Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.90630 * 2 1 4 4 C 1.53780 * 113.61197 * 228.74886 * 2 1 3 5 5 C 1.53784 * 87.08031 * 270.88342 * 4 2 1 6 6 C 1.53782 * 113.60893 * 131.25011 * 2 1 3 7 7 H 1.09008 * 113.68510 * 203.67318 * 6 2 1 8 8 N 1.46891 * 113.61937 * 334.56860 * 6 2 1 9 9 C 1.46899 * 111.00051 * 202.00582 * 8 6 2 10 10 C 1.50704 * 109.47041 * 179.97438 * 9 8 6 11 11 C 1.38322 * 119.96568 * 269.97297 * 10 9 8 12 12 C 1.38283 * 120.13769 * 180.02562 * 11 10 9 13 13 C 1.38119 * 120.07036 * 359.74589 * 12 11 10 14 14 C 1.38860 * 119.92732 * 0.51042 * 13 12 11 15 15 O 1.35748 * 120.06801 * 179.76826 * 14 13 12 16 16 C 1.34829 * 116.99823 * 5.23765 * 15 14 13 17 17 H 1.07999 * 120.00278 * 354.91487 * 16 15 14 18 18 C 1.38664 * 120.00141 * 174.92143 * 16 15 14 19 19 N 1.31558 * 119.99507 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00203 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47253 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.47381 * 59.99906 * 20 18 16 23 23 H 1.48504 * 109.47386 * 300.00242 * 20 18 16 24 24 C 1.38082 * 119.96519 * 90.00011 * 10 9 8 25 25 H 1.08999 * 109.47254 * 288.75129 * 1 2 3 26 26 H 1.09004 * 109.46924 * 48.74641 * 1 2 3 27 27 H 1.08992 * 109.47257 * 168.74880 * 1 2 3 28 28 H 1.09007 * 109.46911 * 191.24754 * 3 2 1 29 29 H 1.08995 * 109.47266 * 311.24591 * 3 2 1 30 30 H 1.08995 * 109.47100 * 71.25306 * 3 2 1 31 31 H 1.09001 * 113.61229 * 156.33877 * 4 2 1 32 32 H 1.08998 * 113.61944 * 25.43314 * 4 2 1 33 33 H 1.08994 * 113.61974 * 220.02086 * 5 4 2 34 34 H 1.09005 * 113.68721 * 89.12883 * 5 4 2 35 35 H 1.00904 * 111.00042 * 325.95431 * 8 6 2 36 36 H 1.08998 * 109.47435 * 59.99859 * 9 8 6 37 37 H 1.08994 * 109.47109 * 299.99304 * 9 8 6 38 38 H 1.08005 * 119.93061 * 0.02562 * 11 10 9 39 39 H 1.08002 * 119.96353 * 180.02562 * 12 11 10 40 40 H 1.07992 * 120.03506 * 180.27955 * 13 12 11 41 41 H 0.96995 * 120.00156 * 359.97438 * 19 18 16 42 42 H 1.07999 * 120.03549 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 2.0929 -2.0426 0.0000 6 6 2.1459 -0.9291 1.0594 7 1 3.1590 -0.6509 1.3501 8 7 1.2679 -1.1711 2.2119 9 6 2.0436 -1.5975 3.3843 10 6 1.1112 -1.8351 4.5442 11 6 0.8082 -0.8000 5.4103 12 6 -0.0465 -1.0142 6.4760 13 6 -0.6046 -2.2618 6.6758 14 6 -0.2981 -3.3043 5.8111 15 8 -0.8412 -4.5328 6.0075 16 6 -1.7535 -4.6482 6.9936 17 1 -1.9612 -3.8070 7.6382 18 6 -2.4248 -5.8470 7.1802 19 7 -2.1720 -6.8716 6.3947 20 14 -3.6881 -6.0072 8.5468 21 1 -4.2594 -7.3778 8.5347 22 1 -4.7744 -5.0168 8.3354 23 1 -3.0355 -5.7539 9.8565 24 6 0.5607 -3.0860 4.7415 25 1 -0.3634 0.3303 0.9731 26 1 -0.3633 0.6777 -0.7726 27 1 -0.3633 -1.0078 -0.2005 28 1 3.1955 1.3517 -0.2005 29 1 1.6429 2.0077 -0.7726 30 1 1.9627 1.8725 0.9731 31 1 3.1591 -0.6499 -1.3489 32 1 1.4945 -1.1087 -1.9146 33 1 2.9716 -2.6875 0.0001 34 1 1.1573 -2.6019 0.0010 35 1 0.7141 -0.3543 2.4224 36 1 2.7603 -0.8199 3.6482 37 1 2.5767 -2.5192 3.1516 38 1 1.2400 0.1775 5.2539 39 1 -0.2815 -0.2040 7.1503 40 1 -1.2755 -2.4273 7.5056 41 1 -1.5163 -6.7883 5.6848 42 1 0.7977 -3.8937 4.0649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380594313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = -16.031874 kcal Electronic energy + Delta-G solvation = -20785.494720 eV Core-core repulsion = 17730.325757 eV Total energy + Delta-G solvation = -3055.168963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04454 -40.67960 -38.60624 -35.54083 -34.27874 -31.91873 -31.41403 -30.59156 -28.32863 -27.27979 -26.36642 -24.25390 -23.34561 -23.11581 -22.35035 -19.98593 -19.12101 -18.54431 -17.23810 -16.83551 -16.67434 -16.34111 -15.83003 -15.60989 -15.54894 -15.17762 -14.84094 -14.43798 -14.29831 -14.10434 -13.94321 -13.16819 -13.07892 -13.06421 -12.84094 -12.73094 -12.51509 -12.38804 -12.31606 -12.09326 -12.03795 -11.93422 -11.56867 -11.31298 -10.98935 -10.90718 -10.76346 -9.74894 -9.33323 -9.06667 -8.94338 -6.25016 0.46076 0.67004 1.48030 1.60941 1.78564 2.35814 2.77510 3.06280 3.30195 3.42118 3.52203 3.66715 3.90556 3.97583 4.05216 4.08701 4.25986 4.34021 4.37098 4.52400 4.54073 4.64048 4.68478 4.71332 4.78548 4.83357 4.94986 5.01325 5.02241 5.08696 5.16553 5.21285 5.21991 5.22347 5.32525 5.55711 5.57866 5.63400 5.70119 5.71792 6.04206 6.18498 6.29730 6.47031 6.86771 7.63521 8.50211 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.003468 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.671287 B = 8072.947325 C = 8531.185005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.125 4.125 5 C -0.136 4.136 6 C 0.064 3.936 7 H 0.079 0.921 8 N -0.680 5.680 9 C 0.112 3.888 10 C -0.036 4.036 11 C -0.180 4.180 12 C -0.071 4.071 13 C -0.243 4.243 14 C 0.113 3.887 15 O -0.255 6.255 16 C -0.489 4.489 17 H 0.091 0.909 18 C -0.046 4.046 19 N -0.918 5.918 20 Si 1.146 2.854 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.259 1.259 24 C -0.183 4.183 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.345 0.655 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.259 0.741 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 18.081 -10.621 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.084 4.084 3 C -0.192 4.192 4 C -0.163 4.163 5 C -0.174 4.174 6 C -0.045 4.045 7 H 0.096 0.904 8 N -0.313 5.313 9 C -0.017 4.017 10 C -0.037 4.037 11 C -0.199 4.199 12 C -0.088 4.088 13 C -0.263 4.263 14 C 0.064 3.936 15 O -0.163 6.163 16 C -0.564 4.564 17 H 0.109 0.891 18 C -0.241 4.241 19 N -0.553 5.553 20 Si 0.961 3.039 21 H -0.198 1.198 22 H -0.185 1.185 23 H -0.183 1.183 24 C -0.203 4.203 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.166 0.834 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.134 0.866 41 H 0.067 0.933 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.661 16.175 -10.225 20.613 hybrid contribution 1.393 1.184 -0.399 1.871 sum 9.054 17.359 -10.624 22.276 Atomic orbital electron populations 1.21458 0.93123 1.01598 1.01730 1.22041 0.95852 0.94776 0.95774 1.21750 1.00799 0.94622 1.02006 1.22923 1.01514 0.95530 0.96284 1.23000 1.01536 0.96732 0.96127 1.23244 0.95338 0.96870 0.89076 0.90360 1.60612 1.25194 1.40793 1.04670 1.20795 0.92844 1.00796 0.87245 1.19611 0.96472 0.91502 0.96100 1.21017 1.02721 0.99353 0.96805 1.21154 0.94935 0.95259 0.97501 1.21318 1.07335 0.94732 1.02874 1.19801 0.93749 0.85238 0.94799 1.83646 1.52892 1.27268 1.52504 1.22599 1.19794 1.03132 1.10912 0.89125 1.28432 1.01557 0.89754 1.04405 1.70708 1.33553 1.32456 1.18571 0.82588 0.72671 0.77461 0.71183 1.19801 1.18458 1.18342 1.20204 1.03120 0.98896 0.98112 0.92684 0.91590 0.93446 0.91845 0.91743 0.92735 0.88903 0.91035 0.91918 0.91295 0.83443 0.92125 0.91193 0.83338 0.83470 0.86606 0.93285 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.46 71.98 0.61 -1.62 16 2 C -0.08 -1.37 1.28 -51.65 -0.07 -1.44 16 3 C -0.13 -1.73 9.20 71.98 0.66 -1.07 16 4 C -0.12 -1.96 7.20 31.12 0.22 -1.74 16 5 C -0.14 -2.78 7.53 31.12 0.23 -2.55 16 6 C 0.06 1.26 3.56 45.44 0.16 1.42 16 7 H 0.08 1.40 7.85 -2.38 -0.02 1.38 16 8 N -0.68 -16.60 6.00 -492.86 -2.95 -19.55 16 9 C 0.11 2.92 5.67 85.56 0.49 3.40 16 10 C -0.04 -1.23 5.39 -19.88 -0.11 -1.34 16 11 C -0.18 -5.47 9.70 22.30 0.22 -5.26 16 12 C -0.07 -2.41 10.04 22.25 0.22 -2.19 16 13 C -0.24 -10.90 9.17 22.39 0.21 -10.69 16 14 C 0.11 5.84 6.65 22.58 0.15 5.99 16 15 O -0.26 -15.73 9.16 -22.71 -0.21 -15.94 16 16 C -0.49 -29.44 9.49 67.92 0.64 -28.79 16 17 H 0.09 5.07 5.20 -2.91 -0.02 5.06 16 18 C -0.05 -2.69 5.49 84.84 0.47 -2.23 16 19 N -0.92 -58.97 13.70 21.62 0.30 -58.67 16 20 Si 1.15 49.09 29.92 68.60 2.05 51.15 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 C -0.18 -8.12 9.65 22.39 0.22 -7.90 16 25 H 0.05 1.06 6.79 -2.39 -0.02 1.04 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.02 7.34 -2.39 -0.02 1.00 16 28 H 0.06 0.72 7.94 -2.38 -0.02 0.70 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.19 7.96 -2.39 -0.02 1.17 16 32 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.71 7.66 -2.38 -0.02 1.69 16 35 H 0.35 7.99 7.08 -89.69 -0.64 7.35 16 36 H 0.06 1.28 8.07 -2.39 -0.02 1.26 16 37 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 41 H 0.26 17.40 7.97 -92.71 -0.74 16.66 16 42 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -71.46 340.99 3.91 -67.55 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.40 Total: 31.46 kcal Atomic # 6 Polarization: -60.32 SS G_CDS: 4.32 Total: -55.99 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.66 Total: -78.22 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.21 Total: -15.94 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.05 Total: 51.15 kcal Total: -71.46 3.91 -67.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380594313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.517 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds