Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38163 * 120.02882 * 2 1 4 4 C 1.38237 * 120.05540 * 180.02562 * 3 2 1 5 5 C 1.38292 * 120.11523 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.04879 * 359.67821 * 5 4 3 7 7 C 1.38708 * 120.02536 * 180.02562 * 2 1 3 8 8 O 1.35907 * 120.05803 * 359.97438 * 7 2 1 9 9 C 1.42894 * 117.00184 * 185.69453 * 8 7 2 10 10 H 1.09002 * 109.46934 * 35.13843 * 9 8 7 11 11 C 1.53003 * 109.47262 * 275.14218 * 9 8 7 12 12 C 1.53001 * 109.47309 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.46972 * 59.99997 * 12 11 9 14 14 C 1.53006 * 109.47008 * 299.99771 * 13 12 11 15 15 C 1.52992 * 109.47619 * 155.14062 * 9 8 7 16 16 H 1.09002 * 109.47147 * 59.99911 * 15 9 8 17 17 N 1.46506 * 109.47129 * 300.00536 * 15 9 8 18 18 C 1.36936 * 120.00481 * 154.99699 * 17 15 9 19 19 H 1.08000 * 119.99671 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00259 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00074 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99994 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47062 * 89.99833 * 22 20 18 24 24 H 1.48490 * 109.47217 * 210.00314 * 22 20 18 25 25 H 1.48501 * 109.47152 * 330.00415 * 22 20 18 26 26 H 1.09001 * 109.47370 * 269.97375 * 1 2 3 27 27 H 1.09002 * 109.47025 * 29.97356 * 1 2 3 28 28 H 1.09006 * 109.47183 * 149.97578 * 1 2 3 29 29 H 1.08007 * 119.97213 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.94479 * 180.02562 * 4 3 2 31 31 H 1.07998 * 119.97290 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.02689 * 180.32307 * 6 5 4 33 33 H 1.09005 * 109.46885 * 59.99753 * 11 9 8 34 34 H 1.09000 * 109.47129 * 300.00134 * 11 9 8 35 35 H 1.08995 * 109.47188 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.47014 * 299.99702 * 12 11 9 37 37 H 1.09002 * 109.47491 * 59.99998 * 13 12 11 38 38 H 1.09005 * 109.47223 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.46786 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47469 * 299.99966 * 14 13 12 41 41 H 0.97000 * 119.99753 * 334.99143 * 17 15 9 42 42 H 0.96994 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1968 -0.0005 5 6 4.2752 0.0009 -0.0016 6 6 3.5886 -1.1976 0.0046 7 6 2.2011 -1.2009 -0.0005 8 8 1.5233 -2.3789 -0.0005 9 6 2.2978 -3.5731 0.1252 10 1 3.1467 -3.3879 0.7835 11 6 2.8054 -3.9994 -1.2538 12 6 3.6353 -5.2777 -1.1190 13 6 2.7662 -6.3901 -0.5292 14 6 2.2587 -5.9638 0.8499 15 6 1.4284 -4.6853 0.7148 16 1 0.5795 -4.8705 0.0566 17 7 0.9423 -4.2771 2.0352 18 6 -0.2121 -4.8166 2.5369 19 1 -0.7644 -5.5427 1.9589 20 6 -0.6723 -4.4302 3.7881 21 7 -1.7821 -4.9483 4.2700 22 14 0.2835 -3.1748 4.7882 23 1 -0.2016 -1.8096 4.4627 24 1 0.0838 -3.4392 6.2356 25 1 1.7284 -3.2777 4.4610 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6584 2.1316 0.0004 30 1 4.1195 2.1329 -0.0001 31 1 5.3552 0.0041 -0.0024 32 1 4.1313 -2.1313 0.0090 33 1 3.4249 -3.2070 -1.6738 34 1 1.9566 -4.1845 -1.9121 35 1 3.9972 -5.5812 -2.1013 36 1 4.4841 -5.0921 -0.4609 37 1 1.9173 -6.5757 -1.1873 38 1 3.3575 -7.3008 -0.4328 39 1 1.6399 -6.7566 1.2703 40 1 3.1075 -5.7783 1.5081 41 1 1.4383 -3.6248 2.5542 42 1 -2.1035 -4.6786 5.1445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362012456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = -35.107321 kcal Electronic energy + Delta-G solvation = -22051.284055 eV Core-core repulsion = 18995.287919 eV Total energy + Delta-G solvation = -3055.996136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52010 -39.58351 -37.58289 -35.97071 -33.72020 -33.41540 -31.24669 -30.80948 -29.74990 -27.64773 -25.46169 -24.33253 -22.93433 -22.38818 -22.11797 -21.01849 -19.63841 -18.89994 -17.35984 -16.77788 -16.54387 -16.18160 -16.05861 -15.44884 -15.13671 -15.01832 -14.75456 -14.54435 -14.35247 -14.04922 -13.97888 -13.69991 -13.32746 -13.17536 -13.08162 -12.92537 -12.49619 -12.34195 -12.25657 -12.18932 -12.00777 -11.85325 -11.70105 -11.50042 -11.37821 -11.02467 -10.98898 -9.73558 -9.34095 -8.98471 -8.04537 -5.36276 0.40166 0.54254 1.30591 1.34900 1.40338 2.29018 2.44180 2.85199 3.26937 3.39745 3.66492 3.88824 3.92192 4.02438 4.07247 4.15179 4.21525 4.25524 4.34017 4.42418 4.48384 4.53054 4.59155 4.69821 4.75342 4.77178 4.87477 4.94741 4.98816 5.10585 5.17180 5.20902 5.28163 5.32256 5.42444 5.47130 5.51364 5.57951 5.62516 5.74021 5.97389 6.18976 6.60105 7.04438 7.80314 7.98930 9.17283 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.007834 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.512740 B = 3573.430876 C = 5083.312106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.147 4.147 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.088 4.088 6 C -0.219 4.219 7 C 0.108 3.892 8 O -0.318 6.318 9 C 0.085 3.915 10 H 0.072 0.928 11 C -0.132 4.132 12 C -0.107 4.107 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.183 3.817 16 H 0.041 0.959 17 N -0.747 5.747 18 C -0.220 4.220 19 H 0.058 0.942 20 C -0.059 4.059 21 N -0.982 5.982 22 Si 0.947 3.053 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.258 1.258 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.361 0.639 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.300 9.004 -13.264 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.147 4.147 3 C -0.106 4.106 4 C -0.178 4.178 5 C -0.106 4.106 6 C -0.237 4.237 7 C 0.062 3.938 8 O -0.232 6.232 9 C 0.028 3.972 10 H 0.090 0.910 11 C -0.171 4.171 12 C -0.145 4.145 13 C -0.153 4.153 14 C -0.165 4.165 15 C 0.075 3.925 16 H 0.059 0.941 17 N -0.389 5.389 18 C -0.351 4.351 19 H 0.076 0.924 20 C -0.251 4.251 21 N -0.633 5.633 22 Si 0.775 3.225 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.183 1.183 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.193 0.807 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.889 8.825 -13.276 22.508 hybrid contribution -0.198 0.331 1.192 1.253 sum 15.691 9.156 -12.084 21.819 Atomic orbital electron populations 1.20547 0.90997 1.02738 1.01542 1.19605 0.96809 0.91386 1.06931 1.21176 0.94957 0.96610 0.97837 1.21377 0.93873 0.99161 1.03432 1.21287 1.01048 0.91343 0.96935 1.21508 0.92406 1.00757 1.09037 1.19303 0.91571 0.86037 0.96845 1.86194 1.36985 1.12727 1.87295 1.22847 0.93550 0.82605 0.98171 0.91040 1.22047 1.00726 0.99403 0.94880 1.21486 0.97613 0.92874 1.02482 1.21561 0.99802 0.99051 0.94896 1.22057 0.99204 0.97025 0.98239 1.20499 0.94692 0.91993 0.85334 0.94065 1.42674 1.27158 1.50997 1.18025 1.18986 0.98901 1.17743 0.99493 0.92388 1.25345 0.98452 1.02337 0.98918 1.69859 1.24786 1.49006 1.19676 0.85523 0.79438 0.79458 0.78041 1.21164 1.21827 1.18338 0.93072 0.89452 0.92992 0.83475 0.83138 0.83191 0.84457 0.90144 0.91436 0.89029 0.90906 0.92120 0.90053 0.93451 0.92068 0.80688 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.11 9.79 71.24 0.70 -2.41 16 2 C -0.15 -4.47 5.89 -19.77 -0.12 -4.58 16 3 C -0.09 -2.09 9.70 22.25 0.22 -1.87 16 4 C -0.16 -3.26 10.04 22.28 0.22 -3.04 16 5 C -0.09 -1.87 10.04 22.26 0.22 -1.65 16 6 C -0.22 -5.75 8.24 22.37 0.18 -5.57 16 7 C 0.11 3.50 6.57 22.51 0.15 3.65 16 8 O -0.32 -11.77 8.71 -92.50 -0.81 -12.57 16 9 C 0.08 2.74 1.63 30.59 0.05 2.79 16 10 H 0.07 2.21 6.32 -2.39 -0.02 2.19 16 11 C -0.13 -3.21 5.18 30.60 0.16 -3.05 16 12 C -0.11 -2.09 5.92 30.59 0.18 -1.91 16 13 C -0.12 -2.73 5.92 30.59 0.18 -2.55 16 14 C -0.13 -4.15 5.50 30.61 0.17 -3.99 16 15 C 0.18 7.18 2.46 45.00 0.11 7.30 16 16 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 17 N -0.75 -36.59 4.79 -322.87 -1.55 -38.14 16 18 C -0.22 -12.98 10.41 84.03 0.87 -12.11 16 19 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 20 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 21 N -0.98 -64.56 13.97 21.65 0.30 -64.26 16 22 Si 0.95 48.09 27.74 68.60 1.90 49.99 16 23 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 28 H 0.05 1.77 7.53 -2.38 -0.02 1.75 16 29 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.14 3.21 5.43 -2.91 -0.02 3.20 16 33 H 0.08 1.73 6.90 -2.38 -0.02 1.72 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.36 17.51 5.66 -92.71 -0.52 16.99 16 42 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -71.92 332.43 4.03 -67.88 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.41 Total: 29.23 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.77 Total: -32.13 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -1.24 Total: -102.40 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.81 Total: -12.57 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.90 Total: 49.99 kcal Total: -71.92 4.03 -67.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.778 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds