Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47167 * 120.00325 * 2 1 3 5 5 C 1.53003 * 109.47257 * 64.99372 * 4 2 1 6 6 C 1.52992 * 109.47365 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.39131 * 119.99596 * 185.72517 * 9 7 6 11 11 C 1.38643 * 120.29102 * 19.23887 * 10 9 7 12 12 C 1.38218 * 120.03790 * 180.25521 * 11 10 9 13 13 C 1.38869 * 120.61130 * 359.74772 * 12 11 10 14 14 C 1.36452 * 120.58138 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94318 * 0.02562 * 14 13 12 16 16 C 1.41075 * 120.30396 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00290 * 206.47144 * 16 15 14 18 18 C 1.39960 * 119.99628 * 26.47377 * 16 15 14 19 19 N 1.30856 * 120.00076 * 201.35880 * 18 16 15 20 20 Si 1.86801 * 120.00227 * 21.35675 * 18 16 15 21 21 H 1.48501 * 109.47328 * 270.00467 * 20 18 16 22 22 H 1.48502 * 109.46755 * 29.99960 * 20 18 16 23 23 H 1.48496 * 109.47355 * 149.99993 * 20 18 16 24 24 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46769 * 299.99823 * 1 2 3 26 26 H 1.09002 * 109.46769 * 59.99452 * 1 2 3 27 27 H 1.09003 * 109.46769 * 240.00177 * 2 1 3 28 28 H 1.09001 * 109.46962 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47238 * 299.99824 * 3 2 1 30 30 H 1.09003 * 109.47134 * 60.00400 * 3 2 1 31 31 H 1.09004 * 109.46881 * 304.99863 * 4 2 1 32 32 H 1.08997 * 109.47125 * 184.99414 * 4 2 1 33 33 H 1.09008 * 109.46671 * 59.99929 * 5 4 2 34 34 H 1.09004 * 109.47476 * 300.00606 * 5 4 2 35 35 H 1.09000 * 109.47390 * 59.99950 * 6 5 4 36 36 H 1.09004 * 109.47301 * 300.00693 * 6 5 4 37 37 H 0.96996 * 120.00122 * 5.72752 * 9 7 6 38 38 H 1.08002 * 119.97637 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.69243 * 179.76358 * 12 11 10 40 40 H 1.08004 * 119.70407 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.02954 * 180.02562 * 14 13 12 42 42 H 0.97004 * 119.99239 * 354.93959 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 6 2.1446 -2.9167 2.4374 7 6 1.7464 -4.3688 2.3767 8 8 1.1166 -4.7858 1.4278 9 7 2.0892 -5.2039 3.3775 10 6 1.8269 -6.5659 3.2676 11 6 1.5936 -7.1351 2.0251 12 6 1.3284 -8.4877 1.9225 13 6 1.2976 -9.2902 3.0554 14 6 1.5292 -8.7574 4.2901 15 6 1.8016 -7.3830 4.4222 16 6 2.0417 -6.8240 5.6951 17 1 1.8305 -5.7803 5.8751 18 6 2.5535 -7.6222 6.7246 19 7 2.3932 -7.2626 7.9725 20 14 3.4655 -9.2007 6.3172 21 1 2.5012 -10.3285 6.2587 22 1 4.1398 -9.0574 5.0019 23 1 4.4804 -9.4711 7.3670 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1264 -0.6445 1.2951 33 1 2.0698 -2.6550 0.3001 34 1 0.5488 -2.2724 1.1420 35 1 1.7097 -2.4571 3.3249 36 1 3.2310 -2.8398 2.4838 37 1 2.5186 -4.8555 4.1744 38 1 1.6146 -6.5203 1.1374 39 1 1.1437 -8.9245 0.9522 40 1 1.0894 -10.3455 2.9582 41 1 1.5035 -9.3898 5.1652 42 1 1.9851 -6.4080 8.1823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410830784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = -65.438257 kcal Electronic energy + Delta-G solvation = -20736.405948 eV Core-core repulsion = 17679.094564 eV Total energy + Delta-G solvation = -3057.311384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38926 -39.27784 -37.84592 -35.68961 -35.52336 -33.80219 -32.10590 -30.57890 -28.13904 -27.95319 -26.55465 -24.21616 -23.13254 -21.93008 -21.07598 -20.76674 -20.11786 -18.44617 -17.88439 -16.97277 -16.63584 -16.17719 -15.94924 -15.44759 -15.26135 -14.99886 -14.72734 -14.44988 -14.40435 -14.10120 -13.86942 -13.49885 -13.08647 -13.01269 -12.70453 -12.63445 -12.55937 -12.46890 -12.25709 -11.88440 -11.69439 -11.51587 -11.46596 -11.42521 -11.31938 -11.19848 -10.91938 -10.40435 -9.64598 -9.29767 -8.79448 -6.48949 0.67926 0.84199 1.40326 1.54534 1.74836 1.83461 2.18861 2.37754 2.64657 3.51978 3.73916 3.81794 3.97636 4.11690 4.22694 4.34648 4.37005 4.45067 4.62146 4.66684 4.70947 4.74980 4.83376 4.88642 4.89180 4.98521 5.01162 5.04095 5.10632 5.22751 5.25601 5.31168 5.40319 5.44142 5.53600 5.56169 5.57868 5.65008 5.93462 6.02159 6.05125 6.38319 6.61543 6.67292 6.88980 7.31642 8.00102 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.003767 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.704217 B = 7430.416667 C = 8212.756040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.098 4.098 6 C -0.129 4.129 7 C 0.491 3.509 8 O -0.571 6.571 9 N -0.644 5.644 10 C 0.019 3.981 11 C -0.113 4.113 12 C -0.222 4.222 13 C -0.094 4.094 14 C -0.248 4.248 15 C 0.060 3.940 16 C -0.542 4.542 17 H 0.061 0.939 18 C 0.019 3.981 19 N -0.837 5.837 20 Si 1.102 2.898 21 H -0.261 1.261 22 H -0.266 1.266 23 H -0.282 1.282 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.412 0.588 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 11.837 -9.988 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.136 4.136 6 C -0.169 4.169 7 C 0.282 3.718 8 O -0.452 6.452 9 N -0.286 5.286 10 C -0.076 4.076 11 C -0.133 4.133 12 C -0.242 4.242 13 C -0.113 4.113 14 C -0.268 4.268 15 C 0.056 3.944 16 C -0.571 4.571 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.460 5.460 20 Si 0.924 3.076 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.208 1.208 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.249 0.751 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.127 0.873 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.297 10.390 -9.863 14.509 hybrid contribution -0.929 1.516 0.143 1.784 sum 1.368 11.907 -9.720 15.431 Atomic orbital electron populations 1.21908 0.95598 1.01373 1.01938 1.21124 0.95776 0.96753 0.98108 1.21815 1.01165 0.95131 1.02022 1.21637 1.01503 0.93099 0.98379 1.21334 1.00975 0.95402 0.95925 1.21735 1.04464 0.88469 1.02205 1.21670 0.78610 0.89891 0.81655 1.90532 1.41081 1.78493 1.35082 1.43184 1.58540 1.05672 1.21159 1.18050 1.11668 0.84187 0.93667 1.21373 1.00042 0.95650 0.96250 1.20782 1.11650 0.93427 0.98317 1.20737 0.98632 0.99601 0.92312 1.20923 1.12638 0.95333 0.97867 1.17716 0.92402 0.92532 0.91754 1.20341 1.41908 0.98705 0.96189 0.92049 1.28101 0.93889 1.06126 0.91549 1.70632 1.33697 1.21428 1.20248 0.83219 0.76093 0.72050 0.76214 1.18713 1.19058 1.20849 0.93597 0.92458 0.92333 0.91754 0.92265 0.92403 0.92421 0.91191 0.90800 0.92595 0.92571 0.87293 0.86676 0.75117 0.85225 0.85824 0.85349 0.87275 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.95 71.98 0.64 -1.95 16 2 C -0.10 -1.62 2.92 -10.79 -0.03 -1.65 16 3 C -0.14 -1.91 9.19 71.98 0.66 -1.24 16 4 C -0.11 -1.85 4.68 30.60 0.14 -1.70 16 5 C -0.10 -2.27 4.26 30.59 0.13 -2.14 16 6 C -0.13 -3.13 5.70 29.84 0.17 -2.96 16 7 C 0.49 17.82 7.67 87.66 0.67 18.49 16 8 O -0.57 -24.45 12.87 -3.04 -0.04 -24.49 16 9 N -0.64 -25.98 5.18 -302.27 -1.57 -27.55 16 10 C 0.02 0.92 6.54 38.88 0.25 1.18 16 11 C -0.11 -5.21 8.78 22.36 0.20 -5.02 16 12 C -0.22 -9.46 10.04 22.42 0.22 -9.24 16 13 C -0.09 -4.01 9.96 22.00 0.22 -3.79 16 14 C -0.25 -11.81 7.33 22.46 0.16 -11.65 16 15 C 0.06 3.03 5.18 -21.18 -0.11 2.92 16 16 C -0.54 -28.12 8.75 23.38 0.20 -27.91 16 17 H 0.06 3.23 7.20 -2.91 -0.02 3.20 16 18 C 0.02 0.95 5.38 85.26 0.46 1.41 16 19 N -0.84 -43.98 13.66 21.83 0.30 -43.68 16 20 Si 1.10 47.51 25.01 68.60 1.72 49.23 16 21 H -0.26 -10.57 6.37 99.48 0.63 -9.94 16 22 H -0.27 -11.45 7.10 99.48 0.71 -10.75 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 24 H 0.04 0.92 6.56 -2.39 -0.02 0.90 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.43 8.10 -2.38 -0.02 1.41 16 34 H 0.06 1.47 6.52 -2.38 -0.02 1.46 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.41 15.30 7.33 -92.71 -0.68 14.62 16 38 H 0.13 6.00 5.40 -2.91 -0.02 5.98 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.11 5.09 4.35 -2.91 -0.01 5.08 16 42 H 0.28 14.48 8.73 -92.71 -0.81 13.67 16 Total: -1.00 -61.03 334.35 4.63 -56.40 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 0.22 Total: 35.32 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 4.00 Total: -45.25 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -1.27 Total: -71.22 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.72 Total: 49.23 kcal Total: -61.03 4.63 -56.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410830784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.034 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds