Wall clock time and date at job start Mon Mar 30 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 112.84967 * 2 1 4 4 C 1.53779 * 113.61767 * 228.69310 * 2 1 3 5 5 H 1.09004 * 113.61413 * 25.51465 * 4 2 1 6 6 O 1.42901 * 113.61713 * 156.33213 * 4 2 1 7 7 C 1.53950 * 87.11279 * 270.81096 * 4 2 1 8 8 C 1.53778 * 87.01802 * 334.63439 * 7 4 2 9 9 H 1.08999 * 113.61196 * 270.76712 * 8 7 4 10 10 N 1.46905 * 113.61153 * 139.95122 * 8 7 4 11 11 C 1.46907 * 110.99890 * 105.86344 * 10 8 7 12 12 C 1.50701 * 109.47008 * 180.02562 * 11 10 8 13 13 C 1.38632 * 119.74972 * 89.99820 * 12 11 10 14 14 C 1.37614 * 120.24682 * 179.97438 * 13 12 11 15 15 C 1.40717 * 119.74737 * 0.02562 * 14 13 12 16 16 C 1.41390 * 120.24858 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00139 * 26.43968 * 16 15 14 18 18 C 1.39944 * 120.00005 * 206.45031 * 16 15 14 19 19 N 1.30832 * 119.99762 * 203.54774 * 18 16 15 20 20 Si 1.86800 * 120.00303 * 23.54872 * 18 16 15 21 21 H 1.48510 * 109.46871 * 263.27449 * 20 18 16 22 22 H 1.48497 * 109.47161 * 23.27137 * 20 18 16 23 23 H 1.48496 * 109.47540 * 143.27579 * 20 18 16 24 24 C 1.40723 * 119.51030 * 0.27085 * 15 14 13 25 25 C 1.37622 * 119.73980 * 359.40609 * 24 15 14 26 26 H 1.09003 * 109.46909 * 288.80234 * 1 2 3 27 27 H 1.08995 * 109.47294 * 48.80635 * 1 2 3 28 28 H 1.09004 * 109.46758 * 168.80646 * 1 2 3 29 29 H 1.09001 * 109.47097 * 191.19898 * 3 2 1 30 30 H 1.08999 * 109.47162 * 311.20037 * 3 2 1 31 31 H 1.09007 * 109.47144 * 71.19807 * 3 2 1 32 32 H 0.96703 * 113.99670 * 180.02562 * 6 4 2 33 33 H 1.09004 * 113.66658 * 220.10059 * 7 4 2 34 34 H 1.09004 * 113.61290 * 89.15681 * 7 4 2 35 35 H 1.00897 * 110.99909 * 229.81306 * 10 8 7 36 36 H 1.08999 * 109.46976 * 59.99546 * 11 10 8 37 37 H 1.09001 * 109.46885 * 300.00026 * 11 10 8 38 38 H 1.07996 * 119.87384 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.12829 * 180.02562 * 14 13 12 40 40 H 0.96992 * 120.00357 * 353.15723 * 19 18 16 41 41 H 1.07995 * 120.12531 * 179.72073 * 24 15 14 42 42 H 1.07995 * 119.87126 * 180.31307 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0584 5 1 1.4951 -1.1093 -1.9142 6 8 3.4742 -0.5643 -1.4385 7 6 2.0950 -2.0438 0.0032 8 6 2.1461 -0.9280 1.0602 9 1 3.1586 -0.6477 1.3506 10 7 1.2680 -1.1689 2.2130 11 6 2.0470 -1.5606 3.3954 12 6 1.1145 -1.7993 4.5549 13 6 0.5897 -3.0649 4.7663 14 6 -0.2624 -3.2945 5.8222 15 6 -0.6009 -2.2386 6.6886 16 6 -1.4750 -2.4628 7.7771 17 1 -1.5520 -3.4475 8.2139 18 6 -2.2406 -1.4087 8.2883 19 7 -2.6785 -1.4558 9.5202 20 14 -2.6373 0.0654 7.2117 21 1 -1.6661 1.1547 7.4865 22 1 -2.5491 -0.3275 5.7823 23 1 -4.0120 0.5409 7.5104 24 6 -0.0672 -0.9567 6.4606 25 6 0.7883 -0.7517 5.4022 26 1 -0.3633 0.3312 0.9729 27 1 -0.3633 0.6768 -0.7733 28 1 -0.3633 -1.0082 -0.1995 29 1 3.1942 1.3533 -0.1996 30 1 1.6414 2.0076 -0.7732 31 1 1.9599 1.8734 0.9729 32 1 3.8668 -1.1455 -2.1043 33 1 2.9748 -2.6874 0.0048 34 1 1.1598 -2.6037 0.0041 35 1 0.6970 -0.3602 2.4079 36 1 2.7469 -0.7645 3.6494 37 1 2.5997 -2.4750 3.1798 38 1 0.8512 -3.8739 4.1003 39 1 -0.6698 -4.2814 5.9853 40 1 -2.5586 -2.2613 10.0471 41 1 -0.3239 -0.1381 7.1166 42 1 1.2031 0.2301 5.2283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399152331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:12 Heat of formation + Delta-G solvation = -23.794407 kcal Electronic energy + Delta-G solvation = -21063.022475 eV Core-core repulsion = 18007.516903 eV Total energy + Delta-G solvation = -3055.505571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30027 -37.93339 -35.82474 -34.34156 -33.15788 -30.67494 -29.94707 -29.64448 -27.44977 -26.32596 -23.56258 -22.72324 -22.03569 -21.49904 -19.89604 -18.50483 -18.09894 -17.19644 -16.01771 -15.36178 -15.09766 -14.79116 -14.47696 -14.15523 -13.84442 -13.59284 -13.29193 -12.90758 -12.67171 -12.51771 -12.34299 -12.27457 -12.10987 -11.96074 -11.66089 -11.49464 -11.12029 -10.98883 -10.84018 -10.55014 -10.39035 -10.10937 -10.05250 -9.85619 -9.63292 -9.33827 -8.95958 -8.10773 -7.70384 -7.63338 -7.20804 -4.50793 2.63097 2.75856 3.20879 3.36814 3.56537 3.81316 4.03089 4.38107 4.39676 4.54900 4.69341 4.79796 5.07806 5.15678 5.30469 5.47153 5.52883 5.62170 5.63076 5.74264 5.78430 5.84050 5.89084 5.90869 6.07314 6.08018 6.15943 6.17342 6.24712 6.38286 6.40912 6.62263 6.88080 7.06779 7.36545 7.38601 7.45562 7.52754 7.61784 7.71652 7.82196 7.91450 8.04614 8.43721 8.60683 8.80585 10.00057 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029924 B = 0.003916 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.491874 B = 7148.374018 C = 7630.596714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 C -0.134 4.134 4 C 0.083 3.917 5 H 0.066 0.934 6 O -0.550 6.550 7 C -0.155 4.155 8 C 0.073 3.927 9 H 0.070 0.930 10 N -0.671 5.671 11 C 0.124 3.876 12 C -0.219 4.219 13 C -0.056 4.056 14 C -0.221 4.221 15 C 0.101 3.899 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.044 3.956 19 N -0.815 5.815 20 Si 1.074 2.926 21 H -0.278 1.278 22 H -0.261 1.261 23 H -0.291 1.291 24 C -0.244 4.244 25 C -0.067 4.067 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.377 0.623 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.341 0.659 36 H 0.020 0.980 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.286 0.714 41 H 0.100 0.900 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 2.794 -18.588 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C -0.192 4.192 4 C 0.023 3.977 5 H 0.084 0.916 6 O -0.355 6.355 7 C -0.194 4.194 8 C -0.037 4.037 9 H 0.088 0.912 10 N -0.303 5.303 11 C -0.004 4.004 12 C -0.221 4.221 13 C -0.075 4.075 14 C -0.240 4.240 15 C 0.098 3.902 16 C -0.548 4.548 17 H 0.093 0.907 18 C -0.176 4.176 19 N -0.437 5.437 20 Si 0.900 3.100 21 H -0.205 1.205 22 H -0.185 1.185 23 H -0.218 1.218 24 C -0.263 4.263 25 C -0.086 4.086 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.224 0.776 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.161 0.839 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.383 4.062 -18.191 19.701 hybrid contribution 1.255 -1.332 0.128 1.834 sum 7.637 2.729 -18.062 19.799 Atomic orbital electron populations 1.21479 0.91896 1.02341 1.02252 1.22191 0.96024 0.94761 0.95126 1.21623 1.01578 0.94786 1.01168 1.22808 0.83776 0.95924 0.95158 0.91589 1.86434 1.29151 1.56835 1.63129 1.23725 1.02732 0.96879 0.96077 1.23007 0.95556 0.95031 0.90105 0.91226 1.60834 1.23372 1.41340 1.04788 1.20585 0.93291 0.98522 0.88002 1.18916 1.08476 0.94571 1.00089 1.20436 0.95772 0.95142 0.96120 1.21000 1.05861 0.98881 0.98294 1.17726 0.90715 0.91188 0.90602 1.20633 1.21515 0.98729 1.13948 0.90737 1.27298 0.92112 1.02551 0.95590 1.70532 1.38354 1.28912 1.05911 0.83573 0.75853 0.73917 0.76640 1.20497 1.18521 1.21810 1.20965 1.05338 0.97851 1.02156 1.20447 0.97012 0.96291 0.94830 0.91328 0.92739 0.91701 0.91510 0.92863 0.92933 0.77586 0.91634 0.88629 0.83912 0.96217 0.92000 0.89027 0.88752 0.90242 0.88207 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.46 37.16 0.31 -0.98 16 2 C -0.08 -0.88 1.26 -153.70 -0.19 -1.08 16 3 C -0.13 -1.46 9.04 37.16 0.34 -1.12 16 4 C 0.08 0.82 4.70 -25.83 -0.12 0.70 16 5 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 6 O -0.55 -5.26 12.13 -35.23 -0.43 -5.69 16 7 C -0.16 -1.73 7.37 -25.83 -0.19 -1.92 16 8 C 0.07 0.93 3.50 -66.90 -0.23 0.70 16 9 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 10 N -0.67 -10.04 6.03 -107.12 -0.65 -10.68 16 11 C 0.12 2.07 5.65 -4.97 -0.03 2.04 16 12 C -0.22 -4.46 5.42 -104.33 -0.56 -5.03 16 13 C -0.06 -1.20 9.67 -39.66 -0.38 -1.58 16 14 C -0.22 -5.30 9.80 -38.87 -0.38 -5.68 16 15 C 0.10 2.61 5.15 -106.82 -0.55 2.06 16 16 C -0.52 -14.24 9.40 -37.74 -0.35 -14.60 16 17 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 18 C 0.04 1.18 5.34 -17.34 -0.09 1.09 16 19 N -0.81 -22.15 13.65 55.55 0.76 -21.39 16 20 Si 1.07 24.63 24.98 -169.99 -4.25 20.39 16 21 H -0.28 -6.09 6.68 56.52 0.38 -5.72 16 22 H -0.26 -5.97 6.99 56.52 0.40 -5.57 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.24 -5.95 7.35 -38.87 -0.29 -6.23 16 25 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 26 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.69 7.35 -51.93 -0.38 0.31 16 29 H 0.07 0.77 6.97 -51.93 -0.36 0.41 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.38 1.97 9.12 45.56 0.42 2.38 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.11 7.66 -51.93 -0.40 0.72 16 35 H 0.34 5.17 7.00 -39.29 -0.28 4.90 16 36 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 37 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.29 7.56 8.73 -40.82 -0.36 7.20 16 41 H 0.10 2.43 4.67 -52.49 -0.25 2.18 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -28.25 334.51 -8.46 -36.71 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.83 Total: 9.09 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: -3.11 Total: -33.47 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.11 Total: -32.07 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.43 Total: -5.69 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.25 Total: 20.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.25 -8.46 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.918 kcal (2) G-P(sol) polarization free energy of solvation -28.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds