300 3.700 10 O -0.441 6.441 11 C -0.156 4.156 12 C 0.005 3.995 13 C -0.582 4.582 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.202 4.202 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.082 -25.542 4.665 25.987 hybrid contribution 0.132 1.329 -0.533 1.438 sum 1.214 -24.213 4.132 24.593 Atomic orbital electron populations 1.21769 0.94501 1.02533 1.01704 1.20632 0.96249 0.90676 1.04256 1.19905 0.98018 0.97336 0.91486 1.21278 1.00717 0.94551 0.98711 1.21200 0.99459 0.95282 0.97287 1.21283 1.02859 1.00460 0.93035 1.17863 0.99819 0.92477 0.86003 1.43520 1.68046 1.08024 1.11236 1.21639 0.74291 0.81822 0.92248 1.90660 1.48070 1.67678 1.37724 1.21670 1.05090 0.96183 0.92653 1.18687 0.94631 0.90464 0.95721 1.21676 1.48031 0.93980 0.94547 0.90424 1.26150 0.94587 0.99013 1.00698 1.70174 1.48650 1.09078 1.29866 0.85361 0.79406 0.76788 0.78622 1.18625 1.21409 1.18635 1.19778 1.01469 0.92595 0.97232 1.20607 1.00088 0.99440 0.92404 1.21770 0.96630 0.99875 1.01891 0.93098 0.90554 0.93398 0.89427 0.89564 0.83558 0.84846 0.87674 0.73714 0.87232 0.87267 0.99924 0.99823 0.92847 0.89089 0.91578 0.90578 0.93311 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.76 71.98 0.70 -1.24 16 2 C -0.08 -1.08 5.38 29.85 0.16 -0.92 16 3 C -0.07 -1.37 5.13 -19.88 -0.10 -1.47 16 4 C -0.13 -2.90 9.68 22.29 0.22 -2.69 16 5 C -0.11 -3.08 10.04 22.25 0.22 -2.85 16 6 C -0.16 -5.29 8.70 22.39 0.19 -5.09 16 7 C 0.13 4.03 6.29 38.15 0.24 4.27 16 8 N -0.66 -19.84 4.74 -303.51 -1.44 -21.28 16 9 C 0.51 20.36 7.67 87.66 0.67 21.03 16 10 O -0.56 -28.17 13.40 -3.04 -0.04 -28.21 16 11 C -0.12 -4.66 5.64 29.85 0.17 -4.49 16 12 C 0.04 2.38 4.26 29.85 0.13 2.51 16 13 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 14 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 15 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 16 N -0.94 -59.82 13.29 21.45 0.28 -59.54 16 17 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 C -0.11 -2.54 5.15 -19.74 -0.10 -2.64 16 22 C -0.09 -1.51 4.94 29.85 0.15 -1.36 16 23 C -0.14 -1.89 9.76 71.98 0.70 -1.19 16 24 H 0.05 0.74 6.73 -2.39 -0.02 0.72 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 0.97 5.59 -2.38 -0.01 0.96 16 28 H 0.09 0.91 8.05 -2.39 -0.02 0.89 16 29 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.11 4.26 6.20 -2.91 -0.02 4.24 16 32 H 0.42 9.39 7.75 -92.71 -0.72 8.67 16 33 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.11 3.80 8.14 -2.38 -0.02 3.78 16 35 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 36 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 37 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.09 1.33 5.59 -2.38 -0.01 1.31 16 39 H 0.07 1.20 6.94 -2.39 -0.02 1.18 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.76 6.74 -2.39 -0.02 0.75 16 Total: -1.00 -76.85 340.04 5.17 -71.68 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.29 Total: 17.85 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.05 Total: -26.80 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.15 Total: -80.82 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.04 Total: -28.21 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.85 5.17 -71.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360474961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.772 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds