Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38163 * 120.02882 * 2 1 4 4 C 1.38237 * 120.05540 * 180.02562 * 3 2 1 5 5 C 1.38292 * 120.11523 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.04879 * 359.67821 * 5 4 3 7 7 C 1.38708 * 120.02536 * 180.02562 * 2 1 3 8 8 O 1.35907 * 120.05803 * 359.97438 * 7 2 1 9 9 C 1.42894 * 117.00184 * 185.69453 * 8 7 2 10 10 H 1.09002 * 109.46934 * 35.13843 * 9 8 7 11 11 C 1.53003 * 109.47262 * 275.14218 * 9 8 7 12 12 C 1.53001 * 109.47309 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.46972 * 59.99997 * 12 11 9 14 14 C 1.53006 * 109.47008 * 299.99771 * 13 12 11 15 15 C 1.52992 * 109.47619 * 155.14062 * 9 8 7 16 16 H 1.09002 * 109.47147 * 59.99911 * 15 9 8 17 17 N 1.46506 * 109.47129 * 300.00536 * 15 9 8 18 18 C 1.36936 * 120.00481 * 154.99699 * 17 15 9 19 19 H 1.08000 * 119.99671 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00259 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00074 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99994 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47062 * 89.99833 * 22 20 18 24 24 H 1.48490 * 109.47217 * 210.00314 * 22 20 18 25 25 H 1.48501 * 109.47152 * 330.00415 * 22 20 18 26 26 H 1.09001 * 109.47370 * 269.97375 * 1 2 3 27 27 H 1.09002 * 109.47025 * 29.97356 * 1 2 3 28 28 H 1.09006 * 109.47183 * 149.97578 * 1 2 3 29 29 H 1.08007 * 119.97213 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.94479 * 180.02562 * 4 3 2 31 31 H 1.07998 * 119.97290 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.02689 * 180.32307 * 6 5 4 33 33 H 1.09005 * 109.46885 * 59.99753 * 11 9 8 34 34 H 1.09000 * 109.47129 * 300.00134 * 11 9 8 35 35 H 1.08995 * 109.47188 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.47014 * 299.99702 * 12 11 9 37 37 H 1.09002 * 109.47491 * 59.99998 * 13 12 11 38 38 H 1.09005 * 109.47223 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.46786 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47469 * 299.99966 * 14 13 12 41 41 H 0.97000 * 119.99753 * 334.99143 * 17 15 9 42 42 H 0.96994 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1968 -0.0005 5 6 4.2752 0.0009 -0.0016 6 6 3.5886 -1.1976 0.0046 7 6 2.2011 -1.2009 -0.0005 8 8 1.5233 -2.3789 -0.0005 9 6 2.2978 -3.5731 0.1252 10 1 3.1467 -3.3879 0.7835 11 6 2.8054 -3.9994 -1.2538 12 6 3.6353 -5.2777 -1.1190 13 6 2.7662 -6.3901 -0.5292 14 6 2.2587 -5.9638 0.8499 15 6 1.4284 -4.6853 0.7148 16 1 0.5795 -4.8705 0.0566 17 7 0.9423 -4.2771 2.0352 18 6 -0.2121 -4.8166 2.5369 19 1 -0.7644 -5.5427 1.9589 20 6 -0.6723 -4.4302 3.7881 21 7 -1.7821 -4.9483 4.2700 22 14 0.2835 -3.1748 4.7882 23 1 -0.2016 -1.8096 4.4627 24 1 0.0838 -3.4392 6.2356 25 1 1.7284 -3.2777 4.4610 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6584 2.1316 0.0004 30 1 4.1195 2.1329 -0.0001 31 1 5.3552 0.0041 -0.0024 32 1 4.1313 -2.1313 0.0090 33 1 3.4249 -3.2070 -1.6738 34 1 1.9566 -4.1845 -1.9121 35 1 3.9972 -5.5812 -2.1013 36 1 4.4841 -5.0921 -0.4609 37 1 1.9173 -6.5757 -1.1873 38 1 3.3575 -7.3008 -0.4328 39 1 1.6399 -6.7566 1.2703 40 1 3.1075 -5.7783 1.5081 41 1 1.4383 -3.6248 2.5542 42 1 -2.1035 -4.6786 5.1445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362012456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = -16.935815 kcal Electronic energy + Delta-G solvation = -22050.496080 eV Core-core repulsion = 18995.287919 eV Total energy + Delta-G solvation = -3055.208161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33924 -38.39454 -36.35736 -34.16055 -32.65004 -31.38516 -30.13164 -29.59861 -28.20537 -26.54317 -23.60752 -23.16879 -21.59590 -21.27339 -20.85325 -19.64228 -17.84900 -17.54389 -16.02340 -15.55386 -15.19167 -14.86820 -14.47709 -14.31577 -13.91039 -13.54677 -13.28351 -13.22138 -13.00106 -12.76889 -12.53044 -12.35504 -12.08959 -11.95496 -11.43245 -11.33747 -11.18981 -11.06094 -10.96630 -10.84661 -10.59519 -10.40762 -10.29768 -10.03550 -9.74614 -9.54069 -8.90667 -8.70430 -7.87127 -7.24602 -5.74157 -3.09045 1.42743 1.59334 3.39847 3.44255 3.47269 3.48758 3.88715 4.62406 4.79467 4.84029 4.92498 4.94828 5.08984 5.12874 5.28996 5.38104 5.40645 5.44179 5.52946 5.59082 5.63930 5.73405 5.76957 5.81690 5.83439 5.95241 5.99573 6.00593 6.13205 6.23282 6.31422 6.36022 6.43355 6.43883 6.50185 6.58412 6.67092 6.76512 6.86431 7.00252 7.76988 8.00416 8.44211 9.22234 9.95315 10.14587 11.44215 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.007834 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.512740 B = 3573.430876 C = 5083.312106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.165 4.165 5 C -0.089 4.089 6 C -0.212 4.212 7 C 0.140 3.860 8 O -0.288 6.288 9 C 0.079 3.921 10 H 0.067 0.933 11 C -0.141 4.141 12 C -0.114 4.114 13 C -0.121 4.121 14 C -0.133 4.133 15 C 0.191 3.809 16 H 0.065 0.935 17 N -0.742 5.742 18 C -0.238 4.238 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.279 1.279 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.360 0.640 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 7.207 -12.103 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.184 4.184 5 C -0.108 4.108 6 C -0.231 4.231 7 C 0.094 3.906 8 O -0.200 6.200 9 C 0.022 3.978 10 H 0.085 0.915 11 C -0.179 4.179 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.173 4.173 15 C 0.081 3.919 16 H 0.083 0.917 17 N -0.384 5.384 18 C -0.368 4.368 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.582 5.582 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.193 0.807 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.142 7.031 -12.065 18.505 hybrid contribution 0.967 0.865 0.932 1.598 sum 13.110 7.897 -11.133 18.925 Atomic orbital electron populations 1.20613 0.90375 1.02481 1.02764 1.19350 0.96764 0.90441 1.05376 1.20844 0.94082 0.96689 0.98840 1.20934 0.94203 0.97793 1.05421 1.20860 0.99392 0.92008 0.98494 1.21316 0.93323 0.99347 1.09095 1.18978 0.90351 0.86532 0.94760 1.86250 1.35564 1.11709 1.86477 1.22939 0.94694 0.83892 0.96288 0.91507 1.22093 1.00550 0.97989 0.97289 1.21481 0.98138 0.94765 1.00757 1.21596 0.99240 0.97433 0.97675 1.22223 1.00060 0.99563 0.95471 1.20235 0.94387 0.89352 0.87898 0.91690 1.42666 1.28323 1.51105 1.16293 1.19034 0.98222 1.19406 1.00100 0.89137 1.24611 0.97161 0.99663 0.97445 1.69693 1.22644 1.46746 1.19133 0.86598 0.79757 0.82474 0.79998 1.21009 1.21822 1.20573 0.91127 0.92197 0.90761 0.85809 0.86407 0.86328 0.85422 0.91723 0.90700 0.91897 0.92145 0.91887 0.92284 0.90637 0.92618 0.80696 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.79 36.01 0.35 -1.23 16 2 C -0.12 -1.85 5.89 -104.47 -0.62 -2.47 16 3 C -0.09 -1.14 9.70 -39.61 -0.38 -1.52 16 4 C -0.17 -2.01 10.04 -39.56 -0.40 -2.41 16 5 C -0.09 -1.12 10.04 -39.60 -0.40 -1.52 16 6 C -0.21 -3.05 8.24 -39.43 -0.32 -3.38 16 7 C 0.14 2.33 6.57 -39.22 -0.26 2.07 16 8 O -0.29 -5.24 8.71 -19.45 -0.17 -5.41 16 9 C 0.08 1.29 1.63 -26.73 -0.04 1.25 16 10 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 11 C -0.14 -1.84 5.18 -26.73 -0.14 -1.98 16 12 C -0.11 -1.31 5.92 -26.73 -0.16 -1.46 16 13 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 14 C -0.13 -2.21 5.50 -26.71 -0.15 -2.36 16 15 C 0.19 3.67 2.46 -67.91 -0.17 3.50 16 16 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 17 N -0.74 -17.76 4.79 -53.40 -0.26 -18.01 16 18 C -0.24 -6.72 10.41 -15.06 -0.16 -6.87 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 22 Si 0.88 22.79 27.74 -169.99 -4.71 18.08 16 23 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 25 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.07 1.19 7.53 -51.93 -0.39 0.80 16 29 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.13 1.68 5.43 -52.49 -0.28 1.40 16 33 H 0.06 0.79 6.90 -51.93 -0.36 0.43 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.36 8.74 5.66 -40.82 -0.23 8.51 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -31.57 332.43 -9.12 -40.69 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.67 Total: 8.40 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.09 Total: -20.01 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.52 Total: -46.77 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.17 Total: -5.41 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.57 -9.12 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.757 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds