Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 112.85083 * 2 1 4 4 C 1.53779 * 113.61502 * 131.20412 * 2 1 3 5 5 H 1.09005 * 113.61693 * 25.42107 * 4 2 1 6 6 O 1.42904 * 113.61068 * 254.52559 * 4 2 1 7 7 C 1.53775 * 87.08563 * 139.97565 * 4 2 1 8 8 C 1.53790 * 113.61023 * 228.80515 * 2 1 3 9 9 H 1.08996 * 113.60897 * 334.56928 * 8 2 1 10 10 N 1.46900 * 113.61221 * 105.46862 * 8 2 1 11 11 C 1.46899 * 110.99994 * 204.99954 * 10 8 2 12 12 C 1.50702 * 109.47042 * 180.02562 * 11 10 8 13 13 C 1.38637 * 119.74617 * 269.72612 * 12 11 10 14 14 C 1.37622 * 120.24367 * 179.72340 * 13 12 11 15 15 C 1.40717 * 119.74583 * 0.56938 * 14 13 12 16 16 C 1.41393 * 120.24323 * 179.68396 * 15 14 13 17 17 H 1.08005 * 120.00136 * 24.40874 * 16 15 14 18 18 C 1.39948 * 119.99696 * 204.41109 * 16 15 14 19 19 N 1.30818 * 120.00311 * 17.85886 * 18 16 15 20 20 Si 1.86794 * 119.99766 * 197.85322 * 18 16 15 21 21 H 1.48503 * 109.47246 * 90.00421 * 20 18 16 22 22 H 1.48500 * 109.47315 * 209.99905 * 20 18 16 23 23 H 1.48500 * 109.47265 * 330.00284 * 20 18 16 24 24 C 1.40715 * 119.50839 * 359.70546 * 15 14 13 25 25 C 1.37619 * 119.75074 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.47641 * 69.66070 * 1 2 3 27 27 H 1.08995 * 109.47921 * 189.66904 * 1 2 3 28 28 H 1.09007 * 109.46977 * 309.66706 * 1 2 3 29 29 H 1.08998 * 109.47553 * 50.33862 * 3 2 1 30 30 H 1.09002 * 109.46893 * 170.33666 * 3 2 1 31 31 H 1.08995 * 109.47377 * 290.33231 * 3 2 1 32 32 H 0.96693 * 114.00110 * 179.97438 * 6 4 2 33 33 H 1.09004 * 113.61210 * 89.10764 * 7 4 2 34 34 H 1.09001 * 113.61470 * 219.93140 * 7 4 2 35 35 H 1.00908 * 110.99456 * 81.04729 * 10 8 2 36 36 H 1.09007 * 109.46909 * 300.00307 * 11 10 8 37 37 H 1.08994 * 109.47144 * 60.00024 * 11 10 8 38 38 H 1.07999 * 119.87890 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.12325 * 180.28052 * 14 13 12 40 40 H 0.97000 * 120.00581 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.12428 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.87631 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9282 1.0601 5 1 1.4944 -1.7524 1.3506 6 8 2.6954 -0.2320 2.1807 7 6 3.1922 -1.3137 0.0011 8 6 2.1459 -0.9281 -1.0604 9 1 1.4943 -1.7522 -1.3507 10 7 2.7105 -0.2124 -2.2123 11 6 2.7355 -1.0703 -3.4045 12 6 3.3203 -0.3038 -4.5627 13 6 2.4865 0.4269 -5.3952 14 6 3.0102 1.1352 -6.4525 15 6 4.3962 1.1061 -6.6942 16 6 4.9447 1.8246 -7.7815 17 1 4.4219 2.6807 -8.1818 18 6 6.1650 1.4262 -8.3389 19 7 6.6261 0.2232 -8.1120 20 14 7.1352 2.6123 -9.4071 21 1 8.0645 3.3982 -8.5561 22 1 7.9135 1.8479 -10.4146 23 1 6.1991 3.5338 -10.0998 24 6 5.2321 0.3565 -5.8460 25 6 4.6873 -0.3389 -4.7907 26 1 -0.3634 0.3572 -0.9636 27 1 -0.3635 -1.0130 0.1726 28 1 -0.3633 0.6560 0.7911 29 1 1.6608 1.9994 0.7911 30 1 3.1988 1.3512 0.1725 31 1 1.9362 1.8834 -0.9636 32 1 3.0840 -0.8104 2.8510 33 1 4.0710 -0.6688 0.0005 34 1 3.4453 -2.3740 0.0031 35 1 3.6318 0.1414 -2.0019 36 1 3.3470 -1.9505 -3.2059 37 1 1.7200 -1.3811 -3.6497 38 1 1.4225 0.4435 -5.2108 39 1 2.3594 1.7074 -7.0970 40 1 7.4718 -0.0530 -8.4987 41 1 6.2971 0.3269 -6.0226 42 1 5.3269 -0.9152 -4.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399152333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = -39.886385 kcal Electronic energy + Delta-G solvation = -20867.418904 eV Core-core repulsion = 17811.215532 eV Total energy + Delta-G solvation = -3056.203372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12965 -39.46513 -36.80917 -35.82990 -34.53791 -31.87505 -31.16641 -30.87215 -28.36119 -27.92818 -25.18244 -23.65555 -23.38115 -22.85400 -21.63496 -19.34231 -19.19905 -18.29589 -17.22479 -16.52504 -16.20457 -15.90103 -15.76627 -15.56722 -15.21822 -14.83841 -14.31028 -14.21912 -13.81257 -13.77901 -13.56548 -13.41269 -13.07191 -12.99734 -12.92681 -12.77833 -12.66104 -12.43638 -12.37210 -12.07042 -11.65085 -11.62040 -11.40925 -11.23968 -11.03014 -10.98369 -10.55416 -9.37107 -9.22629 -9.04777 -8.63179 -6.32249 0.95913 1.17838 1.37531 1.50644 1.51764 2.20943 2.69990 3.20170 3.54277 3.62606 3.66922 3.80767 3.96881 4.06609 4.32738 4.36398 4.43052 4.51229 4.60033 4.62889 4.71046 4.74188 4.86173 4.92384 4.94864 5.03719 5.06428 5.16921 5.18308 5.19005 5.26721 5.39468 5.49618 5.50177 5.60971 5.73143 5.98252 6.12131 6.25161 6.32387 6.42008 6.54216 6.72440 6.95979 6.98204 7.06244 8.33855 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.003292 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.558848 B = 8502.979711 C = 8644.463725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.104 4.104 4 C 0.092 3.908 5 H 0.101 0.899 6 O -0.572 6.572 7 C -0.194 4.194 8 C 0.072 3.928 9 H 0.105 0.895 10 N -0.672 5.672 11 C 0.133 3.867 12 C -0.199 4.199 13 C -0.072 4.072 14 C -0.245 4.245 15 C 0.079 3.921 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.190 4.190 25 C -0.098 4.098 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.391 0.609 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.338 0.662 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -4.586 15.962 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.071 4.071 3 C -0.161 4.161 4 C 0.033 3.967 5 H 0.119 0.881 6 O -0.379 6.379 7 C -0.233 4.233 8 C -0.039 4.039 9 H 0.123 0.877 10 N -0.302 5.302 11 C 0.005 3.995 12 C -0.200 4.200 13 C -0.091 4.091 14 C -0.265 4.265 15 C 0.077 3.923 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.452 5.452 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.183 1.183 24 C -0.210 4.210 25 C -0.117 4.117 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.974 -3.947 15.382 17.344 hybrid contribution 1.608 -0.563 -0.323 1.734 sum -5.366 -4.510 15.059 16.611 Atomic orbital electron populations 1.21693 0.93222 1.02266 1.01703 1.22170 0.95868 0.95525 0.93539 1.21138 0.99715 0.94691 1.00602 1.23353 0.94381 0.94551 0.84424 0.88128 1.86508 1.79295 1.38512 1.33589 1.24320 0.98533 1.02010 0.98450 1.23006 0.96801 0.95625 0.88452 0.87696 1.60408 1.29088 1.37460 1.03237 1.20486 0.99299 0.92145 0.87574 1.19356 0.92862 1.07065 1.00753 1.20642 0.98332 0.95968 0.94159 1.21177 0.94524 1.08151 1.02651 1.17955 0.91716 0.90799 0.91820 1.19842 1.05608 1.13248 1.14715 0.90966 1.26736 0.97611 0.96323 0.97231 1.69876 1.19371 1.17951 1.38049 0.85214 0.78200 0.78530 0.77813 1.18735 1.19129 1.18304 1.21245 0.99062 1.03878 0.96793 1.20772 0.94865 0.99035 0.97043 0.92837 0.91306 0.92526 0.93220 0.93772 0.93005 0.75953 0.90519 0.90388 0.84288 0.95342 0.90873 0.86978 0.88919 0.90208 0.88395 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.18 71.98 0.66 -1.83 16 2 C -0.07 -1.50 1.34 -51.66 -0.07 -1.57 16 3 C -0.10 -2.64 7.76 71.98 0.56 -2.08 16 4 C 0.09 1.62 4.63 31.12 0.14 1.76 16 5 H 0.10 1.32 7.99 -2.38 -0.02 1.30 16 6 O -0.57 -10.46 12.79 -148.98 -1.91 -12.37 16 7 C -0.19 -3.78 7.19 31.18 0.22 -3.56 16 8 C 0.07 1.61 3.64 45.50 0.17 1.77 16 9 H 0.11 2.14 7.83 -2.39 -0.02 2.12 16 10 N -0.67 -19.47 5.57 -492.53 -2.74 -22.21 16 11 C 0.13 4.27 5.65 85.56 0.48 4.75 16 12 C -0.20 -8.31 5.41 -19.67 -0.11 -8.42 16 13 C -0.07 -3.22 9.67 22.22 0.21 -3.01 16 14 C -0.25 -12.47 9.80 22.73 0.22 -12.24 16 15 C 0.08 4.42 5.58 -21.29 -0.12 4.30 16 16 C -0.50 -28.14 9.05 23.46 0.21 -27.93 16 17 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 18 C 0.04 1.84 5.14 85.26 0.44 2.28 16 19 N -0.83 -44.14 10.95 21.83 0.24 -43.90 16 20 Si 0.98 39.15 29.59 68.60 2.03 41.18 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 C -0.19 -10.21 8.70 22.73 0.20 -10.01 16 25 C -0.10 -4.53 9.67 22.22 0.21 -4.32 16 26 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.07 1.04 7.98 -2.39 -0.02 1.02 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.17 7.22 -2.39 -0.02 1.16 16 31 H 0.05 1.47 7.83 -2.39 -0.02 1.45 16 32 H 0.39 3.64 9.12 -74.06 -0.68 2.96 16 33 H 0.08 1.73 7.33 -2.39 -0.02 1.72 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.34 10.41 8.12 -89.69 -0.73 9.68 16 36 H 0.03 0.87 8.08 -2.38 -0.02 0.85 16 37 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 38 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.09 4.51 8.06 -2.91 -0.02 4.48 16 40 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 41 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 42 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -61.72 341.28 0.67 -61.04 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.39 Total: 36.36 kcal Atomic # 6 Polarization: -63.55 SS G_CDS: 3.44 Total: -60.11 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -2.50 Total: -66.11 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.91 Total: -12.37 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -61.72 0.67 -61.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.158 kcal (2) G-P(sol) polarization free energy of solvation -61.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds