Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38162 * 120.02894 * 2 1 4 4 C 1.38251 * 120.05138 * 180.02562 * 3 2 1 5 5 C 1.38283 * 120.11132 * 359.97438 * 4 3 2 6 6 C 1.38120 * 120.05743 * 359.76644 * 5 4 3 7 7 C 1.38712 * 120.02181 * 180.02562 * 2 1 3 8 8 O 1.35903 * 120.05974 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99789 * 185.69124 * 8 7 2 10 10 H 1.08998 * 109.47228 * 35.10840 * 9 8 7 11 11 C 1.52998 * 109.47186 * 275.09986 * 9 8 7 12 12 C 1.53004 * 109.46865 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46793 * 60.00370 * 12 11 9 14 14 C 1.52998 * 109.47113 * 299.99478 * 13 12 11 15 15 C 1.53002 * 109.46371 * 155.10022 * 9 8 7 16 16 H 1.08999 * 109.47785 * 299.99963 * 15 9 8 17 17 N 1.46502 * 109.47173 * 60.00698 * 15 9 8 18 18 C 1.36932 * 119.99876 * 204.99664 * 17 15 9 19 19 H 1.08001 * 120.00456 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00066 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00439 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00087 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47247 * 89.99889 * 22 20 18 24 24 H 1.48500 * 109.47452 * 209.99966 * 22 20 18 25 25 H 1.48504 * 109.46965 * 330.00021 * 22 20 18 26 26 H 1.08993 * 109.47293 * 269.98813 * 1 2 3 27 27 H 1.09005 * 109.46803 * 29.98241 * 1 2 3 28 28 H 1.08998 * 109.47147 * 149.98003 * 1 2 3 29 29 H 1.07997 * 119.97385 * 0.03511 * 3 2 1 30 30 H 1.08004 * 119.94057 * 179.97438 * 4 3 2 31 31 H 1.08004 * 119.96863 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.02485 * 180.28289 * 6 5 4 33 33 H 1.08992 * 109.47338 * 300.00430 * 11 9 8 34 34 H 1.08995 * 109.46743 * 60.00566 * 11 9 8 35 35 H 1.08999 * 109.46815 * 180.02562 * 12 11 9 36 36 H 1.09005 * 109.47026 * 300.00252 * 12 11 9 37 37 H 1.09004 * 109.46735 * 179.97438 * 13 12 11 38 38 H 1.08992 * 109.47357 * 59.99881 * 13 12 11 39 39 H 1.08998 * 109.47735 * 300.00300 * 14 13 12 40 40 H 1.08998 * 109.47197 * 180.02562 * 14 13 12 41 41 H 0.96998 * 120.00328 * 24.98968 * 17 15 9 42 42 H 0.96995 * 120.00612 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2752 0.0008 -0.0005 6 6 3.5886 -1.1977 0.0049 7 6 2.2010 -1.2010 -0.0005 8 8 1.5232 -2.3789 -0.0005 9 6 2.2979 -3.5732 0.1252 10 1 3.1470 -3.3879 0.7829 11 6 2.8045 -4.0000 -1.2540 12 6 3.6333 -5.2790 -1.1194 13 6 2.7634 -6.3906 -0.5291 14 6 2.2568 -5.9638 0.8500 15 6 1.4284 -4.6850 0.7158 16 1 1.0675 -4.3810 1.6983 17 7 0.2871 -4.9341 -0.1683 18 6 -0.8660 -5.4723 0.3375 19 1 -0.9340 -5.7135 1.3880 20 6 -1.9477 -5.7078 -0.5000 21 7 -3.0562 -6.2246 -0.0138 22 14 -1.8300 -5.2914 -2.3172 23 1 -1.3144 -6.4680 -3.0623 24 1 -3.1760 -4.9313 -2.8307 25 1 -0.9059 -4.1439 -2.5032 26 1 -0.3633 -0.0002 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6585 2.1315 0.0006 30 1 4.1196 2.1328 -0.0010 31 1 5.3552 0.0039 -0.0005 32 1 4.1313 -2.1314 0.0095 33 1 1.9553 -4.1853 -1.9116 34 1 3.4238 -3.2078 -1.6746 35 1 3.9946 -5.5828 -2.1018 36 1 4.4826 -5.0941 -0.4615 37 1 3.3538 -7.3020 -0.4337 38 1 1.9143 -6.5755 -1.1869 39 1 3.1060 -5.7789 1.5079 40 1 1.6375 -6.7559 1.2707 41 1 0.3481 -4.7178 -1.1119 42 1 -3.8122 -6.3889 -0.5989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362012454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -30.859859 kcal Electronic energy + Delta-G solvation = -22142.003477 eV Core-core repulsion = 19086.191525 eV Total energy + Delta-G solvation = -3055.811952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54165 -39.70119 -37.66137 -35.53645 -33.70228 -33.20911 -31.23666 -30.87638 -29.93329 -27.63417 -25.43825 -24.26311 -23.30369 -22.44597 -22.29681 -19.97908 -19.87945 -18.89587 -17.23702 -16.75712 -16.53571 -16.24119 -15.95949 -15.64843 -15.35532 -15.10508 -14.79430 -14.35076 -14.19143 -13.99804 -13.77736 -13.66018 -13.29864 -13.16824 -13.06322 -12.91169 -12.48267 -12.43178 -12.23114 -12.20509 -12.05438 -11.85022 -11.70205 -11.45336 -11.30562 -10.97693 -10.85242 -9.71285 -9.28300 -8.96805 -8.01761 -5.31516 0.42470 0.56312 1.32157 1.35131 1.42007 2.31706 2.46466 2.86964 3.29859 3.55329 3.69032 3.87017 3.91106 3.96389 4.04394 4.18303 4.23370 4.28277 4.35184 4.43995 4.53303 4.58247 4.66302 4.71770 4.76225 4.78147 4.79309 4.97967 5.01937 5.05903 5.15780 5.25331 5.30803 5.33939 5.46105 5.50172 5.58208 5.59957 5.64783 5.77893 5.99529 6.22287 6.63466 7.09381 7.86357 8.05413 9.20481 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.006549 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.892768 B = 4274.725898 C = 5274.743079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.146 4.146 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.087 4.087 6 C -0.215 4.215 7 C 0.105 3.895 8 O -0.321 6.321 9 C 0.086 3.914 10 H 0.097 0.903 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.116 4.116 14 C -0.124 4.124 15 C 0.178 3.822 16 H 0.039 0.961 17 N -0.737 5.737 18 C -0.215 4.215 19 H 0.057 0.943 20 C -0.060 4.060 21 N -0.985 5.985 22 Si 0.943 3.057 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.263 1.263 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.364 0.636 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.011 12.457 -1.714 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.147 4.147 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.234 4.234 7 C 0.060 3.940 8 O -0.235 6.235 9 C 0.030 3.970 10 H 0.115 0.885 11 C -0.177 4.177 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.069 3.931 16 H 0.057 0.943 17 N -0.381 5.381 18 C -0.346 4.346 19 H 0.075 0.925 20 C -0.251 4.251 21 N -0.636 5.636 22 Si 0.771 3.229 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.189 1.189 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.198 0.802 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.659 12.335 -1.576 23.262 hybrid contribution -0.927 -0.271 -0.917 1.332 sum 18.732 12.064 -2.493 22.420 Atomic orbital electron populations 1.20550 0.91231 1.02195 1.01994 1.19579 0.96608 0.91450 1.07049 1.21154 0.94959 0.96508 0.97883 1.21380 0.93821 0.99215 1.03425 1.21291 1.01073 0.91300 0.96848 1.21507 0.92198 1.00853 1.08841 1.19352 0.91700 0.85995 0.96960 1.86273 1.37002 1.12797 1.87397 1.22819 0.93843 0.82321 0.98014 0.88499 1.22052 0.99938 0.99612 0.96147 1.21460 0.97682 0.92665 1.02272 1.21450 0.98895 0.98837 0.96194 1.21972 0.99110 0.97200 0.98084 1.20487 0.87123 0.92451 0.92997 0.94330 1.42657 1.11933 1.76168 1.07381 1.19016 0.90678 1.30677 0.94262 0.92492 1.25298 0.95745 1.02356 1.01738 1.69857 1.04943 1.52723 1.36112 0.85582 0.76686 0.78586 0.82023 1.20212 1.22346 1.18857 0.91844 0.89902 0.94013 0.83589 0.83203 0.83102 0.84098 0.93760 0.90106 0.90291 0.89322 0.90459 0.94257 0.89633 0.93538 0.80176 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.10 9.79 71.24 0.70 -2.40 16 2 C -0.15 -4.26 5.89 -19.77 -0.12 -4.38 16 3 C -0.09 -1.93 9.70 22.25 0.22 -1.72 16 4 C -0.16 -2.99 10.04 22.28 0.22 -2.76 16 5 C -0.09 -1.67 10.04 22.25 0.22 -1.45 16 6 C -0.22 -5.20 8.24 22.37 0.18 -5.02 16 7 C 0.11 3.27 6.57 22.51 0.15 3.42 16 8 O -0.32 -11.82 8.71 -92.45 -0.81 -12.63 16 9 C 0.09 2.72 1.85 30.59 0.06 2.78 16 10 H 0.10 2.49 6.31 -2.39 -0.02 2.47 16 11 C -0.14 -3.91 5.01 30.59 0.15 -3.75 16 12 C -0.10 -2.34 5.92 30.60 0.18 -2.16 16 13 C -0.12 -3.33 5.76 30.59 0.18 -3.15 16 14 C -0.12 -3.97 5.61 30.58 0.17 -3.80 16 15 C 0.18 6.85 2.79 44.98 0.13 6.98 16 16 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 17 N -0.74 -35.43 3.94 -323.01 -1.27 -36.70 16 18 C -0.22 -12.57 10.41 84.03 0.87 -11.69 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 20 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 21 N -0.98 -64.80 13.97 21.65 0.30 -64.50 16 22 Si 0.94 47.96 27.74 68.60 1.90 49.86 16 23 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 25 H -0.26 -12.70 6.52 99.48 0.65 -12.05 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.00 8.09 -2.38 -0.02 1.98 16 28 H 0.04 1.52 7.53 -2.39 -0.02 1.50 16 29 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.14 2.91 5.43 -2.91 -0.02 2.90 16 33 H 0.04 1.51 6.50 -2.39 -0.02 1.49 16 34 H 0.08 1.96 6.91 -2.39 -0.02 1.94 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.04 1.39 7.60 -2.39 -0.02 1.37 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.36 17.39 3.92 -92.71 -0.36 17.03 16 42 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -72.21 327.99 4.49 -67.73 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.58 Total: 28.55 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.78 Total: -32.31 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -0.97 Total: -101.20 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.81 Total: -12.63 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.90 Total: 49.86 kcal Total: -72.21 4.49 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.865 kcal (2) G-P(sol) polarization free energy of solvation -72.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds