Wall clock time and date at job start Mon Mar 30 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 112.84967 * 2 1 4 4 C 1.53779 * 113.61767 * 228.69310 * 2 1 3 5 5 H 1.09004 * 113.61413 * 25.51465 * 4 2 1 6 6 O 1.42901 * 113.61713 * 156.33213 * 4 2 1 7 7 C 1.53950 * 87.11279 * 270.81096 * 4 2 1 8 8 C 1.53778 * 87.01802 * 334.63439 * 7 4 2 9 9 H 1.08999 * 113.61196 * 270.76712 * 8 7 4 10 10 N 1.46905 * 113.61153 * 139.95122 * 8 7 4 11 11 C 1.46907 * 110.99890 * 105.86344 * 10 8 7 12 12 C 1.50701 * 109.47008 * 180.02562 * 11 10 8 13 13 C 1.38632 * 119.74972 * 89.99820 * 12 11 10 14 14 C 1.37614 * 120.24682 * 179.97438 * 13 12 11 15 15 C 1.40717 * 119.74737 * 0.02562 * 14 13 12 16 16 C 1.41390 * 120.24858 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00139 * 26.43968 * 16 15 14 18 18 C 1.39944 * 120.00005 * 206.45031 * 16 15 14 19 19 N 1.30832 * 119.99762 * 203.54774 * 18 16 15 20 20 Si 1.86800 * 120.00303 * 23.54872 * 18 16 15 21 21 H 1.48510 * 109.46871 * 263.27449 * 20 18 16 22 22 H 1.48497 * 109.47161 * 23.27137 * 20 18 16 23 23 H 1.48496 * 109.47540 * 143.27579 * 20 18 16 24 24 C 1.40723 * 119.51030 * 0.27085 * 15 14 13 25 25 C 1.37622 * 119.73980 * 359.40609 * 24 15 14 26 26 H 1.09003 * 109.46909 * 288.80234 * 1 2 3 27 27 H 1.08995 * 109.47294 * 48.80635 * 1 2 3 28 28 H 1.09004 * 109.46758 * 168.80646 * 1 2 3 29 29 H 1.09001 * 109.47097 * 191.19898 * 3 2 1 30 30 H 1.08999 * 109.47162 * 311.20037 * 3 2 1 31 31 H 1.09007 * 109.47144 * 71.19807 * 3 2 1 32 32 H 0.96703 * 113.99670 * 180.02562 * 6 4 2 33 33 H 1.09004 * 113.66658 * 220.10059 * 7 4 2 34 34 H 1.09004 * 113.61290 * 89.15681 * 7 4 2 35 35 H 1.00897 * 110.99909 * 229.81306 * 10 8 7 36 36 H 1.08999 * 109.46976 * 59.99546 * 11 10 8 37 37 H 1.09001 * 109.46885 * 300.00026 * 11 10 8 38 38 H 1.07996 * 119.87384 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.12829 * 180.02562 * 14 13 12 40 40 H 0.96992 * 120.00357 * 353.15723 * 19 18 16 41 41 H 1.07995 * 120.12531 * 179.72073 * 24 15 14 42 42 H 1.07995 * 119.87126 * 180.31307 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0584 5 1 1.4951 -1.1093 -1.9142 6 8 3.4742 -0.5643 -1.4385 7 6 2.0950 -2.0438 0.0032 8 6 2.1461 -0.9280 1.0602 9 1 3.1586 -0.6477 1.3506 10 7 1.2680 -1.1689 2.2130 11 6 2.0470 -1.5606 3.3954 12 6 1.1145 -1.7993 4.5549 13 6 0.5897 -3.0649 4.7663 14 6 -0.2624 -3.2945 5.8222 15 6 -0.6009 -2.2386 6.6886 16 6 -1.4750 -2.4628 7.7771 17 1 -1.5520 -3.4475 8.2139 18 6 -2.2406 -1.4087 8.2883 19 7 -2.6785 -1.4558 9.5202 20 14 -2.6373 0.0654 7.2117 21 1 -1.6661 1.1547 7.4865 22 1 -2.5491 -0.3275 5.7823 23 1 -4.0120 0.5409 7.5104 24 6 -0.0672 -0.9567 6.4606 25 6 0.7883 -0.7517 5.4022 26 1 -0.3633 0.3312 0.9729 27 1 -0.3633 0.6768 -0.7733 28 1 -0.3633 -1.0082 -0.1995 29 1 3.1942 1.3533 -0.1996 30 1 1.6414 2.0076 -0.7732 31 1 1.9599 1.8734 0.9729 32 1 3.8668 -1.1455 -2.1043 33 1 2.9748 -2.6874 0.0048 34 1 1.1598 -2.6037 0.0041 35 1 0.6970 -0.3602 2.4079 36 1 2.7469 -0.7645 3.6494 37 1 2.5997 -2.4750 3.1798 38 1 0.8512 -3.8739 4.1003 39 1 -0.6698 -4.2814 5.9853 40 1 -2.5586 -2.2613 10.0471 41 1 -0.3239 -0.1381 7.1166 42 1 1.2031 0.2301 5.2283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399152331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:11 Heat of formation + Delta-G solvation = -42.497729 kcal Electronic energy + Delta-G solvation = -21063.833512 eV Core-core repulsion = 18007.516903 eV Total energy + Delta-G solvation = -3056.316608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17585 -39.70924 -36.82906 -35.86890 -34.67293 -32.05277 -31.48302 -31.11065 -28.27335 -27.92046 -24.93890 -23.77711 -23.36603 -23.08094 -21.67439 -20.07957 -19.34458 -18.03758 -17.23889 -16.65706 -16.19173 -16.09044 -16.02228 -15.86551 -15.32590 -14.97439 -14.52095 -14.18668 -14.08399 -13.80721 -13.69828 -13.27498 -13.22929 -13.12705 -12.89707 -12.79002 -12.61963 -12.51361 -12.11579 -11.98888 -11.80576 -11.61917 -11.40460 -11.22660 -10.88772 -10.85521 -10.52705 -9.64580 -9.48584 -9.28795 -9.13276 -6.55528 0.79961 0.90516 1.36121 1.55126 1.76759 2.17593 2.57917 3.10376 3.36711 3.51922 3.67080 3.76226 3.92027 4.15641 4.23829 4.28369 4.33320 4.43248 4.53490 4.57814 4.64663 4.75559 4.81438 4.83890 4.86346 5.01641 5.04288 5.07441 5.08847 5.18526 5.23484 5.25961 5.42161 5.52349 5.55541 5.56607 5.75438 5.86464 6.07018 6.17060 6.27582 6.44870 6.53847 6.69040 6.84577 6.95261 7.96572 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029924 B = 0.003916 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.491874 B = 7148.374018 C = 7630.596714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.094 3.906 5 H 0.084 0.916 6 O -0.564 6.564 7 C -0.153 4.153 8 C 0.067 3.933 9 H 0.061 0.939 10 N -0.674 5.674 11 C 0.129 3.871 12 C -0.193 4.193 13 C -0.058 4.058 14 C -0.235 4.235 15 C 0.077 3.923 16 C -0.558 4.558 17 H 0.043 0.957 18 C 0.012 3.988 19 N -0.842 5.842 20 Si 1.107 2.893 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.279 1.279 24 C -0.253 4.253 25 C -0.071 4.071 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.396 0.604 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.340 0.660 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.277 0.723 41 H 0.098 0.902 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 4.052 -22.009 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.081 4.081 3 C -0.189 4.189 4 C 0.034 3.966 5 H 0.102 0.898 6 O -0.372 6.372 7 C -0.191 4.191 8 C -0.042 4.042 9 H 0.079 0.921 10 N -0.306 5.306 11 C 0.001 3.999 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.254 4.254 15 C 0.074 3.926 16 C -0.588 4.588 17 H 0.062 0.938 18 C -0.201 4.201 19 N -0.466 5.466 20 Si 0.927 3.073 21 H -0.185 1.185 22 H -0.186 1.186 23 H -0.206 1.206 24 C -0.272 4.272 25 C -0.090 4.090 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.246 0.754 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.160 0.840 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.901 5.300 -21.624 23.625 hybrid contribution 1.008 -1.805 0.965 2.281 sum 8.910 3.495 -20.659 22.769 Atomic orbital electron populations 1.21458 0.91540 1.02575 1.02185 1.22210 0.96279 0.94729 0.94905 1.21585 1.01106 0.94875 1.01286 1.22687 0.84259 0.94373 0.95255 0.89815 1.86395 1.29045 1.57700 1.64036 1.23697 1.02658 0.96832 0.95941 1.23088 0.94789 0.96758 0.89613 0.92072 1.60786 1.23617 1.41606 1.04557 1.20520 0.92578 0.99537 0.87289 1.19422 1.06425 0.93575 1.00029 1.20745 0.94815 0.96607 0.95440 1.21176 1.06667 0.98554 0.98997 1.17894 0.91136 0.92711 0.90854 1.20603 1.24180 0.97910 1.16069 0.93841 1.28344 0.91347 1.04547 0.95903 1.70603 1.40593 1.28820 1.06609 0.83179 0.76751 0.72176 0.75157 1.18517 1.18592 1.20555 1.21099 1.05906 0.97080 1.03111 1.20805 0.96090 0.98216 0.93867 0.92364 0.91288 0.91887 0.92343 0.91892 0.93344 0.75359 0.91353 0.89025 0.84033 0.95126 0.91141 0.86350 0.88996 0.91208 0.88413 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.46 71.98 0.61 -1.57 16 2 C -0.08 -1.52 1.26 -51.66 -0.06 -1.59 16 3 C -0.13 -2.49 9.04 71.98 0.65 -1.84 16 4 C 0.09 1.53 4.70 31.18 0.15 1.68 16 5 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16 6 O -0.56 -8.90 12.13 -148.98 -1.81 -10.70 16 7 C -0.15 -2.91 7.37 31.18 0.23 -2.68 16 8 C 0.07 1.50 3.50 45.44 0.16 1.66 16 9 H 0.06 1.50 7.84 -2.39 -0.02 1.48 16 10 N -0.67 -17.91 6.03 -492.83 -2.97 -20.88 16 11 C 0.13 3.82 5.65 85.56 0.48 4.31 16 12 C -0.19 -7.27 5.42 -19.68 -0.11 -7.37 16 13 C -0.06 -2.34 9.67 22.22 0.21 -2.13 16 14 C -0.23 -11.24 9.80 22.73 0.22 -11.02 16 15 C 0.08 4.03 5.15 -21.29 -0.11 3.92 16 16 C -0.56 -32.11 9.40 23.46 0.22 -31.89 16 17 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 18 C 0.01 0.68 5.34 85.26 0.46 1.13 16 19 N -0.84 -47.79 13.65 21.83 0.30 -47.49 16 20 Si 1.11 49.84 24.98 68.60 1.71 51.55 16 21 H -0.26 -10.81 6.68 99.48 0.66 -10.14 16 22 H -0.26 -11.64 6.99 99.48 0.70 -10.95 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.25 -12.08 7.35 22.73 0.17 -11.92 16 25 C -0.07 -2.88 9.67 22.22 0.21 -2.66 16 26 H 0.06 1.18 6.75 -2.39 -0.02 1.16 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.16 7.35 -2.38 -0.02 1.15 16 29 H 0.06 1.21 6.97 -2.39 -0.02 1.19 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.40 2.76 9.12 -74.06 -0.68 2.09 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.85 7.66 -2.38 -0.02 1.83 16 35 H 0.34 9.22 7.00 -89.70 -0.63 8.59 16 36 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 37 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.28 15.61 8.73 -92.71 -0.81 14.80 16 41 H 0.10 4.67 4.67 -2.91 -0.01 4.66 16 42 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -61.83 334.51 0.35 -61.48 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.38 Total: 28.00 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 3.49 Total: -61.97 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -2.67 Total: -68.36 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -1.81 Total: -10.70 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.71 Total: 51.55 kcal Total: -61.83 0.35 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.985 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds