Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.90646 * 2 1 4 4 C 1.53780 * 113.61720 * 131.25402 * 2 1 3 5 5 H 1.09002 * 113.68994 * 334.56049 * 4 2 1 6 6 O 1.42901 * 113.61513 * 203.66365 * 4 2 1 7 7 C 1.53788 * 87.08059 * 89.11566 * 4 2 1 8 8 C 1.53782 * 113.61405 * 228.75372 * 2 1 3 9 9 H 1.09001 * 113.61356 * 156.33291 * 8 2 1 10 10 N 1.46900 * 113.61533 * 25.43068 * 8 2 1 11 11 C 1.46893 * 111.00192 * 158.00040 * 10 8 2 12 12 C 1.50700 * 109.47554 * 179.97438 * 11 10 8 13 13 C 1.38627 * 119.75065 * 269.73044 * 12 11 10 14 14 C 1.37629 * 120.24562 * 179.71670 * 13 12 11 15 15 C 1.40709 * 119.74480 * 0.57255 * 14 13 12 16 16 C 1.41398 * 120.24569 * 179.68155 * 15 14 13 17 17 H 1.07996 * 119.99992 * 204.40347 * 16 15 14 18 18 C 1.39950 * 119.99618 * 24.40161 * 16 15 14 19 19 N 1.30816 * 119.99899 * 17.85357 * 18 16 15 20 20 Si 1.86800 * 119.99705 * 197.84540 * 18 16 15 21 21 H 1.48506 * 109.46965 * 60.00410 * 20 18 16 22 22 H 1.48497 * 109.47080 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47470 * 300.00413 * 20 18 16 24 24 C 1.40722 * 119.51451 * 359.70133 * 15 14 13 25 25 C 1.37617 * 119.74062 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47199 * 308.24856 * 1 2 3 27 27 H 1.09004 * 109.47567 * 68.25409 * 1 2 3 28 28 H 1.09001 * 109.47311 * 188.25035 * 1 2 3 29 29 H 1.08994 * 109.47013 * 171.74249 * 3 2 1 30 30 H 1.08996 * 109.47050 * 291.75315 * 3 2 1 31 31 H 1.08999 * 109.46537 * 51.74967 * 3 2 1 32 32 H 0.96701 * 113.99651 * 182.99384 * 6 4 2 33 33 H 1.09000 * 113.60907 * 139.98159 * 7 4 2 34 34 H 1.09001 * 113.61043 * 270.88480 * 7 4 2 35 35 H 1.00898 * 111.00295 * 34.03994 * 10 8 2 36 36 H 1.09004 * 109.47237 * 299.99672 * 11 10 8 37 37 H 1.09003 * 109.47289 * 59.99769 * 11 10 8 38 38 H 1.08003 * 119.88083 * 359.97146 * 13 12 11 39 39 H 1.07997 * 120.12325 * 180.27123 * 14 13 12 40 40 H 0.97007 * 119.99921 * 179.97438 * 19 18 16 41 41 H 1.07993 * 120.13037 * 180.02562 * 24 15 14 42 42 H 1.08003 * 119.87708 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1461 -0.9291 1.0593 5 1 1.4956 -1.1095 1.9152 6 8 3.4742 -0.5631 1.4389 7 6 2.0930 -2.0426 -0.0002 8 6 2.1460 -0.9290 -1.0594 9 1 3.1590 -0.6497 -1.3491 10 7 1.2680 -1.1709 -2.2120 11 6 2.0436 -1.5973 -3.3844 12 6 1.1111 -1.8361 -4.5440 13 6 0.5662 -3.0955 -4.7405 14 6 -0.2910 -3.3235 -5.7927 15 6 -0.6042 -2.2753 -6.6777 16 6 -1.4784 -2.4995 -7.7663 17 1 -1.4236 -1.8692 -8.6415 18 6 -2.4147 -3.5381 -7.7093 19 7 -2.7306 -4.0715 -6.5574 20 14 -3.2134 -4.1626 -9.2783 21 1 -2.1652 -4.6744 -10.1974 22 1 -4.1605 -5.2580 -8.9495 23 1 -3.9487 -3.0523 -9.9353 24 6 -0.0407 -1.0024 -6.4718 25 6 0.8096 -0.7960 -5.4096 26 1 -0.3634 0.6362 0.8071 27 1 -0.3634 0.3807 -0.9545 28 1 -0.3634 -1.0170 0.1475 29 1 3.2037 1.3482 0.1476 30 1 1.9161 1.8923 -0.9544 31 1 1.6808 1.9916 0.8071 32 1 3.8839 -1.1697 2.0707 33 1 2.9718 -2.6874 -0.0002 34 1 1.1568 -2.6009 -0.0001 35 1 0.7140 -0.3542 -2.4224 36 1 2.7603 -0.8196 -3.6483 37 1 2.5768 -2.5191 -3.1517 38 1 0.8121 -3.8998 -4.0629 39 1 -0.7178 -4.3043 -5.9414 40 1 -3.3799 -4.7912 -6.5178 41 1 -0.2746 -0.1907 -7.1447 42 1 1.2436 0.1800 -5.2498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399152334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = -20.263635 kcal Electronic energy + Delta-G solvation = -20923.906556 eV Core-core repulsion = 17868.554090 eV Total energy + Delta-G solvation = -3055.352466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22993 -37.64732 -35.72929 -34.27286 -32.98011 -30.49891 -29.69594 -29.16673 -27.37698 -26.38843 -23.77648 -22.77806 -22.04758 -20.91638 -19.85557 -18.39764 -17.26368 -17.07448 -15.84659 -15.33554 -15.14883 -14.94966 -14.12789 -14.10823 -13.68940 -13.45149 -13.06889 -12.70793 -12.63100 -12.33951 -12.28405 -11.98503 -11.91862 -11.86632 -11.51763 -11.47119 -11.05182 -10.98770 -10.89856 -10.50223 -10.46443 -10.35039 -10.01542 -9.73798 -9.46935 -9.32248 -9.09070 -7.97861 -7.40541 -7.26719 -6.73131 -4.32175 2.78673 3.07422 3.10114 3.11368 3.21685 3.88313 3.94679 4.46240 4.50658 4.61883 4.78899 4.87636 5.17520 5.22980 5.38580 5.59644 5.69077 5.71619 5.74772 5.86573 5.90234 5.94821 5.97060 5.99713 6.14994 6.19483 6.31167 6.39170 6.44153 6.48806 6.50834 6.99362 7.09915 7.33515 7.39743 7.50038 7.55128 7.64938 7.79067 7.94485 8.08733 8.19373 8.33638 8.67923 8.92615 9.01500 10.21104 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036304 B = 0.003333 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.079361 B = 8399.878227 C = 8518.210819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.133 4.133 4 C 0.083 3.917 5 H 0.066 0.934 6 O -0.551 6.551 7 C -0.156 4.156 8 C 0.073 3.927 9 H 0.068 0.932 10 N -0.670 5.670 11 C 0.124 3.876 12 C -0.212 4.212 13 C -0.079 4.079 14 C -0.168 4.168 15 C 0.112 3.888 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.792 5.792 20 Si 0.907 3.093 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.228 4.228 25 C -0.086 4.086 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.377 0.623 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.340 0.660 36 H 0.017 0.983 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 41 H 0.090 0.910 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 3.952 12.811 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C -0.190 4.190 4 C 0.023 3.977 5 H 0.084 0.916 6 O -0.356 6.356 7 C -0.195 4.195 8 C -0.037 4.037 9 H 0.086 0.914 10 N -0.301 5.301 11 C -0.003 4.003 12 C -0.214 4.214 13 C -0.098 4.098 14 C -0.187 4.187 15 C 0.110 3.890 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.141 4.141 19 N -0.417 5.417 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.247 4.247 25 C -0.105 4.105 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.160 0.840 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.213 3.636 12.689 14.588 hybrid contribution 0.048 0.005 -0.557 0.559 sum 6.261 3.641 12.132 14.129 Atomic orbital electron populations 1.21465 0.91851 1.02535 1.02054 1.22176 0.96043 0.94684 0.95066 1.21604 1.01469 0.94867 1.01081 1.22780 0.83753 0.96039 0.95126 0.91641 1.86433 1.28787 1.54052 1.66316 1.23708 1.02790 0.96890 0.96115 1.23004 0.95488 0.94980 0.90242 0.91393 1.60814 1.24376 1.39818 1.05130 1.20590 0.93306 0.98165 0.88281 1.18920 1.07842 0.95148 0.99454 1.20493 0.97193 0.95048 0.97059 1.21308 1.00310 0.99575 0.97498 1.17608 0.89578 0.90192 0.91624 1.19563 1.14759 1.12762 1.02374 0.90591 1.25899 0.95892 0.95230 0.97113 1.69828 1.25880 1.20474 1.25491 0.86394 0.79167 0.78978 0.82317 1.18864 1.20355 1.19053 1.20925 1.06145 0.96694 1.00953 1.20356 0.98348 0.96015 0.95773 0.92840 0.91384 0.91575 0.91632 0.92970 0.92898 0.77628 0.91682 0.88558 0.83979 0.96528 0.92172 0.89546 0.86562 0.90864 0.89225 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.39 37.16 0.31 -1.09 16 2 C -0.08 -0.94 1.26 -153.70 -0.19 -1.13 16 3 C -0.13 -1.53 8.99 37.16 0.33 -1.19 16 4 C 0.08 0.89 4.71 -25.92 -0.12 0.76 16 5 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 6 O -0.55 -5.65 12.17 -35.23 -0.43 -6.08 16 7 C -0.16 -1.90 7.36 -25.91 -0.19 -2.09 16 8 C 0.07 1.00 3.49 -66.90 -0.23 0.77 16 9 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 10 N -0.67 -10.85 5.99 -107.13 -0.64 -11.49 16 11 C 0.12 2.24 5.67 -4.98 -0.03 2.22 16 12 C -0.21 -4.63 5.42 -104.33 -0.56 -5.19 16 13 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 14 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 15 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 16 C -0.47 -12.48 9.05 -37.74 -0.34 -12.82 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 19 N -0.79 -20.66 10.95 55.55 0.61 -20.05 16 20 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 25 C -0.09 -1.93 9.67 -39.66 -0.38 -2.32 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.84 6.93 -51.93 -0.36 0.48 16 28 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 29 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.38 2.23 9.12 45.56 0.42 2.64 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.24 7.63 -51.93 -0.40 0.84 16 35 H 0.34 5.59 7.15 -39.29 -0.28 5.31 16 36 H 0.02 0.29 8.07 -51.93 -0.42 -0.13 16 37 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 39 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 40 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 42 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -28.13 339.33 -9.45 -37.58 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.87 Total: 12.01 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -3.20 Total: -30.83 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: -0.03 Total: -31.54 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.43 Total: -6.08 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.13 -9.45 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.311 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds