Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38169 * 120.02335 * 2 1 4 4 C 1.38242 * 120.05521 * 180.30133 * 3 2 1 5 5 C 1.38292 * 120.11099 * 359.67692 * 4 3 2 6 6 C 1.38119 * 120.05725 * 0.02562 * 5 4 3 7 7 C 1.38705 * 120.03222 * 179.68169 * 2 1 3 8 8 O 1.35900 * 120.05525 * 359.97438 * 7 2 1 9 9 C 1.42906 * 116.99851 * 174.23682 * 8 7 2 10 10 H 1.09000 * 109.47094 * 325.03660 * 9 8 7 11 11 C 1.52994 * 109.47164 * 85.03686 * 9 8 7 12 12 C 1.53002 * 109.47304 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47020 * 300.00395 * 12 11 9 14 14 C 1.53001 * 109.47298 * 59.99916 * 13 12 11 15 15 C 1.53002 * 109.46803 * 205.03863 * 9 8 7 16 16 H 1.08997 * 109.47443 * 59.99467 * 15 9 8 17 17 N 1.46501 * 109.46858 * 299.99869 * 15 9 8 18 18 C 1.36942 * 119.99896 * 155.00577 * 17 15 9 19 19 H 1.08001 * 120.00071 * 359.97438 * 18 17 15 20 20 C 1.38808 * 119.99932 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00107 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00126 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47018 * 90.00410 * 22 20 18 24 24 H 1.48499 * 109.47334 * 210.00131 * 22 20 18 25 25 H 1.48499 * 109.47063 * 330.00384 * 22 20 18 26 26 H 1.09007 * 109.47059 * 270.31836 * 1 2 3 27 27 H 1.08998 * 109.47663 * 30.32074 * 1 2 3 28 28 H 1.08999 * 109.46879 * 150.32269 * 1 2 3 29 29 H 1.08003 * 119.97447 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.94794 * 179.70498 * 4 3 2 31 31 H 1.08002 * 119.97180 * 180.02562 * 5 4 3 32 32 H 1.07993 * 120.03518 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47196 * 299.99917 * 11 9 8 34 34 H 1.09008 * 109.47375 * 59.99961 * 11 9 8 35 35 H 1.08997 * 109.47697 * 179.97438 * 12 11 9 36 36 H 1.09008 * 109.46648 * 59.99869 * 12 11 9 37 37 H 1.09000 * 109.47130 * 299.99470 * 13 12 11 38 38 H 1.09003 * 109.46851 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.47405 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47394 * 59.99715 * 14 13 12 41 41 H 0.96997 * 120.00373 * 334.99888 * 17 15 9 42 42 H 0.96994 * 119.99892 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1971 -0.0063 5 6 4.2752 0.0012 -0.0059 6 6 3.5888 -1.1974 0.0003 7 6 2.2012 -1.2008 0.0067 8 8 1.5235 -2.3788 0.0137 9 6 2.2980 -3.5736 -0.1075 10 1 3.1474 -3.3907 -0.7657 11 6 2.8044 -3.9954 1.2732 12 6 3.6331 -5.2750 1.1435 13 6 2.7633 -6.3887 0.5570 14 6 2.2570 -5.9668 -0.8238 15 6 1.4286 -4.6875 -0.6942 16 1 1.0678 -4.3869 -1.6779 17 7 0.2871 -4.9332 0.1905 18 6 -0.8660 -5.4732 -0.3136 19 1 -0.9340 -5.7175 -1.3634 20 6 -1.9479 -5.7055 0.5246 21 7 -3.0564 -6.2240 0.0400 22 14 -1.8305 -5.2822 2.3402 23 1 -2.2837 -3.8842 2.5528 24 1 -2.6924 -6.2060 3.1206 25 1 -0.4222 -5.4200 2.7906 26 1 -0.3633 0.0057 1.0277 27 1 -0.3634 0.8870 -0.5188 28 1 -0.3633 -0.8929 -0.5088 29 1 1.6583 2.1316 -0.0004 30 1 4.1193 2.1332 -0.0111 31 1 5.3552 0.0044 -0.0104 32 1 4.1315 -2.1311 0.0011 33 1 3.4237 -3.2018 1.6912 34 1 1.9550 -4.1783 1.9315 35 1 3.9943 -5.5753 2.1271 36 1 4.4825 -5.0925 0.4851 37 1 1.9139 -6.5712 1.2153 38 1 3.3539 -7.3002 0.4642 39 1 1.6369 -6.7600 -1.2414 40 1 3.1063 -5.7844 -1.4821 41 1 0.3480 -4.7135 1.1333 42 1 -3.8122 -6.3866 0.6258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362012455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = -30.924273 kcal Electronic energy + Delta-G solvation = -22140.678392 eV Core-core repulsion = 19084.863647 eV Total energy + Delta-G solvation = -3055.814746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54078 -39.70105 -37.66105 -35.53518 -33.70030 -33.20821 -31.23766 -30.87397 -29.93490 -27.63181 -25.43876 -24.26220 -23.30507 -22.44672 -22.29760 -19.97558 -19.87931 -18.89403 -17.23266 -16.76601 -16.53612 -16.23119 -15.96918 -15.63826 -15.37128 -15.11084 -14.79123 -14.29857 -14.21830 -13.98888 -13.81676 -13.66473 -13.27893 -13.17676 -13.04109 -12.92792 -12.48893 -12.45065 -12.21566 -12.15755 -12.05974 -11.85745 -11.70174 -11.45807 -11.30783 -11.00089 -10.83883 -9.71005 -9.28241 -8.96874 -8.01819 -5.31562 0.42635 0.56566 1.31473 1.35790 1.41164 2.31797 2.46409 2.86932 3.29900 3.55393 3.69151 3.86862 3.91183 3.96560 4.04511 4.18427 4.23425 4.28238 4.35135 4.44321 4.53428 4.58108 4.66292 4.72090 4.75758 4.78396 4.79099 4.97872 5.02149 5.05693 5.15597 5.25042 5.30607 5.34085 5.46003 5.50309 5.58180 5.60022 5.65014 5.77929 5.99605 6.22315 6.63416 7.09373 7.86317 8.05337 9.20419 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.006548 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.948496 B = 4275.109569 C = 5275.330059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.146 4.146 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.087 4.087 6 C -0.215 4.215 7 C 0.106 3.894 8 O -0.320 6.320 9 C 0.087 3.913 10 H 0.098 0.902 11 C -0.139 4.139 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.124 4.124 15 C 0.178 3.822 16 H 0.039 0.961 17 N -0.738 5.738 18 C -0.215 4.215 19 H 0.057 0.943 20 C -0.060 4.060 21 N -0.985 5.985 22 Si 0.944 3.056 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.257 1.257 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.364 0.636 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.046 12.440 1.645 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.146 4.146 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.234 4.234 7 C 0.060 3.940 8 O -0.234 6.234 9 C 0.030 3.970 10 H 0.115 0.885 11 C -0.177 4.177 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.069 3.931 16 H 0.057 0.943 17 N -0.381 5.381 18 C -0.346 4.346 19 H 0.075 0.925 20 C -0.251 4.251 21 N -0.636 5.636 22 Si 0.772 3.228 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.182 1.182 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.198 0.802 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.697 12.312 1.505 23.278 hybrid contribution -0.932 -0.267 0.944 1.353 sum 18.766 12.045 2.449 22.433 Atomic orbital electron populations 1.20556 0.91249 1.02373 1.01854 1.19572 0.96582 0.91452 1.07041 1.21152 0.94959 0.96515 0.97888 1.21378 0.93820 0.99215 1.03423 1.21293 1.01071 0.91304 0.96846 1.21507 0.92203 1.00842 1.08819 1.19346 0.91688 0.85978 0.96967 1.86273 1.37006 1.12743 1.87389 1.22816 0.93850 0.82307 0.98007 0.88481 1.22051 0.99950 0.99587 0.96146 1.21457 0.97697 0.92695 1.02242 1.21451 0.98874 0.98841 0.96202 1.21978 0.99126 0.97247 0.98046 1.20490 0.87107 0.92446 0.93031 0.94261 1.42651 1.11914 1.76182 1.07396 1.19017 0.90469 1.30855 0.94287 0.92483 1.25300 0.95754 1.02364 1.01731 1.69863 1.04931 1.52717 1.36120 0.85576 0.77982 0.77286 0.81937 1.21284 1.22070 1.18155 0.92102 0.89850 0.93789 0.83616 0.83221 0.83113 0.84091 0.90056 0.93759 0.90382 0.89300 0.94333 0.90491 0.93555 0.89613 0.80178 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.11 9.79 71.24 0.70 -2.42 16 2 C -0.15 -4.23 5.89 -19.77 -0.12 -4.35 16 3 C -0.09 -1.93 9.70 22.25 0.22 -1.71 16 4 C -0.16 -2.97 10.04 22.28 0.22 -2.75 16 5 C -0.09 -1.66 10.04 22.25 0.22 -1.44 16 6 C -0.22 -5.16 8.25 22.37 0.18 -4.98 16 7 C 0.11 3.26 6.57 22.51 0.15 3.41 16 8 O -0.32 -11.70 8.71 -92.43 -0.80 -12.50 16 9 C 0.09 2.71 1.85 30.59 0.06 2.77 16 10 H 0.10 2.48 6.31 -2.39 -0.02 2.46 16 11 C -0.14 -3.90 5.01 30.59 0.15 -3.75 16 12 C -0.10 -2.36 5.92 30.60 0.18 -2.18 16 13 C -0.12 -3.35 5.76 30.60 0.18 -3.17 16 14 C -0.12 -3.99 5.61 30.58 0.17 -3.82 16 15 C 0.18 6.83 2.79 44.98 0.13 6.96 16 16 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 17 N -0.74 -35.38 3.94 -323.00 -1.27 -36.66 16 18 C -0.22 -12.56 10.41 84.03 0.87 -11.68 16 19 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 20 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 21 N -0.98 -64.80 13.97 21.65 0.30 -64.49 16 22 Si 0.94 48.01 27.74 68.60 1.90 49.91 16 23 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 25 H -0.26 -11.95 6.52 99.48 0.65 -11.30 16 26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 28 H 0.04 1.59 7.53 -2.39 -0.02 1.58 16 29 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.14 2.89 5.43 -2.91 -0.02 2.88 16 33 H 0.08 1.96 6.92 -2.39 -0.02 1.95 16 34 H 0.04 1.51 6.51 -2.38 -0.02 1.50 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.04 1.38 7.60 -2.39 -0.02 1.36 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.36 17.36 3.92 -92.71 -0.36 17.00 16 42 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -72.01 328.01 4.49 -67.52 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.58 Total: 28.55 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.78 Total: -32.32 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -0.97 Total: -101.15 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.80 Total: -12.50 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.90 Total: 49.91 kcal Total: -72.01 4.49 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.595 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds