Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38162 * 120.02894 * 2 1 4 4 C 1.38251 * 120.05138 * 180.02562 * 3 2 1 5 5 C 1.38283 * 120.11132 * 359.97438 * 4 3 2 6 6 C 1.38120 * 120.05743 * 359.76644 * 5 4 3 7 7 C 1.38712 * 120.02181 * 180.02562 * 2 1 3 8 8 O 1.35903 * 120.05974 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99789 * 185.69124 * 8 7 2 10 10 H 1.08998 * 109.47228 * 35.10840 * 9 8 7 11 11 C 1.52998 * 109.47186 * 275.09986 * 9 8 7 12 12 C 1.53004 * 109.46865 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46793 * 60.00370 * 12 11 9 14 14 C 1.52998 * 109.47113 * 299.99478 * 13 12 11 15 15 C 1.53002 * 109.46371 * 155.10022 * 9 8 7 16 16 H 1.08999 * 109.47785 * 299.99963 * 15 9 8 17 17 N 1.46502 * 109.47173 * 60.00698 * 15 9 8 18 18 C 1.36932 * 119.99876 * 204.99664 * 17 15 9 19 19 H 1.08001 * 120.00456 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00066 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00439 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00087 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47247 * 89.99889 * 22 20 18 24 24 H 1.48500 * 109.47452 * 209.99966 * 22 20 18 25 25 H 1.48504 * 109.46965 * 330.00021 * 22 20 18 26 26 H 1.08993 * 109.47293 * 269.98813 * 1 2 3 27 27 H 1.09005 * 109.46803 * 29.98241 * 1 2 3 28 28 H 1.08998 * 109.47147 * 149.98003 * 1 2 3 29 29 H 1.07997 * 119.97385 * 0.03511 * 3 2 1 30 30 H 1.08004 * 119.94057 * 179.97438 * 4 3 2 31 31 H 1.08004 * 119.96863 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.02485 * 180.28289 * 6 5 4 33 33 H 1.08992 * 109.47338 * 300.00430 * 11 9 8 34 34 H 1.08995 * 109.46743 * 60.00566 * 11 9 8 35 35 H 1.08999 * 109.46815 * 180.02562 * 12 11 9 36 36 H 1.09005 * 109.47026 * 300.00252 * 12 11 9 37 37 H 1.09004 * 109.46735 * 179.97438 * 13 12 11 38 38 H 1.08992 * 109.47357 * 59.99881 * 13 12 11 39 39 H 1.08998 * 109.47735 * 300.00300 * 14 13 12 40 40 H 1.08998 * 109.47197 * 180.02562 * 14 13 12 41 41 H 0.96998 * 120.00328 * 24.98968 * 17 15 9 42 42 H 0.96995 * 120.00612 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2752 0.0008 -0.0005 6 6 3.5886 -1.1977 0.0049 7 6 2.2010 -1.2010 -0.0005 8 8 1.5232 -2.3789 -0.0005 9 6 2.2979 -3.5732 0.1252 10 1 3.1470 -3.3879 0.7829 11 6 2.8045 -4.0000 -1.2540 12 6 3.6333 -5.2790 -1.1194 13 6 2.7634 -6.3906 -0.5291 14 6 2.2568 -5.9638 0.8500 15 6 1.4284 -4.6850 0.7158 16 1 1.0675 -4.3810 1.6983 17 7 0.2871 -4.9341 -0.1683 18 6 -0.8660 -5.4723 0.3375 19 1 -0.9340 -5.7135 1.3880 20 6 -1.9477 -5.7078 -0.5000 21 7 -3.0562 -6.2246 -0.0138 22 14 -1.8300 -5.2914 -2.3172 23 1 -1.3144 -6.4680 -3.0623 24 1 -3.1760 -4.9313 -2.8307 25 1 -0.9059 -4.1439 -2.5032 26 1 -0.3633 -0.0002 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6585 2.1315 0.0006 30 1 4.1196 2.1328 -0.0010 31 1 5.3552 0.0039 -0.0005 32 1 4.1313 -2.1314 0.0095 33 1 1.9553 -4.1853 -1.9116 34 1 3.4238 -3.2078 -1.6746 35 1 3.9946 -5.5828 -2.1018 36 1 4.4826 -5.0941 -0.4615 37 1 3.3538 -7.3020 -0.4337 38 1 1.9143 -6.5755 -1.1869 39 1 3.1060 -5.7789 1.5079 40 1 1.6375 -6.7559 1.2707 41 1 0.3481 -4.7178 -1.1119 42 1 -3.8122 -6.3889 -0.5989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362012454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -13.178308 kcal Electronic energy + Delta-G solvation = -22141.236748 eV Core-core repulsion = 19086.191525 eV Total energy + Delta-G solvation = -3055.045223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37600 -38.50262 -36.44027 -33.69194 -32.66896 -31.26758 -30.11024 -29.61231 -28.42867 -26.56881 -23.56122 -23.04387 -21.91862 -21.33077 -21.24549 -18.56153 -17.82161 -17.79100 -15.97266 -15.58097 -15.23176 -14.74261 -14.52661 -14.35575 -13.97777 -13.89649 -13.23880 -13.02975 -12.87974 -12.74585 -12.35566 -12.11207 -12.03550 -11.95546 -11.81298 -11.32781 -11.21092 -11.01016 -10.90177 -10.84271 -10.47516 -10.32069 -10.26894 -10.05202 -9.58354 -9.50341 -8.89006 -8.73945 -7.90058 -7.21684 -5.72855 -3.06917 1.39065 1.55905 3.39773 3.44967 3.46255 3.49298 3.84659 4.63273 4.84372 4.89640 4.93869 4.97712 5.09794 5.18875 5.27188 5.35401 5.45189 5.49117 5.56442 5.58509 5.64717 5.73596 5.80576 5.86794 5.91415 5.95351 5.98309 6.03594 6.15150 6.27052 6.37300 6.42095 6.44997 6.53408 6.55914 6.65735 6.68510 6.78279 6.88059 6.96576 7.75727 8.03052 8.45845 9.24888 9.97487 10.17714 11.45740 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.006549 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.892768 B = 4274.725898 C = 5274.743079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.166 4.166 5 C -0.089 4.089 6 C -0.212 4.212 7 C 0.138 3.862 8 O -0.286 6.286 9 C 0.080 3.920 10 H 0.070 0.930 11 C -0.144 4.144 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.131 4.131 15 C 0.189 3.811 16 H 0.062 0.938 17 N -0.736 5.736 18 C -0.236 4.236 19 H 0.090 0.910 20 C 0.007 3.993 21 N -0.935 5.935 22 Si 0.876 3.124 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.275 1.275 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.363 0.637 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.959 10.553 -0.706 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.184 4.184 5 C -0.107 4.107 6 C -0.231 4.231 7 C 0.092 3.908 8 O -0.198 6.198 9 C 0.024 3.976 10 H 0.088 0.912 11 C -0.182 4.182 12 C -0.149 4.149 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.079 3.921 16 H 0.080 0.920 17 N -0.380 5.380 18 C -0.366 4.366 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.583 5.583 22 Si 0.707 3.293 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.201 1.201 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.197 0.803 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.539 10.411 -0.576 18.713 hybrid contribution 0.251 0.218 -1.371 1.411 sum 15.790 10.629 -1.947 19.134 Atomic orbital electron populations 1.20627 0.90349 1.02903 1.02512 1.19357 0.96753 0.90431 1.05441 1.20848 0.94067 0.96681 0.98828 1.20937 0.94201 0.97795 1.05482 1.20861 0.99387 0.92010 0.98489 1.21317 0.93302 0.99343 1.09127 1.19033 0.90383 0.86671 0.94722 1.86330 1.35375 1.11622 1.86486 1.22904 0.94261 0.83665 0.96819 0.91196 1.22074 1.00509 0.97934 0.97694 1.21469 0.97825 0.94934 1.00708 1.21462 0.99319 0.96709 0.97959 1.22099 0.98832 0.99882 0.96302 1.20214 0.87498 0.89771 0.94663 0.91965 1.42684 1.11984 1.76502 1.06795 1.19051 0.89235 1.32595 0.95727 0.89245 1.24593 0.95902 1.01175 0.97221 1.69688 1.03953 1.50157 1.34551 0.86658 0.76962 0.78295 0.87398 1.21220 1.21791 1.20108 0.91324 0.92172 0.90467 0.85832 0.86426 0.86341 0.85366 0.90704 0.91991 0.92073 0.92401 0.92782 0.90831 0.93315 0.90705 0.80279 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.79 36.01 0.35 -1.22 16 2 C -0.12 -1.78 5.89 -104.47 -0.62 -2.40 16 3 C -0.09 -1.07 9.70 -39.60 -0.38 -1.46 16 4 C -0.17 -1.90 10.04 -39.56 -0.40 -2.29 16 5 C -0.09 -1.05 10.04 -39.61 -0.40 -1.45 16 6 C -0.21 -2.88 8.24 -39.43 -0.32 -3.21 16 7 C 0.14 2.21 6.57 -39.22 -0.26 1.96 16 8 O -0.29 -5.21 8.71 -19.43 -0.17 -5.38 16 9 C 0.08 1.31 1.85 -26.73 -0.05 1.26 16 10 H 0.07 0.99 6.31 -51.93 -0.33 0.67 16 11 C -0.14 -2.17 5.01 -26.73 -0.13 -2.31 16 12 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 13 C -0.12 -1.79 5.76 -26.73 -0.15 -1.94 16 14 C -0.13 -2.15 5.61 -26.75 -0.15 -2.30 16 15 C 0.19 3.58 2.79 -67.95 -0.19 3.39 16 16 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 17 N -0.74 -17.11 3.94 -53.45 -0.21 -17.32 16 18 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 21 N -0.94 -29.42 13.97 55.49 0.78 -28.64 16 22 Si 0.88 22.38 27.74 -169.99 -4.71 17.67 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.73 8.09 -51.93 -0.42 0.32 16 28 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.13 1.58 5.43 -52.48 -0.29 1.30 16 33 H 0.07 1.31 6.50 -51.93 -0.34 0.97 16 34 H 0.06 0.85 6.91 -51.93 -0.36 0.49 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.32 7.60 -51.93 -0.39 0.93 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.36 8.50 3.92 -40.82 -0.16 8.34 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -31.16 327.99 -8.98 -40.14 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.49 Total: 8.82 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -3.11 Total: -20.22 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.56 Total: -45.97 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.17 Total: -5.38 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.16 -8.98 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.966 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds