Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38169 * 120.02335 * 2 1 4 4 C 1.38242 * 120.05521 * 180.30133 * 3 2 1 5 5 C 1.38292 * 120.11099 * 359.67692 * 4 3 2 6 6 C 1.38119 * 120.05725 * 0.02562 * 5 4 3 7 7 C 1.38705 * 120.03222 * 179.68169 * 2 1 3 8 8 O 1.35900 * 120.05525 * 359.97438 * 7 2 1 9 9 C 1.42906 * 116.99851 * 174.23682 * 8 7 2 10 10 H 1.09000 * 109.47094 * 325.03660 * 9 8 7 11 11 C 1.52994 * 109.47164 * 85.03686 * 9 8 7 12 12 C 1.53002 * 109.47304 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47020 * 300.00395 * 12 11 9 14 14 C 1.53001 * 109.47298 * 59.99916 * 13 12 11 15 15 C 1.53002 * 109.46803 * 205.03863 * 9 8 7 16 16 H 1.08997 * 109.47443 * 59.99467 * 15 9 8 17 17 N 1.46501 * 109.46858 * 299.99869 * 15 9 8 18 18 C 1.36942 * 119.99896 * 155.00577 * 17 15 9 19 19 H 1.08001 * 120.00071 * 359.97438 * 18 17 15 20 20 C 1.38808 * 119.99932 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00107 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00126 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47018 * 90.00410 * 22 20 18 24 24 H 1.48499 * 109.47334 * 210.00131 * 22 20 18 25 25 H 1.48499 * 109.47063 * 330.00384 * 22 20 18 26 26 H 1.09007 * 109.47059 * 270.31836 * 1 2 3 27 27 H 1.08998 * 109.47663 * 30.32074 * 1 2 3 28 28 H 1.08999 * 109.46879 * 150.32269 * 1 2 3 29 29 H 1.08003 * 119.97447 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.94794 * 179.70498 * 4 3 2 31 31 H 1.08002 * 119.97180 * 180.02562 * 5 4 3 32 32 H 1.07993 * 120.03518 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47196 * 299.99917 * 11 9 8 34 34 H 1.09008 * 109.47375 * 59.99961 * 11 9 8 35 35 H 1.08997 * 109.47697 * 179.97438 * 12 11 9 36 36 H 1.09008 * 109.46648 * 59.99869 * 12 11 9 37 37 H 1.09000 * 109.47130 * 299.99470 * 13 12 11 38 38 H 1.09003 * 109.46851 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.47405 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47394 * 59.99715 * 14 13 12 41 41 H 0.96997 * 120.00373 * 334.99888 * 17 15 9 42 42 H 0.96994 * 119.99892 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1971 -0.0063 5 6 4.2752 0.0012 -0.0059 6 6 3.5888 -1.1974 0.0003 7 6 2.2012 -1.2008 0.0067 8 8 1.5235 -2.3788 0.0137 9 6 2.2980 -3.5736 -0.1075 10 1 3.1474 -3.3907 -0.7657 11 6 2.8044 -3.9954 1.2732 12 6 3.6331 -5.2750 1.1435 13 6 2.7633 -6.3887 0.5570 14 6 2.2570 -5.9668 -0.8238 15 6 1.4286 -4.6875 -0.6942 16 1 1.0678 -4.3869 -1.6779 17 7 0.2871 -4.9332 0.1905 18 6 -0.8660 -5.4732 -0.3136 19 1 -0.9340 -5.7175 -1.3634 20 6 -1.9479 -5.7055 0.5246 21 7 -3.0564 -6.2240 0.0400 22 14 -1.8305 -5.2822 2.3402 23 1 -2.2837 -3.8842 2.5528 24 1 -2.6924 -6.2060 3.1206 25 1 -0.4222 -5.4200 2.7906 26 1 -0.3633 0.0057 1.0277 27 1 -0.3634 0.8870 -0.5188 28 1 -0.3633 -0.8929 -0.5088 29 1 1.6583 2.1316 -0.0004 30 1 4.1193 2.1332 -0.0111 31 1 5.3552 0.0044 -0.0104 32 1 4.1315 -2.1311 0.0011 33 1 3.4237 -3.2018 1.6912 34 1 1.9550 -4.1783 1.9315 35 1 3.9943 -5.5753 2.1271 36 1 4.4825 -5.0925 0.4851 37 1 1.9139 -6.5712 1.2153 38 1 3.3539 -7.3002 0.4642 39 1 1.6369 -6.7600 -1.2414 40 1 3.1063 -5.7844 -1.4821 41 1 0.3480 -4.7135 1.1333 42 1 -3.8122 -6.3866 0.6258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362012455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -13.349323 kcal Electronic energy + Delta-G solvation = -22139.916285 eV Core-core repulsion = 19084.863647 eV Total energy + Delta-G solvation = -3055.052639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37797 -38.50245 -36.44225 -33.68931 -32.66925 -31.26663 -30.11140 -29.61032 -28.42957 -26.56868 -23.56209 -23.04252 -21.91726 -21.33289 -21.24722 -18.55653 -17.82219 -17.79193 -15.97151 -15.58377 -15.24379 -14.74029 -14.50782 -14.37095 -13.97995 -13.91126 -13.19122 -13.01977 -12.92344 -12.75228 -12.36216 -12.09219 -12.05132 -11.93467 -11.81641 -11.34979 -11.20525 -10.99543 -10.90051 -10.84027 -10.47327 -10.30821 -10.23685 -10.09161 -9.59472 -9.50054 -8.88634 -8.73997 -7.90601 -7.21595 -5.73019 -3.07038 1.38889 1.55758 3.39364 3.43427 3.47340 3.49320 3.84190 4.63107 4.84299 4.89364 4.94140 4.97799 5.09762 5.19086 5.27496 5.35384 5.45346 5.49209 5.55735 5.58925 5.65065 5.73681 5.81125 5.87069 5.91800 5.94728 5.98302 6.03866 6.15185 6.27325 6.37550 6.42267 6.44945 6.53565 6.55843 6.65826 6.68483 6.78650 6.88586 6.96418 7.75244 8.02995 8.45782 9.24801 9.97426 10.17640 11.45585 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.006548 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.948496 B = 4275.109569 C = 5275.330059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.166 4.166 5 C -0.089 4.089 6 C -0.212 4.212 7 C 0.138 3.862 8 O -0.286 6.286 9 C 0.080 3.920 10 H 0.070 0.930 11 C -0.144 4.144 12 C -0.111 4.111 13 C -0.117 4.117 14 C -0.131 4.131 15 C 0.189 3.811 16 H 0.063 0.937 17 N -0.736 5.736 18 C -0.236 4.236 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.880 3.120 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.279 1.279 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.363 0.637 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 10.549 0.650 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.184 4.184 5 C -0.108 4.108 6 C -0.231 4.231 7 C 0.092 3.908 8 O -0.198 6.198 9 C 0.023 3.977 10 H 0.088 0.912 11 C -0.182 4.182 12 C -0.149 4.149 13 C -0.155 4.155 14 C -0.171 4.171 15 C 0.078 3.922 16 H 0.081 0.919 17 N -0.380 5.380 18 C -0.366 4.366 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.583 5.583 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.205 1.205 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.197 0.803 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.518 10.403 0.518 18.690 hybrid contribution 0.268 0.214 1.398 1.439 sum 15.787 10.617 1.915 19.121 Atomic orbital electron populations 1.20635 0.90341 1.03086 1.02392 1.19356 0.96752 0.90428 1.05428 1.20849 0.94067 0.96689 0.98821 1.20938 0.94202 0.97796 1.05462 1.20863 0.99389 0.92010 0.98491 1.21318 0.93304 0.99339 1.09099 1.19032 0.90383 0.86654 0.94762 1.86328 1.35420 1.11598 1.86495 1.22908 0.94269 0.83648 0.96841 0.91186 1.22074 1.00537 0.97919 0.97673 1.21463 0.97807 0.94938 1.00695 1.21468 0.99349 0.96688 0.97964 1.22104 0.98830 0.99910 0.96295 1.20217 0.87483 0.89775 0.94679 0.91934 1.42681 1.11947 1.76529 1.06820 1.19051 0.89010 1.32818 0.95742 0.89241 1.24598 0.95909 1.01176 0.97235 1.69696 1.03938 1.50141 1.34568 0.86621 0.76985 0.78086 0.87232 1.21049 1.21905 1.20511 0.91547 0.92090 0.90263 0.85834 0.86426 0.86341 0.85363 0.91999 0.90672 0.92101 0.92422 0.90781 0.92814 0.90720 0.93317 0.80271 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.79 36.00 0.35 -1.23 16 2 C -0.12 -1.77 5.89 -104.48 -0.62 -2.39 16 3 C -0.09 -1.07 9.70 -39.61 -0.38 -1.45 16 4 C -0.17 -1.89 10.04 -39.56 -0.40 -2.28 16 5 C -0.09 -1.05 10.04 -39.60 -0.40 -1.45 16 6 C -0.21 -2.87 8.25 -39.43 -0.33 -3.19 16 7 C 0.14 2.20 6.57 -39.22 -0.26 1.94 16 8 O -0.29 -5.18 8.71 -19.43 -0.17 -5.35 16 9 C 0.08 1.30 1.85 -26.73 -0.05 1.25 16 10 H 0.07 0.99 6.31 -51.93 -0.33 0.67 16 11 C -0.14 -2.18 5.01 -26.73 -0.13 -2.31 16 12 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 13 C -0.12 -1.81 5.76 -26.73 -0.15 -1.96 16 14 C -0.13 -2.16 5.61 -26.75 -0.15 -2.31 16 15 C 0.19 3.58 2.79 -67.95 -0.19 3.39 16 16 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 17 N -0.74 -17.12 3.94 -53.45 -0.21 -17.33 16 18 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.94 -29.40 13.97 55.49 0.78 -28.63 16 22 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 23 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.08 1.35 7.53 -51.93 -0.39 0.95 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.58 5.43 -52.49 -0.29 1.29 16 33 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 34 H 0.07 1.32 6.51 -51.92 -0.34 0.99 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.07 1.36 7.60 -51.93 -0.39 0.96 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.36 8.52 3.92 -40.82 -0.16 8.36 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -31.05 328.01 -8.98 -40.03 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.49 Total: 8.84 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.11 Total: -20.27 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.56 Total: -45.96 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.17 Total: -5.35 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.05 -8.98 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.681 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds