Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47167 * 120.00325 * 2 1 3 5 5 C 1.53003 * 109.47257 * 64.99372 * 4 2 1 6 6 C 1.52992 * 109.47365 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.39131 * 119.99596 * 185.72517 * 9 7 6 11 11 C 1.38643 * 120.29102 * 19.23887 * 10 9 7 12 12 C 1.38218 * 120.03790 * 180.25521 * 11 10 9 13 13 C 1.38869 * 120.61130 * 359.74772 * 12 11 10 14 14 C 1.36452 * 120.58138 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94318 * 0.02562 * 14 13 12 16 16 C 1.41075 * 120.30396 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00290 * 206.47144 * 16 15 14 18 18 C 1.39960 * 119.99628 * 26.47377 * 16 15 14 19 19 N 1.30856 * 120.00076 * 201.35880 * 18 16 15 20 20 Si 1.86801 * 120.00227 * 21.35675 * 18 16 15 21 21 H 1.48501 * 109.47328 * 270.00467 * 20 18 16 22 22 H 1.48502 * 109.46755 * 29.99960 * 20 18 16 23 23 H 1.48496 * 109.47355 * 149.99993 * 20 18 16 24 24 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46769 * 299.99823 * 1 2 3 26 26 H 1.09002 * 109.46769 * 59.99452 * 1 2 3 27 27 H 1.09003 * 109.46769 * 240.00177 * 2 1 3 28 28 H 1.09001 * 109.46962 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47238 * 299.99824 * 3 2 1 30 30 H 1.09003 * 109.47134 * 60.00400 * 3 2 1 31 31 H 1.09004 * 109.46881 * 304.99863 * 4 2 1 32 32 H 1.08997 * 109.47125 * 184.99414 * 4 2 1 33 33 H 1.09008 * 109.46671 * 59.99929 * 5 4 2 34 34 H 1.09004 * 109.47476 * 300.00606 * 5 4 2 35 35 H 1.09000 * 109.47390 * 59.99950 * 6 5 4 36 36 H 1.09004 * 109.47301 * 300.00693 * 6 5 4 37 37 H 0.96996 * 120.00122 * 5.72752 * 9 7 6 38 38 H 1.08002 * 119.97637 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.69243 * 179.76358 * 12 11 10 40 40 H 1.08004 * 119.70407 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.02954 * 180.02562 * 14 13 12 42 42 H 0.97004 * 119.99239 * 354.93959 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 6 2.1446 -2.9167 2.4374 7 6 1.7464 -4.3688 2.3767 8 8 1.1166 -4.7858 1.4278 9 7 2.0892 -5.2039 3.3775 10 6 1.8269 -6.5659 3.2676 11 6 1.5936 -7.1351 2.0251 12 6 1.3284 -8.4877 1.9225 13 6 1.2976 -9.2902 3.0554 14 6 1.5292 -8.7574 4.2901 15 6 1.8016 -7.3830 4.4222 16 6 2.0417 -6.8240 5.6951 17 1 1.8305 -5.7803 5.8751 18 6 2.5535 -7.6222 6.7246 19 7 2.3932 -7.2626 7.9725 20 14 3.4655 -9.2007 6.3172 21 1 2.5012 -10.3285 6.2587 22 1 4.1398 -9.0574 5.0019 23 1 4.4804 -9.4711 7.3670 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1264 -0.6445 1.2951 33 1 2.0698 -2.6550 0.3001 34 1 0.5488 -2.2724 1.1420 35 1 1.7097 -2.4571 3.3249 36 1 3.2310 -2.8398 2.4838 37 1 2.5186 -4.8555 4.1744 38 1 1.6146 -6.5203 1.1374 39 1 1.1437 -8.9245 0.9522 40 1 1.0894 -10.3455 2.9582 41 1 1.5035 -9.3898 5.1652 42 1 1.9851 -6.4080 8.1823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410830784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -50.538313 kcal Electronic energy + Delta-G solvation = -20735.759838 eV Core-core repulsion = 17679.094564 eV Total energy + Delta-G solvation = -3056.665274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79560 -37.67425 -36.90226 -33.91492 -33.75285 -32.77904 -30.24087 -28.97725 -27.35842 -26.92213 -24.74259 -22.79438 -21.66170 -20.30324 -20.11727 -19.43614 -18.23000 -16.82148 -16.32768 -15.86235 -15.09403 -14.84191 -14.43836 -14.14539 -13.95623 -13.72156 -13.42704 -13.13851 -12.72665 -12.57196 -12.40009 -12.22618 -12.11305 -11.78385 -11.66546 -11.52787 -11.06118 -10.91884 -10.80389 -10.73960 -10.67449 -10.49609 -10.46565 -9.87812 -9.68879 -9.46097 -9.10259 -8.74923 -7.75418 -7.38372 -6.99782 -4.55329 2.42868 2.71172 3.18167 3.25300 3.39251 3.53212 3.82666 3.97638 4.52719 4.64582 4.73840 4.78005 5.07533 5.13872 5.27674 5.39412 5.43582 5.50395 5.52784 5.62915 5.68656 5.73853 5.78192 5.84228 6.03171 6.06750 6.11741 6.13235 6.24234 6.32626 6.39808 6.41195 6.68937 6.82901 7.04652 7.34673 7.36436 7.51369 7.68824 7.84809 7.92663 8.23534 8.36728 8.48907 8.69806 8.89181 9.93601 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.003767 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.704217 B = 7430.416667 C = 8212.756040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.139 4.139 7 C 0.494 3.506 8 O -0.540 6.540 9 N -0.639 5.639 10 C 0.024 3.976 11 C -0.093 4.093 12 C -0.230 4.230 13 C -0.089 4.089 14 C -0.235 4.235 15 C 0.085 3.915 16 C -0.525 4.525 17 H 0.074 0.926 18 C 0.046 3.954 19 N -0.813 5.813 20 Si 1.075 2.925 21 H -0.276 1.276 22 H -0.263 1.263 23 H -0.291 1.291 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.406 0.594 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 11.502 -8.947 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.180 4.180 7 C 0.282 3.718 8 O -0.419 6.419 9 N -0.280 5.280 10 C -0.070 4.070 11 C -0.114 4.114 12 C -0.250 4.250 13 C -0.107 4.107 14 C -0.255 4.255 15 C 0.081 3.919 16 C -0.553 4.553 17 H 0.092 0.908 18 C -0.174 4.174 19 N -0.435 5.435 20 Si 0.901 3.099 21 H -0.202 1.202 22 H -0.188 1.188 23 H -0.218 1.218 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.241 0.759 38 H 0.148 0.852 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.784 10.028 -8.826 13.477 hybrid contribution -0.697 1.581 -0.001 1.728 sum 1.087 11.609 -8.827 14.624 Atomic orbital electron populations 1.21909 0.95290 1.02247 1.01355 1.21114 0.96010 0.95886 0.98607 1.21847 1.00829 0.96218 1.01548 1.21684 1.00715 0.95175 0.97743 1.21377 1.02089 0.93708 0.96952 1.21668 1.02778 0.92596 1.00913 1.20678 0.79973 0.88135 0.83018 1.90559 1.39826 1.77471 1.34042 1.43050 1.58163 1.06549 1.20223 1.17778 1.12833 0.82552 0.93820 1.21170 0.99052 0.94782 0.96356 1.20356 1.13939 0.93858 0.96870 1.20385 0.99411 0.97741 0.93204 1.20704 1.12461 0.95504 0.96791 1.17496 0.91326 0.91565 0.91532 1.20359 1.40454 0.99042 0.95483 0.90774 1.27254 0.93939 1.04313 0.91874 1.70574 1.31962 1.21189 1.19802 0.83567 0.76307 0.73639 0.76359 1.20247 1.18799 1.21826 0.92029 0.92840 0.93067 0.91216 0.92815 0.92924 0.92796 0.91983 0.92004 0.91306 0.90992 0.89342 0.89232 0.75861 0.85171 0.88681 0.88819 0.87415 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.95 37.16 0.33 -1.04 16 2 C -0.10 -0.88 2.92 -90.62 -0.26 -1.14 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.12 -1.11 4.68 -26.73 -0.13 -1.23 16 5 C -0.10 -1.25 4.26 -26.73 -0.11 -1.37 16 6 C -0.14 -1.81 5.70 -27.89 -0.16 -1.97 16 7 C 0.49 9.10 7.67 -10.99 -0.08 9.01 16 8 O -0.54 -11.57 12.87 5.55 0.07 -11.50 16 9 N -0.64 -12.93 5.18 -9.47 -0.05 -12.98 16 10 C 0.02 0.58 6.54 -83.17 -0.54 0.04 16 11 C -0.09 -2.20 8.78 -39.44 -0.35 -2.54 16 12 C -0.23 -5.16 10.04 -39.36 -0.39 -5.56 16 13 C -0.09 -1.99 9.96 -39.99 -0.40 -2.39 16 14 C -0.24 -5.73 7.33 -39.28 -0.29 -6.02 16 15 C 0.09 2.15 5.18 -106.65 -0.55 1.60 16 16 C -0.52 -13.39 8.75 -37.86 -0.33 -13.73 16 17 H 0.07 1.89 7.20 -52.49 -0.38 1.51 16 18 C 0.05 1.17 5.38 -17.32 -0.09 1.08 16 19 N -0.81 -21.08 13.66 55.55 0.76 -20.32 16 20 Si 1.07 23.85 25.01 -169.99 -4.25 19.60 16 21 H -0.28 -5.88 6.37 56.52 0.36 -5.52 16 22 H -0.26 -5.84 7.10 56.52 0.40 -5.44 16 23 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 24 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.90 8.10 -51.92 -0.42 0.48 16 34 H 0.07 0.96 6.52 -51.93 -0.34 0.62 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 7.52 7.33 -40.82 -0.30 7.22 16 38 H 0.13 3.04 5.40 -52.49 -0.28 2.76 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 41 H 0.11 2.58 4.35 -52.49 -0.23 2.35 16 42 H 0.29 7.17 8.73 -40.82 -0.36 6.82 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -28.51 334.35 -8.01 -36.52 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.56 Total: 9.70 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.02 Total: -26.06 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.71 Total: -33.30 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.25 Total: 19.60 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.51 -8.01 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410830784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.018 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds