Wall clock time and date at job start Mon Mar 30 2020 02:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47545 * 2 1 4 4 C 1.53003 * 109.47191 * 239.99743 * 2 1 3 5 5 O 1.42902 * 112.93533 * 48.43462 * 4 2 1 6 6 C 1.53933 * 113.73785 * 276.73265 * 4 2 1 7 7 N 1.47957 * 86.18182 * 221.92168 * 6 4 2 8 8 C 1.46901 * 111.00397 * 137.58159 * 7 6 4 9 9 C 1.50706 * 109.46825 * 70.63725 * 8 7 6 10 10 C 1.38634 * 119.74770 * 269.72587 * 9 8 7 11 11 C 1.37622 * 120.24777 * 179.72625 * 10 9 8 12 12 C 1.40712 * 119.74038 * 0.52692 * 11 10 9 13 13 C 1.41398 * 120.24169 * 179.72572 * 12 11 10 14 14 H 1.07996 * 120.00025 * 24.41415 * 13 12 11 15 15 C 1.39942 * 120.00011 * 204.40778 * 13 12 11 16 16 N 1.30828 * 119.99984 * 17.85999 * 15 13 12 17 17 Si 1.86805 * 120.00099 * 197.85680 * 15 13 12 18 18 H 1.48501 * 109.47122 * 60.00371 * 17 15 13 19 19 H 1.48497 * 109.47104 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47053 * 300.00100 * 17 15 13 21 21 C 1.40717 * 119.51472 * 359.74812 * 12 11 10 22 22 C 1.37614 * 119.74489 * 0.02562 * 21 12 11 23 23 C 1.47956 * 90.76552 * 24.68494 * 7 6 4 24 24 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47098 * 300.00472 * 1 2 3 26 26 H 1.09000 * 109.47305 * 59.99832 * 1 2 3 27 27 H 1.09000 * 109.47305 * 120.00168 * 2 1 3 28 28 H 1.09000 * 109.46699 * 299.99895 * 3 2 1 29 29 H 1.09002 * 109.46969 * 60.00049 * 3 2 1 30 30 H 1.08998 * 109.46721 * 179.97438 * 3 2 1 31 31 H 0.96699 * 113.99865 * 179.97438 * 5 4 2 32 32 H 1.09011 * 113.75466 * 336.23537 * 6 4 2 33 33 H 1.08993 * 113.76208 * 107.59724 * 6 4 2 34 34 H 1.08997 * 109.47305 * 190.64039 * 8 7 6 35 35 H 1.09000 * 109.47056 * 310.64263 * 8 7 6 36 36 H 1.08006 * 119.87428 * 359.97438 * 10 9 8 37 37 H 1.07998 * 120.12658 * 180.28267 * 11 10 9 38 38 H 0.97002 * 119.99958 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.12595 * 179.97438 * 21 12 11 40 40 H 1.08000 * 119.87593 * 179.97438 * 22 21 12 41 41 H 1.09001 * 113.76217 * 220.99631 * 23 7 6 42 42 H 1.09001 * 113.85694 * 89.64468 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4024 -0.2767 -2.4483 6 6 2.0908 -2.2529 -1.1031 7 7 3.3951 -2.1768 -1.7975 8 6 4.3807 -3.0639 -1.1652 9 6 4.0190 -4.4992 -1.4483 10 6 3.1904 -5.1852 -0.5737 11 6 2.8490 -6.4944 -0.8251 12 6 3.3534 -7.1400 -1.9691 13 6 3.0141 -8.4868 -2.2347 14 1 2.1041 -8.9043 -1.8298 15 6 3.8575 -9.2786 -3.0222 16 7 5.0981 -8.9145 -3.2220 17 14 3.2119 -10.8554 -3.7879 18 1 2.0737 -10.5388 -4.6877 19 1 4.2946 -11.5059 -4.5687 20 1 2.7542 -11.7752 -2.7156 21 6 4.1982 -6.4356 -2.8468 22 6 4.5225 -5.1256 -2.5779 23 6 3.5751 -0.7786 -1.3484 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4423 0.0005 31 1 1.7137 -0.7225 -3.2479 32 1 2.1625 -2.5933 -0.0700 33 1 1.3204 -2.7740 -1.6713 34 1 5.3711 -2.8524 -1.5682 35 1 4.3830 -2.8954 -0.0883 36 1 2.8082 -4.6889 0.3062 37 1 2.1997 -7.0255 -0.1448 38 1 5.6828 -9.4636 -3.7676 39 1 4.5912 -6.9216 -3.7275 40 1 5.1711 -4.5831 -3.2499 41 1 3.9906 -0.1218 -2.1126 42 1 4.0809 -0.6859 -0.3873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399069597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:20 Heat of formation + Delta-G solvation = -10.792164 kcal Electronic energy + Delta-G solvation = -21158.390132 eV Core-core repulsion = 18103.448380 eV Total energy + Delta-G solvation = -3054.941752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55073 -37.59927 -35.58773 -34.27531 -33.70725 -30.90991 -29.29586 -28.08822 -27.54715 -25.74204 -25.21747 -23.23666 -21.02473 -20.89477 -19.76002 -19.61115 -17.31083 -16.65043 -15.68136 -15.29553 -15.09478 -14.73264 -14.39829 -14.08225 -13.72471 -13.57002 -13.28458 -13.05272 -12.73147 -12.56308 -12.24417 -12.12750 -11.91422 -11.75363 -11.47034 -11.29273 -11.13420 -11.04350 -10.98114 -10.93346 -10.50918 -10.42425 -10.05345 -9.66625 -9.56818 -9.37714 -9.13530 -8.52240 -7.45102 -7.31651 -6.77029 -4.35817 2.74512 3.05373 3.07197 3.08144 3.18518 3.92150 4.14362 4.17526 4.39077 4.57548 4.66362 5.03921 5.22288 5.22871 5.39907 5.50005 5.60317 5.62761 5.70432 5.71935 5.77491 5.82142 5.82870 5.89799 6.01106 6.16309 6.19861 6.21794 6.30791 6.36710 6.42981 6.65916 6.94605 7.06663 7.24419 7.30462 7.37985 7.60707 7.71956 7.85258 8.04716 8.13017 8.29344 8.63798 8.88845 8.97215 10.17466 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036914 B = 0.003533 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.335950 B = 7922.977037 C = 8149.623503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C -0.144 4.144 4 C 0.117 3.883 5 O -0.538 6.538 6 C -0.013 4.013 7 N -0.473 5.473 8 C 0.089 3.911 9 C -0.211 4.211 10 C -0.083 4.083 11 C -0.228 4.228 12 C 0.113 3.887 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.793 5.793 17 Si 0.908 3.092 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.167 4.167 22 C -0.081 4.081 23 C -0.033 4.033 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.386 0.614 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.281 0.719 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 13.833 3.633 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 C -0.201 4.201 4 C 0.075 3.925 5 O -0.344 6.344 6 C -0.142 4.142 7 N -0.196 5.196 8 C -0.038 4.038 9 C -0.212 4.212 10 C -0.102 4.102 11 C -0.247 4.247 12 C 0.111 3.889 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.418 5.418 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.186 4.186 22 C -0.100 4.100 23 C -0.162 4.162 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.589 13.961 3.242 14.775 hybrid contribution 0.334 -1.204 0.180 1.262 sum -3.255 12.757 3.422 13.603 Atomic orbital electron populations 1.21692 0.94389 1.02019 1.01713 1.21067 0.96940 0.96408 0.95009 1.21787 1.00815 0.95625 1.01898 1.22659 0.90719 0.92838 0.86332 1.86336 1.65683 1.66149 1.16271 1.24622 0.94478 0.95919 0.99212 1.68640 1.02902 1.01152 1.46863 1.21205 0.95272 0.91997 0.95321 1.18793 1.08494 0.93596 1.00363 1.20326 0.97935 0.94683 0.97211 1.20921 1.08778 0.95488 0.99548 1.17612 0.89479 0.92658 0.89183 1.19571 1.06700 0.95608 1.27478 0.90533 1.25910 0.93986 0.99760 0.94476 1.69823 1.04607 1.37601 1.29766 0.86380 0.79552 0.81010 0.79852 1.18793 1.20331 1.19025 1.21307 1.03511 0.92893 1.00906 1.20486 0.98866 0.94899 0.95714 1.24756 0.97372 0.93567 1.00530 0.92647 0.93136 0.91762 0.90340 0.92037 0.92850 0.92786 0.76541 0.90835 0.89148 0.91502 0.95179 0.90095 0.89181 0.90819 0.86511 0.89561 0.89433 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.95 37.15 0.33 -1.14 16 2 C -0.08 -0.80 2.58 -90.62 -0.23 -1.04 16 3 C -0.14 -1.36 8.98 37.16 0.33 -1.03 16 4 C 0.12 1.44 0.99 -89.69 -0.09 1.35 16 5 O -0.54 -6.84 12.61 -35.23 -0.44 -7.28 16 6 C -0.01 -0.19 6.29 -2.77 -0.02 -0.21 16 7 N -0.47 -7.42 6.14 -239.65 -1.47 -8.89 16 8 C 0.09 1.56 4.97 -4.97 -0.02 1.54 16 9 C -0.21 -4.55 5.14 -104.33 -0.54 -5.09 16 10 C -0.08 -1.83 8.94 -39.66 -0.35 -2.19 16 11 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 12 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 13 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 14 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 15 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 16 N -0.79 -20.58 10.95 55.55 0.61 -19.97 16 17 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 18 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.17 -4.37 8.70 -38.87 -0.34 -4.70 16 22 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 23 C -0.03 -0.42 6.38 -2.77 -0.02 -0.43 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.72 7.61 -51.93 -0.40 0.32 16 27 H 0.08 0.81 7.94 -51.93 -0.41 0.39 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.49 7.43 -51.93 -0.39 0.10 16 31 H 0.39 4.40 8.89 45.56 0.41 4.80 16 32 H 0.07 1.08 6.91 -51.92 -0.36 0.72 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.03 0.50 7.63 -51.93 -0.40 0.10 16 36 H 0.08 1.59 7.44 -52.48 -0.39 1.19 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.84 7.72 -51.93 -0.40 0.44 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -27.48 338.74 -9.98 -37.46 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.01 Total: 9.56 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -2.74 Total: -29.66 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: -0.86 Total: -28.86 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.44 Total: -7.28 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.48 -9.98 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399069597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.666 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds