Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47462 * 2 1 4 4 C 1.50700 * 109.47123 * 120.00645 * 2 1 3 5 5 C 1.38258 * 119.99438 * 299.97411 * 4 2 1 6 6 C 1.38209 * 119.99989 * 180.02562 * 5 4 2 7 7 C 1.38265 * 119.99628 * 359.80930 * 6 5 4 8 8 C 1.38213 * 119.99941 * 0.44612 * 7 6 5 9 9 C 1.50700 * 119.99762 * 179.79047 * 8 7 6 10 10 N 1.46498 * 109.46769 * 269.71912 * 9 8 7 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 8 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52990 * 109.47398 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47398 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31524 * 120.00004 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46903 * 119.99599 * 19 17 15 22 22 H 1.48498 * 109.47416 * 240.00014 * 19 17 15 23 23 C 1.38208 * 120.00463 * 119.99807 * 4 2 1 24 24 H 1.09002 * 109.46811 * 299.99847 * 1 2 3 25 25 H 1.09003 * 109.47244 * 59.99218 * 1 2 3 26 26 H 1.08999 * 109.47715 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46602 * 239.99700 * 2 1 3 28 28 H 1.09011 * 109.47394 * 300.00368 * 3 2 1 29 29 H 1.09002 * 109.46982 * 60.00258 * 3 2 1 30 30 H 1.09001 * 109.47197 * 180.02562 * 3 2 1 31 31 H 1.08004 * 120.00597 * 359.97438 * 5 4 2 32 32 H 1.07995 * 120.00700 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.99581 * 180.23353 * 7 6 5 34 34 H 1.09004 * 109.47210 * 149.72270 * 9 8 7 35 35 H 1.08994 * 109.47121 * 29.72240 * 9 8 7 36 36 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 37 37 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 38 38 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 39 39 H 1.08998 * 109.47508 * 300.00200 * 14 13 11 40 40 H 1.09011 * 109.47182 * 60.00188 * 14 13 11 41 41 H 0.96991 * 119.99897 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.99769 * 359.96708 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6987 -0.2379 2.4861 6 6 2.1598 -0.8892 3.6146 7 6 2.9514 -2.0156 3.4876 8 6 3.2893 -2.4850 2.2323 9 6 4.1560 -3.7100 2.0940 10 7 5.5643 -3.3090 2.0479 11 6 6.5278 -4.2442 1.9317 12 8 6.2287 -5.4174 1.8601 13 6 7.9768 -3.8323 1.8905 14 6 8.8570 -5.0763 1.7550 15 6 10.3061 -4.6644 1.7145 16 1 10.5725 -3.6197 1.7785 17 6 11.2917 -5.6210 1.5947 18 7 10.9673 -6.8932 1.5162 19 14 13.0878 -5.1104 1.5437 20 1 13.1854 -3.6323 1.6493 21 1 13.8127 -5.7361 2.6788 22 1 13.6932 -5.5567 0.2633 23 6 2.8269 -1.8343 1.1036 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1301 1.4423 -0.0005 31 1 1.0784 0.6407 2.5853 32 1 1.8996 -0.5199 4.5955 33 1 3.3086 -2.5267 4.3695 34 1 3.8977 -4.2360 1.1749 35 1 3.9934 -4.3683 2.9473 36 1 5.8036 -2.3707 2.1054 37 1 8.1435 -3.1750 1.0372 38 1 8.2310 -3.3052 2.8101 39 1 8.6904 -5.7340 2.6081 40 1 8.6028 -5.6029 0.8351 41 1 11.6606 -7.5661 1.4316 42 1 3.0873 -2.2035 0.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360650806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = -66.666641 kcal Electronic energy + Delta-G solvation = -20039.379287 eV Core-core repulsion = 16982.014636 eV Total energy + Delta-G solvation = -3057.364651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00999 -40.27385 -36.91542 -35.61068 -35.35989 -33.13987 -32.09220 -30.83729 -28.26862 -27.95492 -26.60634 -24.06164 -23.58503 -22.85681 -21.29503 -20.38013 -18.82616 -17.77591 -17.37281 -16.93993 -16.85582 -16.39288 -16.34531 -15.78726 -14.95387 -14.81933 -14.59173 -14.42622 -14.40962 -14.17229 -13.84374 -13.46385 -13.27633 -13.22575 -12.91781 -12.87677 -12.83714 -12.44965 -12.19864 -12.01037 -11.92920 -11.64497 -11.54858 -11.51276 -11.28790 -10.84290 -10.58023 -10.11588 -9.77729 -9.57789 -8.18107 -6.32165 0.29754 0.46494 1.42220 1.43785 1.57131 1.70085 2.27563 2.44930 2.91866 3.14864 3.58348 3.73833 3.94544 4.06129 4.15917 4.23526 4.32933 4.34279 4.47662 4.49862 4.55451 4.58675 4.68965 4.70684 4.83441 4.95189 5.01583 5.08024 5.09783 5.12059 5.24224 5.33654 5.40776 5.41402 5.51180 5.56621 5.63138 5.64618 5.72485 5.85637 6.07547 6.17732 6.58689 6.86510 7.32041 7.38201 8.94888 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002739 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.753878 B =10221.896676 C =10548.724518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.107 4.107 9 C 0.162 3.838 10 N -0.714 5.714 11 C 0.511 3.489 12 O -0.589 6.589 13 C -0.119 4.119 14 C 0.041 3.959 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.111 4.111 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.104 0.896 39 H -0.017 1.017 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.387 20.587 0.612 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.133 4.133 8 C -0.107 4.107 9 C 0.039 3.961 10 N -0.367 5.367 11 C 0.300 3.700 12 O -0.469 6.469 13 C -0.158 4.158 14 C 0.004 3.996 15 C -0.580 4.580 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.799 3.201 20 H -0.176 1.176 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.129 4.129 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.072 0.928 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.551 19.593 0.541 29.879 hybrid contribution 1.038 -0.351 -0.042 1.097 sum -21.513 19.242 0.499 28.867 Atomic orbital electron populations 1.21842 0.93458 1.01838 1.02739 1.20177 0.96615 0.96400 0.94549 1.21843 1.00862 0.94490 1.02718 1.20065 0.97098 0.95124 0.95830 1.21278 0.99666 1.00236 0.91537 1.21406 0.97341 0.95132 0.99847 1.21248 0.98332 0.97114 0.96604 1.19706 0.99802 0.96842 0.94357 1.20116 0.79588 0.94450 1.01970 1.45988 1.05311 1.10389 1.75032 1.21368 0.89126 0.85297 0.74221 1.90656 1.84477 1.20502 1.51243 1.21635 0.88750 1.00656 1.04789 1.18700 0.93736 0.92484 0.94712 1.21744 0.91936 0.94111 1.50162 0.90606 1.26158 1.04955 0.94781 0.94686 1.70189 1.34884 1.01587 1.51184 0.85256 0.78070 0.79225 0.77577 1.17602 1.20602 1.20595 1.21104 0.97953 0.95741 0.98113 0.91806 0.91362 0.93262 0.90763 0.91394 0.91799 0.93246 0.84097 0.83746 0.85486 0.91966 0.91740 0.74945 0.87810 0.87753 0.99895 0.99909 0.92848 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.01 71.98 0.65 -0.82 16 2 C -0.06 -0.74 3.09 -11.54 -0.04 -0.78 16 3 C -0.14 -1.51 9.01 71.98 0.65 -0.87 16 4 C -0.08 -1.29 4.78 -19.87 -0.09 -1.38 16 5 C -0.11 -1.52 8.71 22.27 0.19 -1.32 16 6 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 7 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 8 C -0.11 -2.22 5.25 -19.87 -0.10 -2.32 16 9 C 0.16 4.27 5.80 85.63 0.50 4.77 16 10 N -0.71 -20.46 5.55 -466.79 -2.59 -23.05 16 11 C 0.51 20.40 7.83 87.66 0.69 21.08 16 12 O -0.59 -29.68 15.98 -3.04 -0.05 -29.73 16 13 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 14 C 0.04 2.34 4.26 29.85 0.13 2.47 16 15 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 16 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 17 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 18 N -0.94 -60.22 13.29 21.45 0.28 -59.94 16 19 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 20 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 C -0.11 -2.12 9.33 22.27 0.21 -1.91 16 24 H 0.06 0.57 7.39 -2.39 -0.02 0.55 16 25 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.98 7.88 -2.38 -0.02 0.97 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.06 0.59 7.39 -2.39 -0.02 0.57 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.14 1.34 7.10 -2.91 -0.02 1.32 16 32 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16 35 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.41 9.32 8.46 -92.71 -0.78 8.54 16 37 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 38 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 39 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 40 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.12 2.29 7.95 -2.91 -0.02 2.27 16 Total: -1.00 -76.16 352.25 3.95 -72.20 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.20 Total: 13.97 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 4.08 Total: -20.22 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.30 Total: -82.99 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.16 3.95 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360650806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.538 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds