Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 N 1.46894 * 110.45674 * 57.93957 * 3 2 1 5 5 C 1.46903 * 111.00386 * 53.64914 * 4 3 2 6 6 C 1.50696 * 109.47483 * 174.19709 * 5 4 3 7 7 C 1.38631 * 119.75144 * 269.72606 * 6 5 4 8 8 C 1.37620 * 120.24899 * 179.76241 * 7 6 5 9 9 C 1.40715 * 119.74505 * 0.49003 * 8 7 6 10 10 C 1.41391 * 120.24673 * 179.78688 * 9 8 7 11 11 H 1.08001 * 119.99692 * 28.21051 * 10 9 8 12 12 C 1.39944 * 120.00306 * 208.21308 * 10 9 8 13 13 N 1.30818 * 119.99789 * 12.91362 * 12 10 9 14 14 Si 1.86802 * 119.99881 * 192.92373 * 12 10 9 15 15 H 1.48497 * 109.47557 * 59.99493 * 14 12 10 16 16 H 1.48506 * 109.46843 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46892 * 299.99356 * 14 12 10 18 18 C 1.40720 * 119.51123 * 359.76577 * 9 8 7 19 19 C 1.37624 * 119.74173 * 359.97438 * 18 9 8 20 20 C 1.54509 * 110.51244 * 295.33567 * 3 2 1 21 21 C 1.54474 * 104.06153 * 241.35405 * 20 3 2 22 22 O 1.44422 * 104.80589 * 336.02025 * 21 20 3 23 23 C 1.44429 * 105.27615 * 40.51365 * 22 21 20 24 24 H 1.09000 * 109.47080 * 63.50783 * 1 2 3 25 25 H 1.09000 * 109.47157 * 183.51289 * 1 2 3 26 26 H 1.09005 * 109.47055 * 303.51054 * 1 2 3 27 27 H 1.09000 * 109.47125 * 240.00237 * 2 1 3 28 28 H 1.08999 * 109.47711 * 119.99780 * 2 1 3 29 29 H 1.00902 * 110.99974 * 289.69529 * 4 3 2 30 30 H 1.08999 * 109.46740 * 294.20020 * 5 4 3 31 31 H 1.08997 * 109.46616 * 54.19722 * 5 4 3 32 32 H 1.08003 * 119.87315 * 359.97438 * 7 6 5 33 33 H 1.07998 * 120.12949 * 180.27841 * 8 7 6 34 34 H 0.97005 * 119.99658 * 180.02562 * 13 12 10 35 35 H 1.07993 * 120.12909 * 180.02562 * 18 9 8 36 36 H 1.07998 * 119.87257 * 179.97438 * 19 18 9 37 37 H 1.08994 * 110.51318 * 122.70583 * 20 3 2 38 38 H 1.09004 * 110.62517 * 0.05429 * 20 3 2 39 39 H 1.09001 * 110.37242 * 94.85299 * 21 20 3 40 40 H 1.09005 * 110.37542 * 217.18414 * 21 20 3 41 41 H 1.08995 * 110.37310 * 200.65850 * 23 22 21 42 42 H 1.08994 * 110.37084 * 78.31977 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5223 2.1701 1.1664 5 6 1.8233 1.4511 2.4116 6 6 1.4059 2.2917 3.5906 7 6 2.3096 3.1756 4.1596 8 6 1.9378 3.9518 5.2335 9 6 0.6379 3.8380 5.7603 10 6 0.2461 4.6270 6.8662 11 1 0.7054 5.5904 7.0320 12 6 -0.7367 4.1597 7.7461 13 7 -1.1116 2.9072 7.7024 14 14 -1.5135 5.3246 8.9826 15 1 -2.1780 6.4402 8.2622 16 1 -2.5191 4.5895 9.7912 17 1 -0.4613 5.8702 9.8773 18 6 -0.2693 2.9336 5.1780 19 6 0.1227 2.1714 4.1013 20 6 1.6366 2.1594 -1.3079 21 6 2.9850 2.5358 -1.9609 22 8 3.9235 2.5902 -0.8645 23 6 3.5844 1.4706 -0.0174 24 1 -0.3633 0.4584 -0.9198 25 1 -0.3633 -1.0257 0.0630 26 1 -0.3633 0.5674 0.8569 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5316 2.3389 1.0768 30 1 1.2781 0.5074 2.4270 31 1 2.8937 1.2533 2.4672 32 1 3.3082 3.2579 3.7564 33 1 2.6420 4.6430 5.6724 34 1 -1.7931 2.5833 8.3120 35 1 -1.2695 2.8385 5.5740 36 1 -0.5718 1.4762 3.6530 37 1 1.0551 3.0549 -1.0890 38 1 1.0728 1.4880 -1.9557 39 1 3.2847 1.7729 -2.6794 40 1 2.9128 3.5087 -2.4472 41 1 3.9725 1.6252 0.9893 42 1 3.9761 0.5444 -0.4379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399136872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -35.119902 kcal Electronic energy + Delta-G solvation = -21262.232719 eV Core-core repulsion = 18206.236038 eV Total energy + Delta-G solvation = -3055.996682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.02729 -37.67069 -36.12787 -33.84217 -32.15186 -30.37703 -29.77729 -29.19785 -28.17224 -26.08656 -23.69940 -23.30184 -22.20262 -20.95605 -19.81281 -19.15231 -17.24713 -16.71438 -15.97687 -15.39344 -15.32075 -15.02997 -14.58925 -14.22997 -13.88756 -13.50668 -13.41350 -13.05601 -12.69332 -12.49267 -12.20073 -11.92647 -11.82514 -11.60970 -11.48210 -11.23442 -11.08548 -10.98612 -10.96318 -10.87718 -10.62275 -10.43825 -10.29999 -9.70173 -9.53881 -9.34252 -9.14313 -8.03503 -7.41662 -7.22207 -6.69421 -4.33184 2.77774 3.07980 3.10982 3.11845 3.20614 3.96432 4.00012 4.37386 4.44041 4.72419 4.83446 4.88681 5.04099 5.06387 5.25854 5.44589 5.50466 5.55178 5.66648 5.69317 5.76938 5.78094 5.83490 5.84855 5.94111 6.00749 6.09670 6.16031 6.32867 6.40992 6.45454 6.80536 6.97296 7.12221 7.29719 7.40618 7.43034 7.65082 7.71929 7.91427 8.09174 8.16100 8.34564 8.67663 8.93719 9.00982 10.25438 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.003684 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.836021 B = 7598.719319 C = 8006.023665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C 0.082 3.918 4 N -0.662 5.662 5 C 0.119 3.881 6 C -0.206 4.206 7 C -0.071 4.071 8 C -0.224 4.224 9 C 0.113 3.887 10 C -0.466 4.466 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.802 5.802 14 Si 0.909 3.091 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.160 4.160 19 C -0.098 4.098 20 C -0.146 4.146 21 C 0.048 3.952 22 O -0.368 6.368 23 C 0.058 3.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.341 0.659 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.279 0.721 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -5.365 -14.282 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C -0.010 4.010 4 N -0.294 5.294 5 C -0.008 4.008 6 C -0.207 4.207 7 C -0.090 4.090 8 C -0.244 4.244 9 C 0.110 3.890 10 C -0.496 4.496 11 H 0.094 0.906 12 C -0.142 4.142 13 N -0.428 5.428 14 Si 0.734 3.266 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.179 4.179 19 C -0.117 4.117 20 C -0.184 4.184 21 C -0.029 4.029 22 O -0.286 6.286 23 C -0.019 4.019 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.822 -4.961 -14.070 15.184 hybrid contribution -1.250 -0.516 0.603 1.481 sum 1.571 -5.477 -13.467 14.623 Atomic orbital electron populations 1.21808 0.95419 1.01864 1.02123 1.22189 0.96772 0.97471 1.02367 1.22328 0.95299 0.91587 0.91758 1.60847 1.20904 1.47539 1.00124 1.20642 0.99248 0.93536 0.87407 1.18882 0.95872 1.05422 1.00566 1.20342 0.97042 0.95881 0.95729 1.21025 0.96486 1.05144 1.01698 1.17621 0.89955 0.90626 0.90787 1.19555 1.18184 1.04111 1.07743 0.90622 1.25871 0.95272 0.95069 0.97943 1.69798 1.25097 1.14218 1.33704 0.86361 0.79295 0.80915 0.80065 1.18916 1.20416 1.19071 1.21277 1.00056 1.00330 0.96249 1.20512 0.94615 0.99198 0.97336 1.23071 0.98394 1.01376 0.95597 1.23320 0.88041 1.01510 0.90060 1.89149 1.54599 1.48782 1.36066 1.23498 0.93196 0.89094 0.96110 0.92590 0.92655 0.92233 0.91824 0.91226 0.83884 0.95693 0.92050 0.89488 0.89095 0.91006 0.86597 0.90011 0.89747 0.90619 0.92885 0.89370 0.88437 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.25 37.16 0.34 -1.26 16 2 C -0.15 -1.59 4.19 -26.73 -0.11 -1.70 16 3 C 0.08 1.01 0.63 -130.03 -0.08 0.93 16 4 N -0.66 -10.12 5.79 -99.63 -0.58 -10.70 16 5 C 0.12 2.02 4.73 -4.98 -0.02 1.99 16 6 C -0.21 -4.40 5.46 -104.33 -0.57 -4.97 16 7 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 8 C -0.22 -5.60 9.80 -38.87 -0.38 -5.98 16 9 C 0.11 3.03 5.55 -106.82 -0.59 2.44 16 10 C -0.47 -12.54 9.06 -37.74 -0.34 -12.88 16 11 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 12 C 0.07 1.91 5.21 -17.34 -0.09 1.81 16 13 N -0.80 -20.95 10.92 55.55 0.61 -20.35 16 14 Si 0.91 18.93 29.58 -169.99 -5.03 13.90 16 15 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 C -0.16 -4.14 8.66 -38.87 -0.34 -4.48 16 19 C -0.10 -2.23 9.67 -39.66 -0.38 -2.62 16 20 C -0.15 -1.57 5.97 -25.17 -0.15 -1.72 16 21 C 0.05 0.52 7.63 37.93 0.29 0.81 16 22 O -0.37 -5.31 11.65 -35.23 -0.41 -5.72 16 23 C 0.06 0.75 6.69 37.94 0.25 1.01 16 24 H 0.06 0.52 6.92 -51.93 -0.36 0.16 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.71 6.27 -51.93 -0.33 0.39 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.80 6.68 -51.93 -0.35 0.45 16 29 H 0.34 5.22 7.36 -39.29 -0.29 4.93 16 30 H 0.02 0.41 6.15 -51.93 -0.32 0.09 16 31 H 0.06 1.01 6.32 -51.93 -0.33 0.68 16 32 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.12 3.12 6.26 -52.49 -0.33 2.79 16 36 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 38 H 0.08 0.67 6.77 -51.93 -0.35 0.32 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.38 6.36 -51.93 -0.33 1.05 16 42 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -27.94 329.24 -9.31 -37.25 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.31 Total: 9.28 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.56 Total: -28.63 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.03 Total: -31.05 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.41 Total: -5.72 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.94 -9.31 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399136872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.134 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds