Wall clock time and date at job start Mon Mar 30 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38173 * 120.02557 * 2 1 4 4 C 1.38244 * 120.05136 * 180.02562 * 3 2 1 5 5 C 1.38286 * 120.11739 * 0.02562 * 4 3 2 6 6 C 1.38132 * 120.05104 * 359.68040 * 5 4 3 7 7 C 1.38706 * 120.03074 * 180.02562 * 2 1 3 8 8 O 1.35904 * 120.05381 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99866 * 174.79015 * 8 7 2 10 10 H 1.08998 * 109.47179 * 324.99951 * 9 8 7 11 11 C 1.52995 * 109.47495 * 85.00200 * 9 8 7 12 12 C 1.53001 * 109.46990 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47334 * 300.00069 * 12 11 9 14 14 C 1.52995 * 109.47138 * 60.00022 * 13 12 11 15 15 C 1.53003 * 109.47356 * 300.00227 * 14 13 12 16 16 H 1.09005 * 109.46860 * 299.99744 * 15 14 13 17 17 N 1.46498 * 109.47594 * 180.02562 * 15 14 13 18 18 C 1.36930 * 120.00080 * 84.99638 * 17 15 14 19 19 H 1.07997 * 120.00196 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00016 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99879 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46916 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.46935 * 299.99738 * 22 20 18 25 25 H 1.48494 * 109.47268 * 59.99698 * 22 20 18 26 26 H 1.09006 * 109.46877 * 269.97697 * 1 2 3 27 27 H 1.09000 * 109.47402 * 29.97113 * 1 2 3 28 28 H 1.08995 * 109.47214 * 149.97809 * 1 2 3 29 29 H 1.07992 * 119.97197 * 0.04938 * 3 2 1 30 30 H 1.08005 * 119.94105 * 180.02562 * 4 3 2 31 31 H 1.07994 * 119.97312 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.02367 * 180.31817 * 6 5 4 33 33 H 1.08994 * 109.47181 * 300.00117 * 11 9 8 34 34 H 1.09005 * 109.46927 * 60.00033 * 11 9 8 35 35 H 1.08998 * 109.47248 * 60.00019 * 12 11 9 36 36 H 1.09000 * 109.47068 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.47414 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47268 * 300.00161 * 13 12 11 39 39 H 1.08999 * 109.47216 * 180.02562 * 14 13 12 40 40 H 1.08993 * 109.47289 * 59.99804 * 14 13 12 41 41 H 0.97003 * 119.99847 * 265.00620 * 17 15 14 42 42 H 0.97000 * 119.99753 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.2752 0.0011 -0.0016 6 6 3.5886 -1.1975 0.0045 7 6 2.2011 -1.2009 -0.0005 8 8 1.5233 -2.3788 -0.0005 9 6 2.2988 -3.5735 -0.1167 10 1 3.1533 -3.3901 -0.7681 11 6 2.7944 -3.9966 1.2675 12 6 3.6241 -5.2760 1.1431 13 6 2.7589 -6.3892 0.5489 14 6 2.2634 -5.9661 -0.8354 15 6 1.4336 -4.6867 -0.7110 16 1 0.5791 -4.8697 -0.0595 17 7 0.9586 -4.2818 -2.0364 18 6 -0.1919 -4.8221 -2.5459 19 1 -0.7493 -5.5463 -1.9705 20 6 -0.6417 -4.4388 -3.8020 21 7 0.0374 -3.5558 -4.5030 22 14 -2.2116 -5.1753 -4.4967 23 1 -2.4724 -4.6049 -5.8428 24 1 -2.0620 -6.6489 -4.6034 25 1 -3.3485 -4.8570 -3.5960 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5141 29 1 1.6583 2.1315 0.0008 30 1 4.1194 2.1331 -0.0001 31 1 5.3551 0.0043 -0.0024 32 1 4.1314 -2.1312 0.0089 33 1 3.4103 -3.2033 1.6910 34 1 1.9398 -4.1800 1.9189 35 1 4.4786 -5.0930 0.4916 36 1 3.9775 -5.5772 2.1292 37 1 3.3499 -7.3008 0.4606 38 1 1.9044 -6.5723 1.2004 39 1 1.6466 -6.7590 -1.2586 40 1 3.1178 -5.7831 -1.4869 41 1 1.4592 -3.6312 -2.5532 42 1 -0.2772 -3.2878 -5.3806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362012457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:43 Heat of formation + Delta-G solvation = -20.560684 kcal Electronic energy + Delta-G solvation = -21944.778718 eV Core-core repulsion = 18889.413371 eV Total energy + Delta-G solvation = -3055.365347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19062 -38.25773 -36.22209 -34.00367 -32.51857 -31.18559 -30.01591 -29.42288 -27.73442 -26.41370 -23.76142 -23.07160 -21.59675 -21.13899 -20.87005 -19.44282 -17.68512 -17.06177 -15.96811 -15.42108 -15.04775 -14.81903 -14.31918 -14.15639 -13.81040 -13.66150 -13.16438 -12.94831 -12.86323 -12.76849 -12.53646 -12.16611 -11.93140 -11.80978 -11.23418 -11.13663 -11.03395 -10.91206 -10.82271 -10.76209 -10.50413 -10.31422 -10.21017 -10.10951 -9.73030 -9.49006 -8.86587 -8.56890 -7.72729 -6.92000 -5.71312 -3.00105 1.56367 1.73957 3.46503 3.50968 3.51884 3.63054 4.02237 4.60082 4.95588 4.97413 5.05145 5.07517 5.17425 5.25298 5.42234 5.49194 5.51611 5.59142 5.64636 5.68959 5.82098 5.84556 5.86211 5.94265 5.95985 6.03504 6.06321 6.14546 6.23568 6.33200 6.42569 6.52598 6.53318 6.57186 6.63772 6.71934 6.81767 6.84126 6.98239 7.13538 7.72904 7.92370 8.45647 9.57174 10.13125 10.48470 11.51029 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.006687 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.337902 B = 4186.437453 C = 5689.861521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.167 4.167 5 C -0.089 4.089 6 C -0.212 4.212 7 C 0.146 3.854 8 O -0.286 6.286 9 C 0.083 3.917 10 H 0.068 0.932 11 C -0.142 4.142 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.133 4.133 15 C 0.186 3.814 16 H 0.055 0.945 17 N -0.717 5.717 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.286 1.286 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.290 4.039 12.373 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.185 4.185 5 C -0.107 4.107 6 C -0.230 4.230 7 C 0.099 3.901 8 O -0.198 6.198 9 C 0.025 3.975 10 H 0.086 0.914 11 C -0.180 4.180 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.173 4.173 15 C 0.075 3.925 16 H 0.073 0.927 17 N -0.357 5.357 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.214 1.214 25 H -0.213 1.213 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.888 3.917 12.319 15.144 hybrid contribution -0.342 -0.206 -0.707 0.812 sum 7.546 3.711 11.612 14.337 Atomic orbital electron populations 1.20613 0.90540 1.03434 1.01688 1.19308 0.96680 0.90434 1.05419 1.20825 0.94063 0.96650 0.98921 1.20906 0.94201 0.97721 1.05708 1.20841 0.99310 0.92041 0.98553 1.21298 0.93361 0.99255 1.09131 1.18945 0.90290 0.86523 0.94295 1.86241 1.35518 1.11692 1.86388 1.22884 0.94797 0.83922 0.95861 0.91407 1.22100 1.00455 0.97905 0.97516 1.21471 0.98202 0.94793 1.00613 1.21598 0.99158 0.97378 0.97797 1.22247 1.00232 0.99675 0.95170 1.20246 0.94108 0.89369 0.88739 0.92656 1.42283 1.28064 1.50914 1.14457 1.19150 0.99923 1.18726 0.98933 0.91289 1.24715 0.99029 0.99627 0.97400 1.69660 1.40152 1.35202 1.12916 0.86305 0.83506 0.78449 0.78142 1.21762 1.21351 1.21309 0.91985 0.92153 0.90068 0.85950 0.86531 0.86436 0.85519 0.91807 0.90944 0.92101 0.92052 0.92475 0.92130 0.91158 0.92510 0.78278 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.79 36.00 0.35 -1.33 16 2 C -0.12 -1.95 5.89 -104.48 -0.62 -2.57 16 3 C -0.09 -1.22 9.70 -39.60 -0.38 -1.61 16 4 C -0.17 -2.19 10.04 -39.56 -0.40 -2.59 16 5 C -0.09 -1.21 10.04 -39.60 -0.40 -1.61 16 6 C -0.21 -3.28 8.25 -39.43 -0.33 -3.60 16 7 C 0.15 2.58 6.57 -39.22 -0.26 2.32 16 8 O -0.29 -5.52 8.71 -19.44 -0.17 -5.69 16 9 C 0.08 1.43 1.63 -26.73 -0.04 1.39 16 10 H 0.07 1.19 6.31 -51.93 -0.33 0.87 16 11 C -0.14 -1.96 5.18 -26.73 -0.14 -2.10 16 12 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 13 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16 14 C -0.13 -2.30 5.50 -26.73 -0.15 -2.45 16 15 C 0.19 3.72 2.46 -67.93 -0.17 3.55 16 16 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 17 N -0.72 -18.13 4.99 -53.42 -0.27 -18.39 16 18 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 22 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.08 1.54 7.53 -51.93 -0.39 1.15 16 29 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.13 1.81 5.43 -52.49 -0.29 1.53 16 33 H 0.06 0.83 6.91 -51.93 -0.36 0.47 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.38 10.51 7.80 -40.82 -0.32 10.20 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -30.63 335.56 -9.48 -40.11 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.72 Total: 10.12 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -3.08 Total: -21.07 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.46 Total: -46.10 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.17 Total: -5.69 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.63 -9.48 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362012457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.550 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds