Wall clock time and date at job start Mon Mar 30 2020 01:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.90646 * 2 1 4 4 C 1.53780 * 113.61720 * 131.25402 * 2 1 3 5 5 H 1.09002 * 113.68994 * 334.56049 * 4 2 1 6 6 O 1.42901 * 113.61513 * 203.66365 * 4 2 1 7 7 C 1.53788 * 87.08059 * 89.11566 * 4 2 1 8 8 C 1.53782 * 113.61405 * 228.75372 * 2 1 3 9 9 H 1.09001 * 113.61356 * 156.33291 * 8 2 1 10 10 N 1.46900 * 113.61533 * 25.43068 * 8 2 1 11 11 C 1.46893 * 111.00192 * 158.00040 * 10 8 2 12 12 C 1.50700 * 109.47554 * 179.97438 * 11 10 8 13 13 C 1.38627 * 119.75065 * 269.73044 * 12 11 10 14 14 C 1.37629 * 120.24562 * 179.71670 * 13 12 11 15 15 C 1.40709 * 119.74480 * 0.57255 * 14 13 12 16 16 C 1.41398 * 120.24569 * 179.68155 * 15 14 13 17 17 H 1.07996 * 119.99992 * 204.40347 * 16 15 14 18 18 C 1.39950 * 119.99618 * 24.40161 * 16 15 14 19 19 N 1.30816 * 119.99899 * 17.85357 * 18 16 15 20 20 Si 1.86800 * 119.99705 * 197.84540 * 18 16 15 21 21 H 1.48506 * 109.46965 * 60.00410 * 20 18 16 22 22 H 1.48497 * 109.47080 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47470 * 300.00413 * 20 18 16 24 24 C 1.40722 * 119.51451 * 359.70133 * 15 14 13 25 25 C 1.37617 * 119.74062 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47199 * 308.24856 * 1 2 3 27 27 H 1.09004 * 109.47567 * 68.25409 * 1 2 3 28 28 H 1.09001 * 109.47311 * 188.25035 * 1 2 3 29 29 H 1.08994 * 109.47013 * 171.74249 * 3 2 1 30 30 H 1.08996 * 109.47050 * 291.75315 * 3 2 1 31 31 H 1.08999 * 109.46537 * 51.74967 * 3 2 1 32 32 H 0.96701 * 113.99651 * 182.99384 * 6 4 2 33 33 H 1.09000 * 113.60907 * 139.98159 * 7 4 2 34 34 H 1.09001 * 113.61043 * 270.88480 * 7 4 2 35 35 H 1.00898 * 111.00295 * 34.03994 * 10 8 2 36 36 H 1.09004 * 109.47237 * 299.99672 * 11 10 8 37 37 H 1.09003 * 109.47289 * 59.99769 * 11 10 8 38 38 H 1.08003 * 119.88083 * 359.97146 * 13 12 11 39 39 H 1.07997 * 120.12325 * 180.27123 * 14 13 12 40 40 H 0.97007 * 119.99921 * 179.97438 * 19 18 16 41 41 H 1.07993 * 120.13037 * 180.02562 * 24 15 14 42 42 H 1.08003 * 119.87708 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1461 -0.9291 1.0593 5 1 1.4956 -1.1095 1.9152 6 8 3.4742 -0.5631 1.4389 7 6 2.0930 -2.0426 -0.0002 8 6 2.1460 -0.9290 -1.0594 9 1 3.1590 -0.6497 -1.3491 10 7 1.2680 -1.1709 -2.2120 11 6 2.0436 -1.5973 -3.3844 12 6 1.1111 -1.8361 -4.5440 13 6 0.5662 -3.0955 -4.7405 14 6 -0.2910 -3.3235 -5.7927 15 6 -0.6042 -2.2753 -6.6777 16 6 -1.4784 -2.4995 -7.7663 17 1 -1.4236 -1.8692 -8.6415 18 6 -2.4147 -3.5381 -7.7093 19 7 -2.7306 -4.0715 -6.5574 20 14 -3.2134 -4.1626 -9.2783 21 1 -2.1652 -4.6744 -10.1974 22 1 -4.1605 -5.2580 -8.9495 23 1 -3.9487 -3.0523 -9.9353 24 6 -0.0407 -1.0024 -6.4718 25 6 0.8096 -0.7960 -5.4096 26 1 -0.3634 0.6362 0.8071 27 1 -0.3634 0.3807 -0.9545 28 1 -0.3634 -1.0170 0.1475 29 1 3.2037 1.3482 0.1476 30 1 1.9161 1.8923 -0.9544 31 1 1.6808 1.9916 0.8071 32 1 3.8839 -1.1697 2.0707 33 1 2.9718 -2.6874 -0.0002 34 1 1.1568 -2.6009 -0.0001 35 1 0.7140 -0.3542 -2.4224 36 1 2.7603 -0.8196 -3.6483 37 1 2.5768 -2.5191 -3.1517 38 1 0.8121 -3.8998 -4.0629 39 1 -0.7178 -4.3043 -5.9414 40 1 -3.3799 -4.7912 -6.5178 41 1 -0.2746 -0.1907 -7.1447 42 1 1.2436 0.1800 -5.2498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399152334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:23 Heat of formation + Delta-G solvation = -37.518988 kcal Electronic energy + Delta-G solvation = -20924.654804 eV Core-core repulsion = 17868.554090 eV Total energy + Delta-G solvation = -3056.100714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19335 -39.47698 -36.80526 -35.81208 -34.51179 -31.81326 -31.22143 -30.95072 -28.29055 -28.08012 -25.27980 -23.87293 -23.17313 -22.82132 -21.64274 -19.34743 -19.20435 -17.97687 -17.17316 -16.98304 -16.25529 -16.02738 -15.74961 -15.60317 -15.37593 -14.72378 -14.30456 -14.24186 -13.81193 -13.71644 -13.60584 -13.31499 -13.18496 -13.06042 -12.91205 -12.75802 -12.64629 -12.57890 -12.30804 -12.08425 -11.85148 -11.46477 -11.40895 -11.22574 -11.00294 -10.87514 -10.52460 -9.33680 -9.33166 -9.10576 -8.61946 -6.31935 0.97273 1.16615 1.37948 1.49204 1.53827 2.21320 2.70880 3.09326 3.46202 3.50744 3.73698 3.83328 3.90998 4.16740 4.30376 4.34022 4.37265 4.53105 4.58221 4.60380 4.67454 4.79659 4.82255 4.85140 4.99565 5.02497 5.05914 5.08159 5.17135 5.21993 5.24342 5.40059 5.48225 5.51156 5.55436 5.72865 5.96798 6.11708 6.23215 6.33373 6.40917 6.54871 6.72745 6.93841 6.95930 7.06191 8.34619 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036304 B = 0.003333 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.079361 B = 8399.878227 C = 8518.210819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.129 4.129 4 C 0.096 3.904 5 H 0.084 0.916 6 O -0.562 6.562 7 C -0.155 4.155 8 C 0.066 3.934 9 H 0.061 0.939 10 N -0.674 5.674 11 C 0.132 3.868 12 C -0.199 4.199 13 C -0.085 4.085 14 C -0.191 4.191 15 C 0.080 3.920 16 C -0.505 4.505 17 H 0.074 0.926 18 C 0.035 3.965 19 N -0.825 5.825 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.243 4.243 25 C -0.086 4.086 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.396 0.604 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.338 0.662 36 H 0.028 0.972 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.288 0.712 41 H 0.095 0.905 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 4.452 14.076 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.186 4.186 4 C 0.036 3.964 5 H 0.102 0.898 6 O -0.371 6.371 7 C -0.194 4.194 8 C -0.044 4.044 9 H 0.079 0.921 10 N -0.306 5.306 11 C 0.004 3.996 12 C -0.200 4.200 13 C -0.104 4.104 14 C -0.210 4.210 15 C 0.078 3.922 16 C -0.534 4.534 17 H 0.092 0.908 18 C -0.180 4.180 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.263 4.263 25 C -0.104 4.104 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.792 4.137 13.983 16.086 hybrid contribution -0.004 -0.089 -0.813 0.818 sum 6.788 4.048 13.170 15.359 Atomic orbital electron populations 1.21437 0.91657 1.02476 1.02100 1.22185 0.96181 0.94830 0.94748 1.21562 1.01011 0.94729 1.01337 1.22627 0.84329 0.94268 0.95131 0.89819 1.86393 1.28583 1.54962 1.67120 1.23684 1.02573 0.96939 0.96172 1.23106 0.94765 0.96818 0.89682 0.92102 1.60759 1.24769 1.40031 1.05026 1.20470 0.92580 0.98934 0.87604 1.19321 1.06697 0.94025 0.99995 1.20710 0.96712 0.96461 0.96507 1.21265 1.01870 0.98913 0.98989 1.17949 0.90615 0.91252 0.92401 1.19821 1.16254 1.14588 1.02771 0.90809 1.26753 0.95970 0.94745 1.00486 1.69884 1.26603 1.21018 1.27535 0.85267 0.78211 0.78593 0.77704 1.18578 1.19116 1.18362 1.21139 1.06869 0.96231 1.02040 1.20668 0.97451 0.97559 0.94744 0.91089 0.92554 0.92180 0.92345 0.93345 0.91771 0.75349 0.91308 0.89324 0.84207 0.95344 0.91775 0.88178 0.88392 0.90189 0.88715 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.39 71.98 0.60 -1.92 16 2 C -0.08 -1.69 1.26 -51.65 -0.07 -1.76 16 3 C -0.13 -2.69 8.99 71.98 0.65 -2.04 16 4 C 0.10 1.80 4.71 31.12 0.15 1.94 16 5 H 0.08 1.30 8.10 -2.39 -0.02 1.29 16 6 O -0.56 -9.92 12.17 -148.98 -1.81 -11.74 16 7 C -0.16 -3.45 7.36 31.12 0.23 -3.22 16 8 C 0.07 1.69 3.49 45.44 0.16 1.85 16 9 H 0.06 1.67 7.85 -2.39 -0.02 1.65 16 10 N -0.67 -20.82 5.99 -492.86 -2.95 -23.78 16 11 C 0.13 4.54 5.67 85.56 0.48 5.02 16 12 C -0.20 -8.50 5.42 -19.67 -0.11 -8.61 16 13 C -0.09 -4.05 9.67 22.22 0.21 -3.84 16 14 C -0.19 -10.36 8.70 22.73 0.20 -10.17 16 15 C 0.08 4.46 5.58 -21.29 -0.12 4.34 16 16 C -0.50 -28.03 9.05 23.46 0.21 -27.82 16 17 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 18 C 0.04 1.82 5.14 85.26 0.44 2.26 16 19 N -0.82 -44.23 10.95 21.83 0.24 -43.99 16 20 Si 0.98 38.98 29.60 68.60 2.03 41.01 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 24 C -0.24 -12.23 9.80 22.73 0.22 -12.01 16 25 C -0.09 -3.77 9.67 22.22 0.21 -3.55 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.32 6.93 -2.38 -0.02 1.30 16 28 H 0.06 1.34 7.32 -2.39 -0.02 1.32 16 29 H 0.06 1.30 7.07 -2.39 -0.02 1.28 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.40 3.47 9.12 -74.06 -0.68 2.79 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 2.13 7.63 -2.39 -0.02 2.11 16 35 H 0.34 10.64 7.15 -89.70 -0.64 10.00 16 36 H 0.03 0.92 8.07 -2.38 -0.02 0.90 16 37 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 38 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.10 5.58 6.16 -2.91 -0.02 5.57 16 40 H 0.29 13.96 8.30 -92.70 -0.77 13.19 16 41 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -61.31 339.33 0.68 -60.62 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.30 Total: 37.39 kcal Atomic # 6 Polarization: -63.00 SS G_CDS: 3.48 Total: -59.52 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -2.72 Total: -67.77 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.81 Total: -11.74 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -61.31 0.68 -60.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.105 kcal (2) G-P(sol) polarization free energy of solvation -61.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds