Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 112.85083 * 2 1 4 4 C 1.53779 * 113.61502 * 131.20412 * 2 1 3 5 5 H 1.09005 * 113.61693 * 25.42107 * 4 2 1 6 6 O 1.42904 * 113.61068 * 254.52559 * 4 2 1 7 7 C 1.53775 * 87.08563 * 139.97565 * 4 2 1 8 8 C 1.53790 * 113.61023 * 228.80515 * 2 1 3 9 9 H 1.08996 * 113.60897 * 334.56928 * 8 2 1 10 10 N 1.46900 * 113.61221 * 105.46862 * 8 2 1 11 11 C 1.46899 * 110.99994 * 204.99954 * 10 8 2 12 12 C 1.50702 * 109.47042 * 180.02562 * 11 10 8 13 13 C 1.38637 * 119.74617 * 269.72612 * 12 11 10 14 14 C 1.37622 * 120.24367 * 179.72340 * 13 12 11 15 15 C 1.40717 * 119.74583 * 0.56938 * 14 13 12 16 16 C 1.41393 * 120.24323 * 179.68396 * 15 14 13 17 17 H 1.08005 * 120.00136 * 24.40874 * 16 15 14 18 18 C 1.39948 * 119.99696 * 204.41109 * 16 15 14 19 19 N 1.30818 * 120.00311 * 17.85886 * 18 16 15 20 20 Si 1.86794 * 119.99766 * 197.85322 * 18 16 15 21 21 H 1.48503 * 109.47246 * 90.00421 * 20 18 16 22 22 H 1.48500 * 109.47315 * 209.99905 * 20 18 16 23 23 H 1.48500 * 109.47265 * 330.00284 * 20 18 16 24 24 C 1.40715 * 119.50839 * 359.70546 * 15 14 13 25 25 C 1.37619 * 119.75074 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.47641 * 69.66070 * 1 2 3 27 27 H 1.08995 * 109.47921 * 189.66904 * 1 2 3 28 28 H 1.09007 * 109.46977 * 309.66706 * 1 2 3 29 29 H 1.08998 * 109.47553 * 50.33862 * 3 2 1 30 30 H 1.09002 * 109.46893 * 170.33666 * 3 2 1 31 31 H 1.08995 * 109.47377 * 290.33231 * 3 2 1 32 32 H 0.96693 * 114.00110 * 179.97438 * 6 4 2 33 33 H 1.09004 * 113.61210 * 89.10764 * 7 4 2 34 34 H 1.09001 * 113.61470 * 219.93140 * 7 4 2 35 35 H 1.00908 * 110.99456 * 81.04729 * 10 8 2 36 36 H 1.09007 * 109.46909 * 300.00307 * 11 10 8 37 37 H 1.08994 * 109.47144 * 60.00024 * 11 10 8 38 38 H 1.07999 * 119.87890 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.12325 * 180.28052 * 14 13 12 40 40 H 0.97000 * 120.00581 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.12428 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.87631 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9282 1.0601 5 1 1.4944 -1.7524 1.3506 6 8 2.6954 -0.2320 2.1807 7 6 3.1922 -1.3137 0.0011 8 6 2.1459 -0.9281 -1.0604 9 1 1.4943 -1.7522 -1.3507 10 7 2.7105 -0.2124 -2.2123 11 6 2.7355 -1.0703 -3.4045 12 6 3.3203 -0.3038 -4.5627 13 6 2.4865 0.4269 -5.3952 14 6 3.0102 1.1352 -6.4525 15 6 4.3962 1.1061 -6.6942 16 6 4.9447 1.8246 -7.7815 17 1 4.4219 2.6807 -8.1818 18 6 6.1650 1.4262 -8.3389 19 7 6.6261 0.2232 -8.1120 20 14 7.1352 2.6123 -9.4071 21 1 8.0645 3.3982 -8.5561 22 1 7.9135 1.8479 -10.4146 23 1 6.1991 3.5338 -10.0998 24 6 5.2321 0.3565 -5.8460 25 6 4.6873 -0.3389 -4.7907 26 1 -0.3634 0.3572 -0.9636 27 1 -0.3635 -1.0130 0.1726 28 1 -0.3633 0.6560 0.7911 29 1 1.6608 1.9994 0.7911 30 1 3.1988 1.3512 0.1725 31 1 1.9362 1.8834 -0.9636 32 1 3.0840 -0.8104 2.8510 33 1 4.0710 -0.6688 0.0005 34 1 3.4453 -2.3740 0.0031 35 1 3.6318 0.1414 -2.0019 36 1 3.3470 -1.9505 -3.2059 37 1 1.7200 -1.3811 -3.6497 38 1 1.4225 0.4435 -5.2108 39 1 2.3594 1.7074 -7.0970 40 1 7.4718 -0.0530 -8.4987 41 1 6.2971 0.3269 -6.0226 42 1 5.3269 -0.9152 -4.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399152333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = -22.721520 kcal Electronic energy + Delta-G solvation = -20866.674580 eV Core-core repulsion = 17811.215532 eV Total energy + Delta-G solvation = -3055.459048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20373 -37.65839 -35.77055 -34.30798 -33.03383 -30.55376 -29.60228 -29.18811 -27.33598 -26.32061 -23.70934 -22.67023 -22.29480 -20.96363 -19.87577 -18.35265 -17.49396 -17.26897 -15.56231 -15.21110 -15.20148 -14.57801 -14.45191 -13.96719 -13.75837 -13.47718 -13.18892 -12.80010 -12.56904 -12.45770 -12.05472 -11.98259 -11.91507 -11.81214 -11.55658 -11.40134 -11.07967 -11.00402 -10.75399 -10.70197 -10.50267 -10.41777 -10.11932 -9.74692 -9.49981 -9.36175 -9.11685 -7.95361 -7.42352 -7.27296 -6.75141 -4.33300 2.75499 3.07361 3.11243 3.11448 3.19780 3.94026 4.04003 4.45930 4.51953 4.55808 4.69966 4.78098 5.07592 5.29648 5.34166 5.48450 5.59856 5.72892 5.78938 5.80759 5.87903 5.94336 5.97143 6.06153 6.13950 6.26963 6.32422 6.40188 6.40381 6.45020 6.63777 6.96765 7.09348 7.30022 7.40302 7.46665 7.53703 7.63887 7.77139 7.92041 8.07862 8.16815 8.32843 8.66244 8.91721 9.00199 10.19452 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.003292 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.558848 B = 8502.979711 C = 8644.463725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.109 4.109 4 C 0.081 3.919 5 H 0.077 0.923 6 O -0.555 6.555 7 C -0.199 4.199 8 C 0.076 3.924 9 H 0.093 0.907 10 N -0.665 5.665 11 C 0.124 3.876 12 C -0.214 4.214 13 C -0.068 4.068 14 C -0.228 4.228 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.166 4.166 25 C -0.095 4.095 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.371 0.629 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.343 0.657 36 H 0.018 0.982 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.280 0.720 41 H 0.116 0.884 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -3.591 14.418 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.063 4.063 3 C -0.166 4.166 4 C 0.021 3.979 5 H 0.094 0.906 6 O -0.359 6.359 7 C -0.238 4.238 8 C -0.036 4.036 9 H 0.111 0.889 10 N -0.295 5.295 11 C -0.003 4.003 12 C -0.215 4.215 13 C -0.087 4.087 14 C -0.248 4.248 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.419 5.419 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.186 4.186 25 C -0.114 4.114 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.218 0.782 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.258 -2.935 13.807 15.441 hybrid contribution 1.479 -0.814 0.001 1.689 sum -4.779 -3.750 13.808 15.085 Atomic orbital electron populations 1.21716 0.94169 1.01087 1.02201 1.22133 0.95079 0.96339 0.92774 1.21228 1.00205 0.93540 1.01670 1.23419 0.94822 0.94833 0.84778 0.90567 1.86556 1.79043 1.37240 1.33036 1.24405 0.99167 1.01505 0.98756 1.22886 0.96115 0.95263 0.89307 0.88885 1.60497 1.29259 1.37142 1.02614 1.20590 0.98861 0.92428 0.88440 1.18893 0.93602 1.08765 1.00276 1.20329 0.96835 0.96662 0.94890 1.20976 0.94981 1.07320 1.01521 1.17621 0.90602 0.89733 0.91044 1.19616 1.03779 1.12482 1.13443 0.90468 1.25906 0.97279 0.94836 0.96120 1.69828 1.18717 1.16485 1.36916 0.86327 0.79890 0.80987 0.79594 1.19286 1.20372 1.18616 1.21272 0.99791 1.02190 0.95301 1.20516 0.93627 0.99569 0.97715 0.91727 0.93150 0.92768 0.93341 0.92820 0.91191 0.78223 0.89136 0.91753 0.83722 0.96352 0.92114 0.89494 0.89143 0.90945 0.86596 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.18 37.16 0.34 -1.11 16 2 C -0.06 -0.74 1.34 -153.70 -0.21 -0.94 16 3 C -0.11 -1.43 7.76 37.15 0.29 -1.14 16 4 C 0.08 0.84 4.63 -25.92 -0.12 0.72 16 5 H 0.08 0.68 7.99 -51.93 -0.41 0.26 16 6 O -0.55 -5.82 12.79 -35.23 -0.45 -6.27 16 7 C -0.20 -2.22 7.19 -25.83 -0.19 -2.40 16 8 C 0.08 0.95 3.64 -66.80 -0.24 0.71 16 9 H 0.09 1.13 7.83 -51.93 -0.41 0.72 16 10 N -0.67 -10.27 5.57 -107.03 -0.60 -10.86 16 11 C 0.12 2.15 5.65 -4.98 -0.03 2.12 16 12 C -0.21 -4.59 5.41 -104.33 -0.56 -5.15 16 13 C -0.07 -1.54 9.67 -39.66 -0.38 -1.93 16 14 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 15 C 0.11 3.02 5.58 -106.83 -0.60 2.43 16 16 C -0.46 -12.42 9.05 -37.74 -0.34 -12.76 16 17 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 19 N -0.79 -20.62 10.95 55.55 0.61 -20.01 16 20 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 24 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 25 C -0.10 -2.20 9.67 -39.66 -0.38 -2.58 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.47 7.98 -51.93 -0.41 0.06 16 28 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.73 7.22 -51.93 -0.38 0.35 16 31 H 0.07 1.00 7.83 -51.93 -0.41 0.60 16 32 H 0.37 2.28 9.12 45.56 0.42 2.70 16 33 H 0.09 1.10 7.33 -51.93 -0.38 0.72 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.34 5.49 8.12 -39.29 -0.32 5.17 16 36 H 0.02 0.31 8.08 -51.92 -0.42 -0.11 16 37 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 42 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -27.98 341.28 -9.53 -37.51 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.97 Total: 11.68 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -3.23 Total: -30.93 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.01 Total: -30.87 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.45 Total: -6.27 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.98 -9.53 -37.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds