Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 N 1.46894 * 110.45674 * 57.93957 * 3 2 1 5 5 C 1.46903 * 111.00386 * 53.64914 * 4 3 2 6 6 C 1.50696 * 109.47483 * 174.19709 * 5 4 3 7 7 C 1.38631 * 119.75144 * 269.72606 * 6 5 4 8 8 C 1.37620 * 120.24899 * 179.76241 * 7 6 5 9 9 C 1.40715 * 119.74505 * 0.49003 * 8 7 6 10 10 C 1.41391 * 120.24673 * 179.78688 * 9 8 7 11 11 H 1.08001 * 119.99692 * 28.21051 * 10 9 8 12 12 C 1.39944 * 120.00306 * 208.21308 * 10 9 8 13 13 N 1.30818 * 119.99789 * 12.91362 * 12 10 9 14 14 Si 1.86802 * 119.99881 * 192.92373 * 12 10 9 15 15 H 1.48497 * 109.47557 * 59.99493 * 14 12 10 16 16 H 1.48506 * 109.46843 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46892 * 299.99356 * 14 12 10 18 18 C 1.40720 * 119.51123 * 359.76577 * 9 8 7 19 19 C 1.37624 * 119.74173 * 359.97438 * 18 9 8 20 20 C 1.54509 * 110.51244 * 295.33567 * 3 2 1 21 21 C 1.54474 * 104.06153 * 241.35405 * 20 3 2 22 22 O 1.44422 * 104.80589 * 336.02025 * 21 20 3 23 23 C 1.44429 * 105.27615 * 40.51365 * 22 21 20 24 24 H 1.09000 * 109.47080 * 63.50783 * 1 2 3 25 25 H 1.09000 * 109.47157 * 183.51289 * 1 2 3 26 26 H 1.09005 * 109.47055 * 303.51054 * 1 2 3 27 27 H 1.09000 * 109.47125 * 240.00237 * 2 1 3 28 28 H 1.08999 * 109.47711 * 119.99780 * 2 1 3 29 29 H 1.00902 * 110.99974 * 289.69529 * 4 3 2 30 30 H 1.08999 * 109.46740 * 294.20020 * 5 4 3 31 31 H 1.08997 * 109.46616 * 54.19722 * 5 4 3 32 32 H 1.08003 * 119.87315 * 359.97438 * 7 6 5 33 33 H 1.07998 * 120.12949 * 180.27841 * 8 7 6 34 34 H 0.97005 * 119.99658 * 180.02562 * 13 12 10 35 35 H 1.07993 * 120.12909 * 180.02562 * 18 9 8 36 36 H 1.07998 * 119.87257 * 179.97438 * 19 18 9 37 37 H 1.08994 * 110.51318 * 122.70583 * 20 3 2 38 38 H 1.09004 * 110.62517 * 0.05429 * 20 3 2 39 39 H 1.09001 * 110.37242 * 94.85299 * 21 20 3 40 40 H 1.09005 * 110.37542 * 217.18414 * 21 20 3 41 41 H 1.08995 * 110.37310 * 200.65850 * 23 22 21 42 42 H 1.08994 * 110.37084 * 78.31977 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5223 2.1701 1.1664 5 6 1.8233 1.4511 2.4116 6 6 1.4059 2.2917 3.5906 7 6 2.3096 3.1756 4.1596 8 6 1.9378 3.9518 5.2335 9 6 0.6379 3.8380 5.7603 10 6 0.2461 4.6270 6.8662 11 1 0.7054 5.5904 7.0320 12 6 -0.7367 4.1597 7.7461 13 7 -1.1116 2.9072 7.7024 14 14 -1.5135 5.3246 8.9826 15 1 -2.1780 6.4402 8.2622 16 1 -2.5191 4.5895 9.7912 17 1 -0.4613 5.8702 9.8773 18 6 -0.2693 2.9336 5.1780 19 6 0.1227 2.1714 4.1013 20 6 1.6366 2.1594 -1.3079 21 6 2.9850 2.5358 -1.9609 22 8 3.9235 2.5902 -0.8645 23 6 3.5844 1.4706 -0.0174 24 1 -0.3633 0.4584 -0.9198 25 1 -0.3633 -1.0257 0.0630 26 1 -0.3633 0.5674 0.8569 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5316 2.3389 1.0768 30 1 1.2781 0.5074 2.4270 31 1 2.8937 1.2533 2.4672 32 1 3.3082 3.2579 3.7564 33 1 2.6420 4.6430 5.6724 34 1 -1.7931 2.5833 8.3120 35 1 -1.2695 2.8385 5.5740 36 1 -0.5718 1.4762 3.6530 37 1 1.0551 3.0549 -1.0890 38 1 1.0728 1.4880 -1.9557 39 1 3.2847 1.7729 -2.6794 40 1 2.9128 3.5087 -2.4472 41 1 3.9725 1.6252 0.9893 42 1 3.9761 0.5444 -0.4379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399136872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = -51.375681 kcal Electronic energy + Delta-G solvation = -21262.937623 eV Core-core repulsion = 18206.236038 eV Total energy + Delta-G solvation = -3056.701585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.02382 -39.44010 -37.30382 -35.61045 -33.52301 -31.48058 -31.17537 -31.02268 -29.28857 -27.71866 -25.14533 -24.20785 -23.31070 -22.84799 -21.54092 -20.14537 -19.19035 -17.79404 -17.13076 -16.89015 -16.33275 -16.24640 -16.01676 -15.59851 -15.39044 -14.97412 -14.83863 -14.21656 -13.98129 -13.79179 -13.63401 -13.43740 -13.26523 -12.98310 -12.81430 -12.67250 -12.39163 -12.37894 -12.13666 -12.02443 -11.87484 -11.77610 -11.46845 -11.33647 -11.23456 -11.01781 -10.63465 -9.37118 -9.23079 -9.08265 -8.58801 -6.33507 0.96779 1.16951 1.37806 1.49115 1.52571 2.22170 2.73032 3.10211 3.33486 3.53216 3.80176 3.92314 4.01230 4.20228 4.25904 4.32041 4.36231 4.46902 4.56133 4.58604 4.63457 4.66745 4.75179 4.80697 4.87973 4.90932 4.99304 5.04451 5.07764 5.13563 5.18466 5.24162 5.35936 5.39590 5.49477 5.73626 5.86879 5.99090 6.12350 6.23392 6.30612 6.42759 6.55392 6.72622 6.96939 7.05831 8.38199 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.003684 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.836021 B = 7598.719319 C = 8006.023665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.082 3.918 4 N -0.674 5.674 5 C 0.130 3.870 6 C -0.190 4.190 7 C -0.077 4.077 8 C -0.241 4.241 9 C 0.079 3.921 10 C -0.507 4.507 11 H 0.071 0.929 12 C 0.034 3.966 13 N -0.834 5.834 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.182 4.182 19 C -0.099 4.099 20 C -0.141 4.141 21 C 0.043 3.957 22 O -0.399 6.399 23 C 0.055 3.945 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.341 0.659 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.286 0.714 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -6.379 -16.085 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.182 4.182 3 C -0.009 4.009 4 N -0.306 5.306 5 C 0.002 3.998 6 C -0.192 4.192 7 C -0.096 4.096 8 C -0.261 4.261 9 C 0.077 3.923 10 C -0.537 4.537 11 H 0.089 0.911 12 C -0.179 4.179 13 N -0.460 5.460 14 Si 0.803 3.197 15 H -0.186 1.186 16 H -0.191 1.191 17 H -0.186 1.186 18 C -0.202 4.202 19 C -0.117 4.117 20 C -0.179 4.179 21 C -0.033 4.033 22 O -0.318 6.318 23 C -0.022 4.022 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.161 0.839 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.767 -5.985 -15.897 17.210 hybrid contribution -1.140 -0.269 0.990 1.534 sum 1.627 -6.254 -14.907 16.247 Atomic orbital electron populations 1.21799 0.95159 1.02214 1.01922 1.22139 0.96880 0.96110 1.03088 1.22398 0.94918 0.92566 0.91026 1.60721 1.21035 1.48327 1.00516 1.20491 0.99744 0.93053 0.86550 1.19358 0.94701 1.04112 1.01008 1.20631 0.98311 0.95562 0.95108 1.21210 0.96144 1.06005 1.02745 1.17950 0.90997 0.91706 0.91671 1.19796 1.20317 1.04499 1.09119 0.91083 1.26702 0.95091 0.96597 0.99527 1.69856 1.25658 1.15729 1.34797 0.85254 0.78428 0.78554 0.77441 1.18564 1.19093 1.18553 1.21252 0.99436 1.01729 0.97742 1.20767 0.95774 0.98817 0.96370 1.23063 0.98528 1.01268 0.95070 1.23537 0.87347 1.02853 0.89584 1.89115 1.55809 1.49567 1.37323 1.23571 0.93537 0.89703 0.95410 0.91326 0.91812 0.94151 0.89607 0.92016 0.83933 0.94484 0.91318 0.87436 0.89006 0.90345 0.88346 0.87668 0.90904 0.88105 0.90543 0.88714 0.90256 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.25 71.98 0.67 -2.06 16 2 C -0.14 -2.57 4.19 30.59 0.13 -2.44 16 3 C 0.08 1.81 0.63 4.55 0.00 1.81 16 4 N -0.67 -19.41 5.79 -469.13 -2.72 -22.13 16 5 C 0.13 4.16 4.73 85.56 0.40 4.56 16 6 C -0.19 -7.99 5.46 -19.68 -0.11 -8.10 16 7 C -0.08 -3.52 9.67 22.22 0.21 -3.31 16 8 C -0.24 -12.44 9.80 22.73 0.22 -12.21 16 9 C 0.08 4.42 5.55 -21.29 -0.12 4.30 16 10 C -0.51 -28.47 9.06 23.46 0.21 -28.26 16 11 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 12 C 0.03 1.79 5.21 85.26 0.44 2.23 16 13 N -0.83 -44.77 10.92 21.83 0.24 -44.53 16 14 Si 0.98 39.43 29.58 68.60 2.03 41.46 16 15 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 16 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 18 C -0.18 -9.75 8.66 22.73 0.20 -9.56 16 19 C -0.10 -4.51 9.67 22.22 0.21 -4.29 16 20 C -0.14 -2.61 5.97 31.61 0.19 -2.42 16 21 C 0.04 0.81 7.63 72.48 0.55 1.37 16 22 O -0.40 -10.76 11.65 -148.98 -1.74 -12.50 16 23 C 0.05 1.29 6.69 72.49 0.48 1.78 16 24 H 0.07 1.03 6.92 -2.39 -0.02 1.02 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.04 0.87 6.27 -2.38 -0.01 0.86 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.23 6.68 -2.39 -0.02 1.21 16 29 H 0.34 9.88 7.36 -89.69 -0.66 9.22 16 30 H 0.04 1.12 6.15 -2.39 -0.01 1.10 16 31 H 0.07 2.13 6.32 -2.39 -0.02 2.12 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.09 4.55 8.06 -2.91 -0.02 4.52 16 34 H 0.29 13.92 8.30 -92.70 -0.77 13.16 16 35 H 0.10 5.53 6.26 -2.91 -0.02 5.51 16 36 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 37 H 0.07 1.53 7.93 -2.39 -0.02 1.51 16 38 H 0.10 1.36 6.77 -2.39 -0.02 1.34 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.08 2.13 6.36 -2.39 -0.02 2.12 16 42 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 Total: -1.00 -62.13 329.24 1.88 -60.25 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.36 Total: 34.07 kcal Atomic # 6 Polarization: -60.32 SS G_CDS: 3.71 Total: -56.61 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -2.48 Total: -66.66 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.74 Total: -12.50 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -62.13 1.88 -60.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399136872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.870 kcal (2) G-P(sol) polarization free energy of solvation -62.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds