Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47462 * 2 1 4 4 C 1.50700 * 109.47123 * 120.00645 * 2 1 3 5 5 C 1.38258 * 119.99438 * 299.97411 * 4 2 1 6 6 C 1.38209 * 119.99989 * 180.02562 * 5 4 2 7 7 C 1.38265 * 119.99628 * 359.80930 * 6 5 4 8 8 C 1.38213 * 119.99941 * 0.44612 * 7 6 5 9 9 C 1.50700 * 119.99762 * 179.79047 * 8 7 6 10 10 N 1.46498 * 109.46769 * 269.71912 * 9 8 7 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 8 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52990 * 109.47398 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47398 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31524 * 120.00004 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46903 * 119.99599 * 19 17 15 22 22 H 1.48498 * 109.47416 * 240.00014 * 19 17 15 23 23 C 1.38208 * 120.00463 * 119.99807 * 4 2 1 24 24 H 1.09002 * 109.46811 * 299.99847 * 1 2 3 25 25 H 1.09003 * 109.47244 * 59.99218 * 1 2 3 26 26 H 1.08999 * 109.47715 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46602 * 239.99700 * 2 1 3 28 28 H 1.09011 * 109.47394 * 300.00368 * 3 2 1 29 29 H 1.09002 * 109.46982 * 60.00258 * 3 2 1 30 30 H 1.09001 * 109.47197 * 180.02562 * 3 2 1 31 31 H 1.08004 * 120.00597 * 359.97438 * 5 4 2 32 32 H 1.07995 * 120.00700 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.99581 * 180.23353 * 7 6 5 34 34 H 1.09004 * 109.47210 * 149.72270 * 9 8 7 35 35 H 1.08994 * 109.47121 * 29.72240 * 9 8 7 36 36 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 37 37 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 38 38 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 39 39 H 1.08998 * 109.47508 * 300.00200 * 14 13 11 40 40 H 1.09011 * 109.47182 * 60.00188 * 14 13 11 41 41 H 0.96991 * 119.99897 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.99769 * 359.96708 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6987 -0.2379 2.4861 6 6 2.1598 -0.8892 3.6146 7 6 2.9514 -2.0156 3.4876 8 6 3.2893 -2.4850 2.2323 9 6 4.1560 -3.7100 2.0940 10 7 5.5643 -3.3090 2.0479 11 6 6.5278 -4.2442 1.9317 12 8 6.2287 -5.4174 1.8601 13 6 7.9768 -3.8323 1.8905 14 6 8.8570 -5.0763 1.7550 15 6 10.3061 -4.6644 1.7145 16 1 10.5725 -3.6197 1.7785 17 6 11.2917 -5.6210 1.5947 18 7 10.9673 -6.8932 1.5162 19 14 13.0878 -5.1104 1.5437 20 1 13.1854 -3.6323 1.6493 21 1 13.8127 -5.7361 2.6788 22 1 13.6932 -5.5567 0.2633 23 6 2.8269 -1.8343 1.1036 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1301 1.4423 -0.0005 31 1 1.0784 0.6407 2.5853 32 1 1.8996 -0.5199 4.5955 33 1 3.3086 -2.5267 4.3695 34 1 3.8977 -4.2360 1.1749 35 1 3.9934 -4.3683 2.9473 36 1 5.8036 -2.3707 2.1054 37 1 8.1435 -3.1750 1.0372 38 1 8.2310 -3.3052 2.8101 39 1 8.6904 -5.7340 2.6081 40 1 8.6028 -5.6029 0.8351 41 1 11.6606 -7.5661 1.4316 42 1 3.0873 -2.2035 0.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360650806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -46.287699 kcal Electronic energy + Delta-G solvation = -20038.495589 eV Core-core repulsion = 16982.014636 eV Total energy + Delta-G solvation = -3056.480954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06390 -38.92168 -36.08763 -34.31125 -33.41710 -31.53800 -30.76445 -30.08263 -27.47748 -26.72191 -25.03565 -23.34930 -22.33932 -21.45338 -19.93262 -19.41777 -17.08577 -16.73167 -16.03493 -15.70874 -15.56361 -15.13979 -14.81360 -14.39286 -14.19878 -13.96933 -13.85979 -13.18980 -12.99699 -12.93947 -12.68847 -12.34074 -12.29648 -12.14005 -11.89993 -11.51084 -11.46521 -11.13176 -10.93871 -10.92319 -10.88999 -10.56205 -9.93371 -9.64708 -9.33269 -9.07961 -8.97059 -8.75747 -8.74180 -8.30267 -5.94313 -3.98532 1.05942 1.17491 3.29264 3.33837 3.36662 3.41040 3.44441 3.89725 4.30614 4.43920 4.49509 4.63149 4.79826 4.86160 4.91685 5.03781 5.20000 5.26884 5.27849 5.39446 5.40625 5.48166 5.49868 5.57242 5.68596 5.77030 5.86178 5.88910 5.89864 5.93628 6.24804 6.25987 6.28454 6.37466 6.44348 6.72184 6.78801 6.92744 7.76971 7.89014 7.93057 8.09576 8.41067 8.81413 9.10465 9.64937 11.16729 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002739 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.753878 B =10221.896676 C =10548.724518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.097 4.097 9 C 0.159 3.841 10 N -0.740 5.740 11 C 0.509 3.491 12 O -0.535 6.535 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.100 4.100 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.085 17.234 0.255 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.130 4.130 6 C -0.138 4.138 7 C -0.125 4.125 8 C -0.098 4.098 9 C 0.036 3.964 10 N -0.394 5.394 11 C 0.298 3.702 12 O -0.411 6.411 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.219 16.164 0.178 27.477 hybrid contribution 1.061 0.657 0.069 1.250 sum -21.158 16.821 0.246 27.031 Atomic orbital electron populations 1.21856 0.94329 1.02060 1.01855 1.20141 0.95943 0.96122 0.95464 1.21858 1.01446 0.94992 1.01844 1.19851 0.97699 0.95615 0.94746 1.20978 1.00152 0.99872 0.91987 1.21128 0.98221 0.95875 0.98564 1.21126 0.97874 0.96471 0.96986 1.19951 0.99077 0.97329 0.93431 1.20105 0.80451 0.93138 1.02730 1.46271 1.05257 1.10440 1.77458 1.21594 0.88640 0.85554 0.74451 1.90671 1.83825 1.18213 1.48350 1.21862 0.89105 1.03476 1.02485 1.18907 0.92146 0.90539 0.98532 1.21267 0.91336 0.93115 1.50674 0.92562 1.25034 0.99112 0.94950 0.95371 1.70013 1.32923 0.99958 1.49982 0.86535 0.85225 0.78617 0.77578 1.19756 1.21030 1.21023 1.21030 0.97306 0.95076 0.98398 0.92518 0.92380 0.92487 0.90351 0.92376 0.92518 0.92361 0.86263 0.86009 0.85844 0.91052 0.91015 0.76851 0.90269 0.90259 0.95814 0.95811 0.93022 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.01 37.16 0.33 -0.56 16 2 C -0.06 -0.42 3.09 -91.78 -0.28 -0.70 16 3 C -0.14 -0.94 9.01 37.15 0.33 -0.60 16 4 C -0.08 -0.70 4.78 -104.63 -0.50 -1.20 16 5 C -0.11 -0.93 8.71 -39.58 -0.34 -1.28 16 6 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 7 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 8 C -0.10 -1.05 5.25 -104.63 -0.55 -1.60 16 9 C 0.16 2.08 5.80 -5.19 -0.03 2.05 16 10 N -0.74 -10.79 5.55 -61.47 -0.34 -11.14 16 11 C 0.51 10.00 7.83 -10.98 -0.09 9.92 16 12 O -0.54 -12.86 15.98 5.55 0.09 -12.77 16 13 C -0.13 -2.67 5.64 -27.89 -0.16 -2.83 16 14 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 15 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.10 -1.00 9.33 -39.59 -0.37 -1.37 16 24 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.34 7.39 -51.93 -0.38 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.12 0.79 7.10 -52.48 -0.37 0.42 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.40 4.83 8.46 -40.82 -0.35 4.48 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.71 8.10 -51.92 -0.42 0.28 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.12 1.17 7.95 -52.49 -0.42 0.76 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -33.90 352.25 -9.11 -43.01 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.92 Total: -0.27 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.96 Total: -13.99 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.40 Total: -38.11 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.90 -9.11 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360650806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.277 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds